Wall clock time and date at job start Tue Mar 31 2020 17:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 116.99835 * 2 1 4 4 C 1.39141 * 120.47420 * 180.02562 * 3 2 1 5 5 C 1.38530 * 118.37851 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.22052 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.55561 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46749 * 125.00327 * 7 6 5 9 9 O 1.21275 * 120.00016 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99433 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99358 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46678 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.64073 * 51.86599 * 12 11 10 14 14 C 1.54329 * 110.85248 * 288.69107 * 12 11 10 15 15 N 1.47019 * 107.26641 * 219.67101 * 14 12 11 16 16 C 1.36945 * 125.64869 * 178.84835 * 15 14 12 17 17 H 1.08000 * 119.99441 * 359.72211 * 16 15 14 18 18 C 1.38811 * 120.00031 * 179.72068 * 16 15 14 19 19 N 1.31619 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99811 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46677 * 60.00366 * 20 18 16 22 22 H 1.48501 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47416 * 300.00359 * 20 18 16 24 24 C 1.47426 * 108.70491 * 358.59050 * 15 14 12 25 25 C 1.54910 * 104.83073 * 24.35098 * 24 15 14 26 26 H 1.09005 * 111.00236 * 81.10632 * 25 24 15 27 27 C 1.52999 * 111.00400 * 204.91488 * 25 24 15 28 28 N 1.31844 * 120.88444 * 0.25866 * 6 5 4 29 29 C 1.31846 * 121.78128 * 359.47385 * 28 6 5 30 30 H 1.09008 * 109.47227 * 299.99975 * 1 2 3 31 31 H 1.09000 * 109.47655 * 60.00021 * 1 2 3 32 32 H 1.09005 * 109.47564 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.80949 * 359.96169 * 4 3 2 34 34 H 1.08001 * 120.39140 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47294 * 5.00668 * 7 6 5 36 36 H 1.09000 * 109.47116 * 245.00026 * 7 6 5 37 37 H 0.97002 * 120.00830 * 0.02562 * 10 8 7 38 38 H 1.08993 * 109.46929 * 60.00488 * 11 10 8 39 39 H 1.09000 * 109.47155 * 300.00044 * 11 10 8 40 40 H 1.09003 * 109.99010 * 100.19995 * 14 12 11 41 41 H 1.08999 * 109.78366 * 339.03505 * 14 12 11 42 42 H 0.96998 * 120.00243 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.36613 * 143.19006 * 24 15 14 44 44 H 1.08998 * 110.36249 * 265.40535 * 24 15 14 45 45 H 1.09003 * 109.46828 * 58.55105 * 27 25 24 46 46 H 1.09002 * 109.47003 * 178.54292 * 27 25 24 47 47 H 1.09001 * 109.47186 * 298.55016 * 27 25 24 48 48 H 1.07994 * 119.66166 * 180.27128 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4348 1.2953 -0.0005 5 6 4.0181 2.5518 -0.0011 6 6 3.2078 3.6721 -0.0016 7 6 3.8344 5.0427 -0.0016 8 6 3.3024 5.8382 -1.1658 9 8 2.4945 5.3409 -1.9213 10 7 3.7245 7.1021 -1.3672 11 6 3.2078 7.8752 -2.4994 12 6 3.8429 9.2672 -2.4985 13 1 4.9289 9.1940 -2.4414 14 6 3.2925 10.1214 -1.3370 15 7 3.1073 11.4870 -1.8493 16 6 2.6139 12.5469 -1.1361 17 1 2.3185 12.4138 -0.1058 18 6 2.4935 13.7922 -1.7374 19 7 2.8530 13.9543 -2.9931 20 14 1.8198 15.2377 -0.7647 21 1 2.6891 15.4903 0.4125 22 1 1.7920 16.4455 -1.6283 23 1 0.4424 14.9265 -0.3053 24 6 3.5464 11.5279 -3.2560 25 6 3.4121 10.0678 -3.7559 26 1 2.3815 9.8418 -4.0296 27 6 4.3589 9.8001 -4.9276 28 7 1.8944 3.5574 0.0035 29 6 1.3001 2.3805 -0.0010 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.0432 0.4030 -0.0003 34 1 5.0932 2.6551 -0.0011 35 1 4.9165 4.9475 -0.0908 36 1 3.5901 5.5538 0.9296 37 1 4.3710 7.4998 -0.7632 38 1 2.1256 7.9700 -2.4108 39 1 3.4528 7.3641 -3.4304 40 1 4.0032 10.1288 -0.5106 41 1 2.3367 9.7179 -1.0029 42 1 2.7685 14.8244 -3.4134 43 1 2.9014 12.1882 -3.8357 44 1 4.5829 11.8588 -3.3203 45 1 5.3857 9.9920 -4.6161 46 1 4.2629 8.7609 -5.2421 47 1 4.1027 10.4566 -5.7591 48 1 0.2216 2.3264 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102279688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:39 Heat of formation + Delta-G solvation = -16.410487 kcal Electronic energy + Delta-G solvation = -27831.178765 eV Core-core repulsion = 23887.157992 eV Total energy + Delta-G solvation = -3944.020773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00451 -39.61358 -38.44879 -37.81078 -34.55923 -32.98136 -32.67465 -32.57173 -30.73573 -29.56189 -28.29894 -27.37993 -25.92142 -24.97393 -23.72149 -22.96424 -22.24642 -20.54278 -19.81572 -19.21851 -18.49214 -17.50502 -16.98962 -16.65029 -16.48949 -16.18270 -15.62378 -15.31346 -14.93962 -14.54495 -14.48332 -14.12649 -14.08540 -13.69455 -13.31998 -13.16499 -13.15654 -12.79940 -12.63653 -12.43116 -12.25679 -12.15927 -11.88278 -11.69448 -11.51987 -11.36256 -11.12281 -10.87048 -10.76947 -10.20809 -10.04451 -9.99346 -9.89886 -9.84804 -9.70554 -9.55705 -9.33590 -8.85739 -8.63608 -8.61705 -6.81442 -5.63726 -3.05407 0.83564 1.04069 2.78148 2.81088 3.21927 3.41403 3.45527 3.46857 3.63693 4.04975 4.35567 4.39409 4.49834 4.59412 4.74804 4.76580 4.92106 5.00560 5.09561 5.16347 5.19999 5.21919 5.28853 5.33796 5.36516 5.51898 5.60982 5.66121 5.78804 5.80910 5.91087 6.10452 6.16501 6.20632 6.23482 6.30750 6.52519 6.56597 6.62790 6.65246 6.83145 6.84753 6.98190 7.55326 7.63821 7.64548 7.80624 7.88235 8.37780 8.38392 9.23803 9.84741 10.49807 11.39936 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.001978 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.780436 B =14154.642721 C =14752.180861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.070 3.930 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.109 3.891 7 C -0.089 4.089 8 C 0.516 3.484 9 O -0.528 6.528 10 N -0.728 5.728 11 C 0.135 3.865 12 C -0.109 4.109 13 H 0.076 0.924 14 C 0.141 3.859 15 N -0.605 5.605 16 C -0.222 4.222 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.159 3.841 25 C -0.111 4.111 26 H 0.071 0.929 27 C -0.134 4.134 28 N -0.419 5.419 29 C 0.027 3.973 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.024 0.976 42 H 0.252 0.748 43 H 0.106 0.894 44 H 0.012 0.988 45 H 0.050 0.950 46 H 0.044 0.956 47 H 0.055 0.945 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.896 -25.966 5.139 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.023 3.977 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.030 4.030 7 C -0.130 4.130 8 C 0.300 3.700 9 O -0.403 6.403 10 N -0.380 5.380 11 C 0.011 3.989 12 C -0.128 4.128 13 H 0.094 0.906 14 C 0.015 3.985 15 N -0.331 5.331 16 C -0.351 4.351 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.034 3.966 25 C -0.132 4.132 26 H 0.089 0.911 27 C -0.192 4.192 28 N -0.128 5.128 29 C -0.132 4.132 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.234 0.766 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.124 0.876 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.807 -25.539 4.562 26.006 hybrid contribution 0.279 0.314 0.836 0.936 sum 2.086 -25.225 5.398 25.881 Atomic orbital electron populations 1.23131 0.77906 1.04311 1.01806 1.86054 1.21747 1.26153 1.88670 1.20104 0.93322 0.85756 0.98539 1.20848 0.91651 0.98716 1.02349 1.21793 1.01260 0.91631 0.99908 1.20463 0.89278 0.94309 0.98990 1.20554 1.01062 0.91860 0.99500 1.20220 0.81808 0.81821 0.86110 1.90722 1.32797 1.69976 1.46840 1.46060 1.46709 1.13867 1.31349 1.21413 0.98827 0.90476 0.88163 1.22493 0.99638 0.92580 0.98101 0.90599 1.21340 0.96878 0.86561 0.93689 1.44486 1.74665 1.04396 1.09519 1.19030 1.34363 0.87098 0.94576 0.90606 1.24789 1.01775 0.97634 0.96543 1.69785 1.53682 1.22645 1.10981 0.86152 0.78798 0.81873 0.78667 1.21255 1.21584 1.21174 1.21973 0.98486 0.90456 0.85639 1.22598 0.98700 0.99136 0.92738 0.91064 1.21648 0.99205 1.00123 0.98195 1.67304 1.11474 1.26274 1.07741 1.22891 1.00529 0.86919 1.02903 0.92336 0.92232 0.87920 0.84021 0.83985 0.87360 0.87036 0.76591 0.91406 0.91833 0.96418 0.95782 0.93700 0.87645 0.96953 0.93059 0.93712 0.92610 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -2.84 10.51 -19.44 -0.20 -3.04 16 3 C 0.07 0.71 6.71 -39.07 -0.26 0.45 16 4 C -0.11 -0.99 10.13 -39.14 -0.40 -1.39 16 5 C -0.13 -1.12 9.70 -39.46 -0.38 -1.50 16 6 C 0.11 1.24 5.76 -82.58 -0.48 0.76 16 7 C -0.09 -0.85 6.10 -29.03 -0.18 -1.02 16 8 C 0.52 7.01 7.76 -10.98 -0.09 6.92 16 9 O -0.53 -9.51 15.34 5.56 0.09 -9.42 16 10 N -0.73 -9.20 5.47 -60.29 -0.33 -9.53 16 11 C 0.13 2.03 5.02 -4.04 -0.02 2.01 16 12 C -0.11 -1.81 2.42 -88.78 -0.22 -2.02 16 13 H 0.08 1.17 8.01 -51.93 -0.42 0.76 16 14 C 0.14 2.87 6.76 -3.06 -0.02 2.85 16 15 N -0.61 -15.44 3.39 -170.07 -0.58 -16.02 16 16 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 19 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 20 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.16 3.82 5.35 -2.53 -0.01 3.80 16 25 C -0.11 -2.07 3.09 -88.47 -0.27 -2.34 16 26 H 0.07 1.36 8.05 -51.93 -0.42 0.95 16 27 C -0.13 -2.07 9.29 37.16 0.35 -1.73 16 28 N -0.42 -5.69 9.23 -9.35 -0.09 -5.78 16 29 C 0.03 0.30 10.22 -17.37 -0.18 0.12 16 30 H 0.06 0.27 7.68 -51.92 -0.40 -0.13 16 31 H 0.06 0.31 7.68 -51.93 -0.40 -0.09 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 0.79 7.95 -52.49 -0.42 0.37 16 35 H 0.11 0.64 7.87 -51.93 -0.41 0.23 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 38 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.51 7.69 -51.93 -0.40 0.11 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 44 H 0.01 0.32 8.04 -51.93 -0.42 -0.10 16 45 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.16 1.43 6.32 -52.49 -0.33 1.09 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -35.65 391.53 -8.68 -44.33 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.59 Total: 1.52 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.41 Total: 1.24 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.43 Total: -57.65 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.12 Total: -12.47 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.65 -8.68 -44.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102279688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.918 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds