Wall clock time and date at job start Tue Mar 31 2020 17:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 116.99835 * 2 1 4 4 C 1.39141 * 120.47420 * 180.02562 * 3 2 1 5 5 C 1.38530 * 118.37851 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.22052 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.55561 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46749 * 125.00327 * 7 6 5 9 9 O 1.21275 * 120.00016 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99433 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99358 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46678 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.64073 * 51.86599 * 12 11 10 14 14 C 1.54329 * 110.85248 * 288.69107 * 12 11 10 15 15 N 1.47019 * 107.26641 * 219.67101 * 14 12 11 16 16 C 1.36945 * 125.64869 * 178.84835 * 15 14 12 17 17 H 1.08000 * 119.99441 * 359.72211 * 16 15 14 18 18 C 1.38811 * 120.00031 * 179.72068 * 16 15 14 19 19 N 1.31619 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99811 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46677 * 60.00366 * 20 18 16 22 22 H 1.48501 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47416 * 300.00359 * 20 18 16 24 24 C 1.47426 * 108.70491 * 358.59050 * 15 14 12 25 25 C 1.54910 * 104.83073 * 24.35098 * 24 15 14 26 26 H 1.09005 * 111.00236 * 81.10632 * 25 24 15 27 27 C 1.52999 * 111.00400 * 204.91488 * 25 24 15 28 28 N 1.31844 * 120.88444 * 0.25866 * 6 5 4 29 29 C 1.31846 * 121.78128 * 359.47385 * 28 6 5 30 30 H 1.09008 * 109.47227 * 299.99975 * 1 2 3 31 31 H 1.09000 * 109.47655 * 60.00021 * 1 2 3 32 32 H 1.09005 * 109.47564 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.80949 * 359.96169 * 4 3 2 34 34 H 1.08001 * 120.39140 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47294 * 5.00668 * 7 6 5 36 36 H 1.09000 * 109.47116 * 245.00026 * 7 6 5 37 37 H 0.97002 * 120.00830 * 0.02562 * 10 8 7 38 38 H 1.08993 * 109.46929 * 60.00488 * 11 10 8 39 39 H 1.09000 * 109.47155 * 300.00044 * 11 10 8 40 40 H 1.09003 * 109.99010 * 100.19995 * 14 12 11 41 41 H 1.08999 * 109.78366 * 339.03505 * 14 12 11 42 42 H 0.96998 * 120.00243 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.36613 * 143.19006 * 24 15 14 44 44 H 1.08998 * 110.36249 * 265.40535 * 24 15 14 45 45 H 1.09003 * 109.46828 * 58.55105 * 27 25 24 46 46 H 1.09002 * 109.47003 * 178.54292 * 27 25 24 47 47 H 1.09001 * 109.47186 * 298.55016 * 27 25 24 48 48 H 1.07994 * 119.66166 * 180.27128 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4348 1.2953 -0.0005 5 6 4.0181 2.5518 -0.0011 6 6 3.2078 3.6721 -0.0016 7 6 3.8344 5.0427 -0.0016 8 6 3.3024 5.8382 -1.1658 9 8 2.4945 5.3409 -1.9213 10 7 3.7245 7.1021 -1.3672 11 6 3.2078 7.8752 -2.4994 12 6 3.8429 9.2672 -2.4985 13 1 4.9289 9.1940 -2.4414 14 6 3.2925 10.1214 -1.3370 15 7 3.1073 11.4870 -1.8493 16 6 2.6139 12.5469 -1.1361 17 1 2.3185 12.4138 -0.1058 18 6 2.4935 13.7922 -1.7374 19 7 2.8530 13.9543 -2.9931 20 14 1.8198 15.2377 -0.7647 21 1 2.6891 15.4903 0.4125 22 1 1.7920 16.4455 -1.6283 23 1 0.4424 14.9265 -0.3053 24 6 3.5464 11.5279 -3.2560 25 6 3.4121 10.0678 -3.7559 26 1 2.3815 9.8418 -4.0296 27 6 4.3589 9.8001 -4.9276 28 7 1.8944 3.5574 0.0035 29 6 1.3001 2.3805 -0.0010 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.0432 0.4030 -0.0003 34 1 5.0932 2.6551 -0.0011 35 1 4.9165 4.9475 -0.0908 36 1 3.5901 5.5538 0.9296 37 1 4.3710 7.4998 -0.7632 38 1 2.1256 7.9700 -2.4108 39 1 3.4528 7.3641 -3.4304 40 1 4.0032 10.1288 -0.5106 41 1 2.3367 9.7179 -1.0029 42 1 2.7685 14.8244 -3.4134 43 1 2.9014 12.1882 -3.8357 44 1 4.5829 11.8588 -3.3203 45 1 5.3857 9.9920 -4.6161 46 1 4.2629 8.7609 -5.2421 47 1 4.1027 10.4566 -5.7591 48 1 0.2216 2.3264 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102279688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:38 Heat of formation + Delta-G solvation = -41.282541 kcal Electronic energy + Delta-G solvation = -27832.257298 eV Core-core repulsion = 23887.157992 eV Total energy + Delta-G solvation = -3945.099306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73135 -40.67575 -39.59223 -38.93947 -35.98338 -34.63195 -33.42458 -33.36803 -32.54781 -30.88810 -29.07592 -28.16972 -27.69283 -26.45453 -24.65737 -24.21900 -23.19638 -21.77390 -21.40597 -20.63672 -19.13608 -18.87527 -18.26363 -17.77173 -17.43848 -16.98199 -16.78919 -16.46450 -16.26044 -15.81371 -15.59346 -15.17901 -15.05331 -14.94364 -14.67489 -14.32261 -14.12894 -14.02251 -13.87860 -13.50820 -13.37850 -13.17457 -13.06377 -12.84054 -12.76086 -12.75539 -12.63246 -12.44534 -12.30101 -11.99427 -11.82262 -11.57635 -11.39362 -11.24525 -10.82596 -10.72094 -10.63239 -10.31534 -9.99842 -9.34214 -8.86330 -7.76087 -5.20372 0.12482 0.32994 1.46093 1.49363 1.55652 1.77743 2.22292 2.27288 2.50055 2.84805 3.32665 3.34816 3.65089 3.67119 3.74325 3.79305 3.92027 3.97791 4.00305 4.13149 4.32836 4.34129 4.39883 4.42779 4.52373 4.56043 4.61108 4.65855 4.69311 4.74896 4.76971 4.84479 4.88399 4.98494 5.01420 5.11076 5.12444 5.19452 5.37470 5.41618 5.49426 5.54146 5.54997 5.73983 5.86130 6.21193 6.33263 6.67180 7.06488 7.12414 7.38594 7.80523 8.44157 9.25161 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.001978 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.780436 B =14154.642721 C =14752.180861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.065 3.935 4 C -0.116 4.116 5 C -0.116 4.116 6 C 0.083 3.917 7 C -0.081 4.081 8 C 0.513 3.487 9 O -0.577 6.577 10 N -0.718 5.718 11 C 0.148 3.852 12 C -0.086 4.086 13 H 0.099 0.901 14 C 0.138 3.862 15 N -0.629 5.629 16 C -0.239 4.239 17 H 0.079 0.921 18 C -0.069 4.069 19 N -0.948 5.948 20 Si 0.980 3.020 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.280 1.280 24 C 0.163 3.837 25 C -0.103 4.103 26 H 0.061 0.939 27 C -0.126 4.126 28 N -0.462 5.462 29 C 0.004 3.996 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.166 0.834 34 H 0.181 0.819 35 H 0.153 0.847 36 H 0.126 0.874 37 H 0.415 0.585 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.016 0.984 42 H 0.247 0.753 43 H 0.067 0.933 44 H -0.008 1.008 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.051 0.949 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 -27.889 6.197 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.017 3.983 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.056 4.056 7 C -0.121 4.121 8 C 0.300 3.700 9 O -0.456 6.456 10 N -0.371 5.371 11 C 0.023 3.977 12 C -0.106 4.106 13 H 0.117 0.883 14 C 0.013 3.987 15 N -0.355 5.355 16 C -0.368 4.368 17 H 0.097 0.903 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.808 3.192 21 H -0.202 1.202 22 H -0.219 1.219 23 H -0.206 1.206 24 C 0.038 3.962 25 C -0.123 4.123 26 H 0.079 0.921 27 C -0.184 4.184 28 N -0.171 5.171 29 C -0.154 4.154 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.183 0.817 34 H 0.198 0.802 35 H 0.170 0.830 36 H 0.144 0.856 37 H 0.252 0.748 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.034 0.966 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.010 0.990 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.623 -27.486 5.658 28.296 hybrid contribution -0.326 0.855 0.530 1.057 sum 3.297 -26.632 6.188 27.539 Atomic orbital electron populations 1.23379 0.76362 1.05971 1.02152 1.86041 1.23433 1.25686 1.88497 1.20269 0.94073 0.85729 0.98190 1.21272 0.91454 0.99925 1.01583 1.22180 1.02924 0.90592 0.97874 1.20906 0.89061 0.95926 0.99751 1.20664 1.03239 0.90378 0.97836 1.20965 0.80827 0.81741 0.86494 1.90707 1.35024 1.71009 1.48897 1.45933 1.46705 1.13636 1.30847 1.21082 0.97197 0.89814 0.89572 1.22323 1.00774 0.92351 0.95110 0.88260 1.21512 0.96993 0.84761 0.95458 1.44816 1.74605 1.05793 1.10307 1.19409 1.34159 0.88222 0.95045 0.90324 1.25639 1.02628 1.00259 0.97621 1.70054 1.54769 1.22642 1.12301 0.85133 0.78300 0.78378 0.77401 1.20250 1.21935 1.20578 1.21744 0.96108 0.93325 0.85046 1.22442 0.99324 0.95713 0.94831 0.92075 1.21593 0.98532 1.01723 0.96539 1.67250 1.13167 1.27491 1.09214 1.23046 1.01170 0.87167 1.04040 0.91652 0.92284 0.85593 0.81657 0.80170 0.82956 0.85592 0.74810 0.93984 0.91106 0.95025 0.96593 0.94376 0.91521 0.98967 0.92274 0.90994 0.92945 0.82057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 113.37 1.11 1.27 16 2 O -0.32 -5.58 10.51 -92.49 -0.97 -6.55 16 3 C 0.07 1.28 6.71 22.60 0.15 1.43 16 4 C -0.12 -1.86 10.13 22.56 0.23 -1.63 16 5 C -0.12 -1.73 9.70 22.35 0.22 -1.51 16 6 C 0.08 1.74 5.76 42.56 0.25 1.99 16 7 C -0.08 -1.31 6.10 29.10 0.18 -1.13 16 8 C 0.51 13.02 7.76 87.66 0.68 13.70 16 9 O -0.58 -20.62 15.34 -3.01 -0.05 -20.66 16 10 N -0.72 -16.49 5.47 -463.05 -2.53 -19.02 16 11 C 0.15 4.23 5.02 86.38 0.43 4.66 16 12 C -0.09 -2.72 2.42 -9.60 -0.02 -2.75 16 13 H 0.10 2.73 8.01 -2.39 -0.02 2.71 16 14 C 0.14 5.51 6.76 86.73 0.59 6.10 16 15 N -0.63 -32.59 3.39 -691.97 -2.35 -34.94 16 16 C -0.24 -13.58 10.27 84.03 0.86 -12.72 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 18 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 19 N -0.95 -57.01 10.09 21.65 0.22 -56.79 16 20 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 C 0.16 8.00 5.35 86.86 0.47 8.46 16 25 C -0.10 -3.77 3.09 -9.40 -0.03 -3.80 16 26 H 0.06 2.36 8.05 -2.38 -0.02 2.34 16 27 C -0.13 -3.68 9.29 71.98 0.67 -3.01 16 28 N -0.46 -12.52 9.23 -183.49 -1.69 -14.21 16 29 C 0.00 0.09 10.22 84.80 0.87 0.96 16 30 H 0.06 0.58 7.68 -2.38 -0.02 0.56 16 31 H 0.06 0.61 7.68 -2.39 -0.02 0.59 16 32 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.18 1.13 7.95 -2.91 -0.02 1.11 16 35 H 0.15 1.04 7.87 -2.39 -0.02 1.02 16 36 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.42 7.04 8.47 -92.71 -0.79 6.26 16 38 H 0.04 1.44 7.94 -2.39 -0.02 1.42 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.02 0.67 7.69 -2.39 -0.02 0.65 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.07 3.81 5.87 -2.39 -0.01 3.79 16 44 H -0.01 -0.40 8.04 -2.39 -0.02 -0.42 16 45 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 48 H 0.16 3.13 6.32 -2.91 -0.02 3.11 16 Total: -1.00 -81.38 391.53 1.94 -79.44 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.18 Total: 16.02 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 7.11 Total: 8.53 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -6.36 Total: -124.96 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -1.02 Total: -27.21 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -81.38 1.94 -79.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102279688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.155 kcal (2) G-P(sol) polarization free energy of solvation -81.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds