Wall clock time and date at job start Tue Mar 31 2020 17:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 110.63947 * 2 1 4 4 C 1.54319 * 110.87004 * 236.74975 * 2 1 3 5 5 N 1.47022 * 107.27276 * 219.37373 * 4 2 1 6 6 C 1.36933 * 125.64688 * 178.99082 * 5 4 2 7 7 H 1.07999 * 119.99966 * 174.78683 * 6 5 4 8 8 C 1.38815 * 120.00478 * 354.78846 * 6 5 4 9 9 N 1.31620 * 119.99411 * 7.04957 * 8 6 5 10 10 Si 1.86798 * 120.00098 * 187.05751 * 8 6 5 11 11 H 1.48499 * 109.47431 * 94.98544 * 10 8 6 12 12 H 1.48504 * 109.46905 * 214.98401 * 10 8 6 13 13 H 1.48493 * 109.47300 * 334.98292 * 10 8 6 14 14 C 1.47419 * 108.70213 * 358.94135 * 5 4 2 15 15 C 1.54909 * 104.83335 * 24.13144 * 14 5 4 16 16 H 1.09001 * 111.04073 * 81.07218 * 15 14 5 17 17 C 1.52997 * 111.00791 * 204.91435 * 15 14 5 18 18 N 1.46503 * 109.47099 * 287.19783 * 17 15 14 19 19 C 1.34777 * 119.99791 * 179.72370 * 18 17 15 20 20 O 1.21276 * 120.00510 * 0.27359 * 19 18 17 21 21 C 1.50710 * 119.99620 * 180.27092 * 19 18 17 22 22 O 1.42899 * 109.46535 * 179.97438 * 21 19 18 23 23 C 1.42910 * 113.99397 * 179.97438 * 22 21 19 24 24 C 1.50697 * 109.46742 * 180.02562 * 23 22 21 25 25 C 1.38674 * 120.42079 * 269.72678 * 24 23 22 26 26 C 1.38627 * 118.42326 * 179.78687 * 25 24 23 27 27 C 1.38231 * 119.15978 * 0.51033 * 26 25 24 28 28 N 1.31858 * 120.76216 * 359.72996 * 27 26 25 29 29 C 1.31884 * 121.72488 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47034 * 296.85429 * 1 2 3 31 31 H 1.08994 * 109.47251 * 56.85504 * 1 2 3 32 32 H 1.08995 * 109.47330 * 176.85675 * 1 2 3 33 33 H 1.08999 * 109.88452 * 338.79472 * 4 2 1 34 34 H 1.09003 * 109.87819 * 99.95891 * 4 2 1 35 35 H 0.97001 * 119.99382 * 180.02562 * 9 8 6 36 36 H 1.08996 * 110.37411 * 265.28917 * 14 5 4 37 37 H 1.09002 * 110.36670 * 142.96318 * 14 5 4 38 38 H 1.08995 * 109.47730 * 167.19179 * 17 15 14 39 39 H 1.09005 * 109.47056 * 47.18981 * 17 15 14 40 40 H 0.96996 * 119.99649 * 359.97438 * 18 17 15 41 41 H 1.08997 * 109.47111 * 299.99764 * 21 19 18 42 42 H 1.09000 * 109.46846 * 59.99898 * 21 19 18 43 43 H 1.08990 * 109.47291 * 300.00384 * 23 22 21 44 44 H 1.09003 * 109.46289 * 60.00656 * 23 22 21 45 45 H 1.08000 * 120.78867 * 0.02562 * 25 24 23 46 46 H 1.07996 * 120.42727 * 180.21843 * 26 25 24 47 47 H 1.07996 * 119.62459 * 179.75129 * 27 26 25 48 48 H 1.08000 * 119.62011 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5471 -0.7353 6 6 4.0124 -2.3917 -1.4965 7 1 4.9035 -2.8376 -1.0799 8 6 3.6409 -2.6748 -2.8037 9 7 2.6373 -2.0277 -3.3573 10 14 4.5648 -3.9744 -3.7767 11 1 3.8534 -5.2733 -3.6679 12 1 4.6362 -3.5671 -5.2031 13 1 5.9394 -4.1158 -3.2330 14 6 3.4652 -1.2447 0.6913 15 6 2.0790 -0.7935 1.2151 16 1 1.4464 -1.6526 1.4387 17 6 2.2236 0.1110 2.4406 18 7 2.6288 -0.6933 3.5961 19 6 2.8235 -0.1039 4.7924 20 8 2.6585 1.0914 4.9136 21 6 3.2463 -0.9304 5.9796 22 8 3.3870 -0.0847 7.1228 23 6 3.7867 -0.7733 8.3096 24 6 3.9029 0.2098 9.4458 25 6 5.1064 0.8500 9.7002 26 6 5.1655 1.7498 10.7530 27 6 4.0337 1.9694 11.5156 28 7 2.9071 1.3388 11.2477 29 6 2.8128 0.4808 10.2506 30 1 -0.3633 0.4642 0.9169 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0563 33 1 1.3189 -1.4773 -1.5770 34 1 2.3775 -0.1015 -1.9963 35 1 2.3774 -2.2258 -4.2706 36 1 4.1929 -0.4411 0.8030 37 1 3.7992 -2.1365 1.2217 38 1 1.2692 0.5938 2.6507 39 1 2.9797 0.8711 2.2440 40 1 2.7605 -1.6494 3.4992 41 1 2.4915 -1.6907 6.1804 42 1 4.2000 -1.4128 5.7653 43 1 3.0427 -1.5298 8.5587 44 1 4.7514 -1.2530 8.1436 45 1 5.9760 0.6551 9.0901 46 1 6.0854 2.2691 10.9777 47 1 4.0724 2.6658 12.3402 48 1 1.8730 -0.0165 10.0614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102532826.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:33 Heat of formation + Delta-G solvation = -47.839005 kcal Electronic energy + Delta-G solvation = -27359.180993 eV Core-core repulsion = 23413.797377 eV Total energy + Delta-G solvation = -3945.383616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.17231 -40.83714 -39.62426 -38.45850 -36.02077 -34.66890 -33.92737 -32.70937 -32.53841 -31.23109 -29.13977 -27.77806 -27.05273 -26.20043 -24.53510 -24.32038 -22.97579 -21.93251 -21.58767 -20.69575 -18.89417 -18.34804 -17.99861 -17.84672 -17.67541 -17.03119 -16.81677 -16.51663 -16.30061 -15.90917 -15.61136 -15.50530 -14.94256 -14.73302 -14.64669 -14.43900 -14.25018 -14.13698 -13.98230 -13.43719 -13.38501 -13.22585 -13.07594 -12.98956 -12.84300 -12.67318 -12.40432 -12.32092 -11.92053 -11.83921 -11.55633 -11.39807 -11.35856 -10.89100 -10.76648 -10.73726 -10.67233 -10.40367 -10.07594 -10.03823 -8.87536 -7.84651 -5.18898 0.05376 0.31919 1.46851 1.48181 1.57121 1.61745 1.87918 2.50351 2.74519 3.20324 3.33231 3.55587 3.62950 3.69913 3.84940 3.88453 3.94099 3.95389 3.97306 4.06482 4.08234 4.28088 4.34489 4.39247 4.45070 4.51211 4.51607 4.61400 4.71907 4.75381 4.83235 4.84877 4.87156 4.98779 5.09702 5.16277 5.16774 5.28979 5.35137 5.38954 5.49289 5.50894 5.72030 5.74669 5.83088 6.03994 6.21634 6.59221 6.98965 7.11590 7.26277 7.79785 8.44824 9.26131 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023057 B = 0.001762 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.087439 B =15884.610364 C =16687.759276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.071 0.929 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.242 4.242 7 H 0.084 0.916 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.977 3.023 11 H -0.286 1.286 12 H -0.298 1.298 13 H -0.267 1.267 14 C 0.137 3.863 15 C -0.089 4.089 16 H 0.093 0.907 17 C 0.146 3.854 18 N -0.712 5.712 19 C 0.507 3.493 20 O -0.580 6.580 21 C 0.047 3.953 22 O -0.393 6.393 23 C 0.104 3.896 24 C -0.154 4.154 25 C -0.064 4.064 26 C -0.175 4.175 27 C 0.088 3.912 28 N -0.520 5.520 29 C 0.102 3.898 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.019 0.981 34 H -0.005 1.005 35 H 0.246 0.754 36 H 0.015 0.985 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.417 0.583 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.154 0.846 46 H 0.164 0.836 47 H 0.178 0.822 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 0.851 27.890 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.090 0.910 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.371 4.371 7 H 0.102 0.898 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.213 1.213 12 H -0.225 1.225 13 H -0.192 1.192 14 C 0.012 3.988 15 C -0.108 4.108 16 H 0.112 0.888 17 C 0.022 3.978 18 N -0.366 5.366 19 C 0.294 3.706 20 O -0.459 6.459 21 C -0.032 4.032 22 O -0.313 6.313 23 C 0.028 3.972 24 C -0.156 4.156 25 C -0.090 4.090 26 C -0.194 4.194 27 C -0.068 4.068 28 N -0.229 5.229 29 C -0.054 4.054 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.013 0.987 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.171 0.829 46 H 0.182 0.818 47 H 0.195 0.805 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.336 1.979 28.302 28.403 hybrid contribution 1.219 -1.152 -1.851 2.498 sum 2.555 0.827 26.451 26.587 Atomic orbital electron populations 1.21635 0.93014 1.01731 1.02099 1.22318 0.96974 0.98527 0.94477 0.91043 1.20981 0.88309 0.91901 0.92189 1.44798 1.32517 1.51472 1.06718 1.19468 1.04749 1.18470 0.94366 0.89808 1.25670 0.99835 1.02109 0.98397 1.70207 1.31826 1.44182 1.13656 0.85083 0.78288 0.78776 0.77340 1.21282 1.22525 1.19180 1.21779 0.94984 0.97642 0.84386 1.22463 0.97120 0.98322 0.92904 0.88845 1.21117 1.00177 0.93104 0.83433 1.45814 1.69577 1.12905 1.08289 1.20950 0.76657 0.88140 0.84809 1.90717 1.52344 1.17619 1.85203 1.22355 1.04523 0.92330 0.83999 1.88048 1.90040 1.35381 1.17817 1.21448 1.01818 0.92325 0.81606 1.20808 0.95313 1.01219 0.98226 1.21917 0.98062 0.93126 0.95924 1.22505 1.01290 0.99380 0.96254 1.23317 0.88025 0.96561 0.98920 1.67730 1.28487 1.08218 1.18448 1.22969 0.98610 0.93634 0.90227 0.90675 0.92886 0.93116 0.96295 0.98653 0.94500 0.96698 0.92803 0.91011 0.92743 0.74591 0.86643 0.87005 0.89613 0.89681 0.82873 0.81820 0.80493 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.17 71.98 0.66 -3.05 16 2 C -0.10 -3.61 3.01 -9.60 -0.03 -3.64 16 3 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 4 C 0.19 9.28 4.98 86.73 0.43 9.72 16 5 N -0.63 -31.41 3.39 -692.01 -2.35 -33.75 16 6 C -0.24 -13.26 10.27 84.03 0.86 -12.40 16 7 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 8 C -0.07 -3.78 5.48 84.86 0.46 -3.32 16 9 N -0.95 -56.96 10.36 21.65 0.22 -56.74 16 10 Si 0.98 45.13 29.56 68.60 2.03 47.16 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 14 C 0.14 5.13 6.65 86.86 0.58 5.71 16 15 C -0.09 -2.65 2.49 -9.40 -0.02 -2.67 16 16 H 0.09 2.63 8.05 -2.39 -0.02 2.61 16 17 C 0.15 3.79 5.13 86.38 0.44 4.23 16 18 N -0.71 -14.80 5.50 -463.05 -2.55 -17.35 16 19 C 0.51 12.08 7.91 87.66 0.69 12.77 16 20 O -0.58 -20.28 16.50 16.02 0.26 -20.02 16 21 C 0.05 0.68 6.42 71.24 0.46 1.13 16 22 O -0.39 -7.87 9.86 -129.94 -1.28 -9.15 16 23 C 0.10 1.26 6.09 71.23 0.43 1.69 16 24 C -0.15 -2.43 5.53 -19.77 -0.11 -2.54 16 25 C -0.06 -0.89 9.86 22.47 0.22 -0.67 16 26 C -0.17 -2.14 10.11 22.36 0.23 -1.92 16 27 C 0.09 1.32 11.18 84.69 0.95 2.27 16 28 N -0.52 -10.47 10.36 -195.84 -2.03 -12.50 16 29 C 0.10 1.84 10.86 84.67 0.92 2.76 16 30 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.02 1.02 6.93 -2.39 -0.02 1.01 16 34 H 0.00 -0.27 7.61 -2.39 -0.02 -0.29 16 35 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.02 0.59 7.91 -2.39 -0.02 0.57 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 1.85 8.08 -2.39 -0.02 1.84 16 39 H 0.05 1.61 7.96 -2.38 -0.02 1.59 16 40 H 0.42 6.22 8.47 -92.71 -0.79 5.43 16 41 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 0.65 8.09 -2.39 -0.02 0.63 16 44 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 45 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 46 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 47 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 48 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -81.26 398.34 1.65 -79.61 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.16 Total: 12.66 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 7.18 Total: 10.09 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -6.70 Total: -120.34 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.02 Total: -29.17 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -81.26 1.65 -79.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102532826.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.772 kcal (2) G-P(sol) polarization free energy of solvation -81.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds