Wall clock time and date at job start Tue Mar 31 2020 17:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 110.63947 * 2 1 4 4 C 1.54319 * 110.87004 * 236.74975 * 2 1 3 5 5 N 1.47022 * 107.27276 * 219.37373 * 4 2 1 6 6 C 1.36933 * 125.64688 * 178.99082 * 5 4 2 7 7 H 1.07999 * 119.99966 * 174.78683 * 6 5 4 8 8 C 1.38815 * 120.00478 * 354.78846 * 6 5 4 9 9 N 1.31620 * 119.99411 * 7.04957 * 8 6 5 10 10 Si 1.86798 * 120.00098 * 187.05751 * 8 6 5 11 11 H 1.48499 * 109.47431 * 94.98544 * 10 8 6 12 12 H 1.48504 * 109.46905 * 214.98401 * 10 8 6 13 13 H 1.48493 * 109.47300 * 334.98292 * 10 8 6 14 14 C 1.47419 * 108.70213 * 358.94135 * 5 4 2 15 15 C 1.54909 * 104.83335 * 24.13144 * 14 5 4 16 16 H 1.09001 * 111.04073 * 81.07218 * 15 14 5 17 17 C 1.52997 * 111.00791 * 204.91435 * 15 14 5 18 18 N 1.46503 * 109.47099 * 287.19783 * 17 15 14 19 19 C 1.34777 * 119.99791 * 179.72370 * 18 17 15 20 20 O 1.21276 * 120.00510 * 0.27359 * 19 18 17 21 21 C 1.50710 * 119.99620 * 180.27092 * 19 18 17 22 22 O 1.42899 * 109.46535 * 179.97438 * 21 19 18 23 23 C 1.42910 * 113.99397 * 179.97438 * 22 21 19 24 24 C 1.50697 * 109.46742 * 180.02562 * 23 22 21 25 25 C 1.38674 * 120.42079 * 269.72678 * 24 23 22 26 26 C 1.38627 * 118.42326 * 179.78687 * 25 24 23 27 27 C 1.38231 * 119.15978 * 0.51033 * 26 25 24 28 28 N 1.31858 * 120.76216 * 359.72996 * 27 26 25 29 29 C 1.31884 * 121.72488 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47034 * 296.85429 * 1 2 3 31 31 H 1.08994 * 109.47251 * 56.85504 * 1 2 3 32 32 H 1.08995 * 109.47330 * 176.85675 * 1 2 3 33 33 H 1.08999 * 109.88452 * 338.79472 * 4 2 1 34 34 H 1.09003 * 109.87819 * 99.95891 * 4 2 1 35 35 H 0.97001 * 119.99382 * 180.02562 * 9 8 6 36 36 H 1.08996 * 110.37411 * 265.28917 * 14 5 4 37 37 H 1.09002 * 110.36670 * 142.96318 * 14 5 4 38 38 H 1.08995 * 109.47730 * 167.19179 * 17 15 14 39 39 H 1.09005 * 109.47056 * 47.18981 * 17 15 14 40 40 H 0.96996 * 119.99649 * 359.97438 * 18 17 15 41 41 H 1.08997 * 109.47111 * 299.99764 * 21 19 18 42 42 H 1.09000 * 109.46846 * 59.99898 * 21 19 18 43 43 H 1.08990 * 109.47291 * 300.00384 * 23 22 21 44 44 H 1.09003 * 109.46289 * 60.00656 * 23 22 21 45 45 H 1.08000 * 120.78867 * 0.02562 * 25 24 23 46 46 H 1.07996 * 120.42727 * 180.21843 * 26 25 24 47 47 H 1.07996 * 119.62459 * 179.75129 * 27 26 25 48 48 H 1.08000 * 119.62011 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5471 -0.7353 6 6 4.0124 -2.3917 -1.4965 7 1 4.9035 -2.8376 -1.0799 8 6 3.6409 -2.6748 -2.8037 9 7 2.6373 -2.0277 -3.3573 10 14 4.5648 -3.9744 -3.7767 11 1 3.8534 -5.2733 -3.6679 12 1 4.6362 -3.5671 -5.2031 13 1 5.9394 -4.1158 -3.2330 14 6 3.4652 -1.2447 0.6913 15 6 2.0790 -0.7935 1.2151 16 1 1.4464 -1.6526 1.4387 17 6 2.2236 0.1110 2.4406 18 7 2.6288 -0.6933 3.5961 19 6 2.8235 -0.1039 4.7924 20 8 2.6585 1.0914 4.9136 21 6 3.2463 -0.9304 5.9796 22 8 3.3870 -0.0847 7.1228 23 6 3.7867 -0.7733 8.3096 24 6 3.9029 0.2098 9.4458 25 6 5.1064 0.8500 9.7002 26 6 5.1655 1.7498 10.7530 27 6 4.0337 1.9694 11.5156 28 7 2.9071 1.3388 11.2477 29 6 2.8128 0.4808 10.2506 30 1 -0.3633 0.4642 0.9169 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 1.3189 -1.4773 -1.5770 34 1 2.3775 -0.1015 -1.9963 35 1 2.3774 -2.2258 -4.2706 36 1 4.1929 -0.4411 0.8030 37 1 3.7992 -2.1365 1.2217 38 1 1.2692 0.5938 2.6507 39 1 2.9797 0.8711 2.2440 40 1 2.7605 -1.6494 3.4992 41 1 2.4915 -1.6907 6.1804 42 1 4.2000 -1.4128 5.7653 43 1 3.0427 -1.5298 8.5587 44 1 4.7514 -1.2530 8.1436 45 1 5.9760 0.6551 9.0901 46 1 6.0854 2.2691 10.9777 47 1 4.0724 2.6658 12.3402 48 1 1.8730 -0.0165 10.0614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102532826.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:34 Heat of formation + Delta-G solvation = -23.900906 kcal Electronic energy + Delta-G solvation = -27358.142959 eV Core-core repulsion = 23413.797377 eV Total energy + Delta-G solvation = -3944.345582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.58333 -39.82776 -38.25642 -37.58485 -34.67708 -33.34608 -32.96951 -32.15546 -30.76301 -29.98013 -28.15808 -26.44376 -25.85496 -24.84958 -23.96690 -22.75641 -22.42721 -20.79592 -20.03805 -19.25006 -17.70776 -17.29196 -17.14929 -17.08066 -16.73538 -16.17532 -15.70178 -15.63048 -14.98794 -14.70734 -14.37354 -14.12037 -14.05695 -13.79472 -13.48374 -13.42292 -13.32764 -12.94432 -12.61370 -12.54822 -12.43032 -11.84316 -11.77847 -11.69316 -11.39206 -11.25081 -10.83268 -10.81375 -10.25793 -10.19706 -10.16501 -10.02388 -10.00774 -9.93668 -9.82031 -9.68980 -9.58252 -9.44465 -9.00195 -8.60451 -6.85359 -5.75062 -3.07469 0.62097 0.88593 2.57556 2.68718 3.37384 3.39660 3.42599 3.44897 3.82670 4.09757 4.34906 4.39929 4.46632 4.55735 4.58647 4.63922 4.81330 4.87165 4.91620 4.97041 5.08250 5.18442 5.21363 5.31261 5.36224 5.50484 5.53907 5.69527 5.73822 5.82876 5.84882 6.00552 6.08180 6.16736 6.26217 6.27411 6.38983 6.46688 6.54260 6.59093 6.63670 6.74647 6.91846 7.48528 7.54164 7.57189 7.62921 7.81375 8.19898 8.23450 9.19141 9.79784 10.46396 11.36880 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023057 B = 0.001762 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.087439 B =15884.610364 C =16687.759276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.067 0.933 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.142 3.858 15 C -0.112 4.112 16 H 0.081 0.919 17 C 0.134 3.866 18 N -0.723 5.723 19 C 0.511 3.489 20 O -0.524 6.524 21 C 0.043 3.957 22 O -0.357 6.357 23 C 0.105 3.895 24 C -0.141 4.141 25 C -0.053 4.053 26 C -0.176 4.176 27 C 0.103 3.897 28 N -0.488 5.488 29 C 0.122 3.878 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.252 0.748 36 H 0.018 0.982 37 H 0.036 0.964 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.402 0.598 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.157 0.843 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 2.103 25.858 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.332 5.332 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.099 0.901 17 C 0.011 3.989 18 N -0.376 5.376 19 C 0.295 3.705 20 O -0.399 6.399 21 C -0.037 4.037 22 O -0.275 6.275 23 C 0.028 3.972 24 C -0.143 4.143 25 C -0.079 4.079 26 C -0.196 4.196 27 C -0.054 4.054 28 N -0.196 5.196 29 C -0.035 4.035 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.154 0.846 46 H 0.155 0.845 47 H 0.174 0.826 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.477 3.273 26.231 26.438 hybrid contribution 1.416 -1.586 -1.254 2.468 sum 1.892 1.687 24.977 25.105 Atomic orbital electron populations 1.21692 0.95277 1.01622 1.00601 1.22437 0.95185 0.99137 0.96288 0.91423 1.21230 0.89185 0.93058 0.90721 1.44464 1.32584 1.51741 1.04454 1.19046 1.04351 1.18604 0.93863 0.90490 1.24825 0.98513 0.99904 0.97112 1.69980 1.30092 1.42695 1.13815 0.86128 0.78878 0.81523 0.79419 1.21644 1.21763 1.20676 1.21588 0.93001 0.97014 0.86863 1.22678 0.99423 0.98070 0.93057 0.90089 1.21415 1.00222 0.93737 0.83526 1.45960 1.70253 1.12330 1.09077 1.20150 0.78027 0.88486 0.83810 1.90738 1.49799 1.15027 1.84318 1.22253 1.02090 0.93144 0.86232 1.88103 1.89501 1.33435 1.16460 1.21269 1.00084 0.92585 0.83274 1.20567 0.95222 1.00693 0.97849 1.21559 0.97629 0.93163 0.95510 1.22175 1.00600 0.99821 0.96976 1.22858 0.88134 0.96362 0.98066 1.67749 1.27135 1.07229 1.17530 1.22723 0.97742 0.93200 0.89851 0.93633 0.92751 0.92708 0.93133 0.94231 0.93742 0.96393 0.94586 0.91544 0.91322 0.76381 0.90026 0.89983 0.91654 0.91799 0.84570 0.84489 0.82598 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.17 37.16 0.34 -1.71 16 2 C -0.11 -1.97 3.01 -88.78 -0.27 -2.23 16 3 H 0.07 1.18 8.04 -51.94 -0.42 0.76 16 4 C 0.18 4.30 4.98 -3.07 -0.02 4.29 16 5 N -0.61 -15.02 3.39 -170.08 -0.58 -15.60 16 6 C -0.23 -6.29 10.27 -15.06 -0.15 -6.45 16 7 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 8 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 9 N -0.92 -26.62 10.36 55.49 0.57 -26.05 16 10 Si 0.91 21.75 29.56 -169.99 -5.02 16.72 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 14 C 0.14 2.74 6.65 -2.53 -0.02 2.73 16 15 C -0.11 -1.79 2.49 -88.47 -0.22 -2.01 16 16 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 17 C 0.13 1.89 5.13 -4.04 -0.02 1.87 16 18 N -0.72 -8.54 5.50 -60.29 -0.33 -8.87 16 19 C 0.51 6.65 7.91 -10.98 -0.09 6.57 16 20 O -0.52 -9.37 16.50 -14.35 -0.24 -9.61 16 21 C 0.04 0.38 6.42 36.01 0.23 0.61 16 22 O -0.36 -3.96 9.86 -55.14 -0.54 -4.51 16 23 C 0.10 0.77 6.09 36.00 0.22 0.99 16 24 C -0.14 -1.21 5.53 -104.48 -0.58 -1.79 16 25 C -0.05 -0.40 9.86 -39.28 -0.39 -0.79 16 26 C -0.18 -1.22 10.11 -39.44 -0.40 -1.61 16 27 C 0.10 0.81 11.18 -17.54 -0.20 0.62 16 28 N -0.49 -4.96 10.36 -13.25 -0.14 -5.09 16 29 C 0.12 1.12 10.86 -17.55 -0.19 0.93 16 30 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.05 1.31 6.93 -51.93 -0.36 0.95 16 34 H 0.04 1.05 7.61 -51.93 -0.40 0.65 16 35 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 40 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 44 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 45 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 47 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 48 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -35.64 398.34 -9.90 -45.54 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.79 Total: -0.25 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.84 Total: 1.70 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.47 Total: -55.61 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.78 Total: -14.11 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.64 -9.90 -45.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102532826.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.641 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds