Wall clock time and date at job start Tue Mar 31 2020 17:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46676 * 90.00727 * 10 8 6 12 12 H 1.48502 * 109.46977 * 210.00025 * 10 8 6 13 13 H 1.48494 * 109.47494 * 330.00753 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21686 * 120.00404 * 359.97438 * 20 19 18 22 22 C 1.46727 * 119.99677 * 179.97438 * 20 19 18 23 23 C 1.36341 * 126.64346 * 0.02646 * 22 20 19 24 24 N 1.33693 * 107.45091 * 179.97438 * 23 22 20 25 25 C 1.30618 * 108.99711 * 359.97438 * 24 23 22 26 26 C 1.50700 * 125.42322 * 180.02562 * 25 24 23 27 27 C 1.52994 * 117.50271 * 8.59708 * 26 25 24 28 28 C 1.52996 * 117.49733 * 299.97165 * 26 25 24 29 29 O 1.33667 * 109.15463 * 359.75566 * 25 24 23 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 39 39 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 40 40 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 41 41 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 42 42 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 43 43 H 1.07994 * 126.27191 * 359.97438 * 23 22 20 44 44 H 1.09003 * 115.55017 * 154.30993 * 26 25 24 45 45 H 1.09000 * 117.49549 * 0.02562 * 27 26 25 46 46 H 1.09000 * 117.50079 * 145.01970 * 27 26 25 47 47 H 1.09002 * 117.49792 * 214.97847 * 28 26 25 48 48 H 1.08996 * 117.50114 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 5.6572 -3.3841 -4.4402 12 1 5.5988 -1.1482 -5.3774 13 1 6.9988 -1.6208 -3.4545 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3960 -1.6329 6.0780 22 6 3.3149 0.4187 7.1750 23 6 3.1025 1.7641 7.2336 24 7 3.3388 2.1530 8.4907 25 6 3.6838 1.1119 9.2001 26 6 4.0319 1.1303 10.6662 27 6 3.7859 2.4303 11.4345 28 6 5.2150 1.9977 11.1005 29 8 3.6732 0.0266 8.4199 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9836 0.8519 2.2422 39 1 1.2757 0.5631 2.6523 40 1 1.9108 -1.5272 3.8253 41 1 3.6187 -1.2383 3.4154 42 1 2.6254 1.0460 4.7454 43 1 2.7989 2.3993 6.4146 44 1 3.8730 0.1927 11.1989 45 1 3.3719 3.2721 10.8795 46 1 3.4648 2.3482 12.4729 47 1 5.8341 1.6310 11.9193 48 1 5.7413 2.5554 10.3259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103099015.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:57 Heat of formation + Delta-G solvation = 32.958300 kcal Electronic energy + Delta-G solvation = -27563.161368 eV Core-core repulsion = 23621.281387 eV Total energy + Delta-G solvation = -3941.879982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.83568 -39.79014 -38.17975 -37.82031 -35.64172 -35.03365 -33.33351 -31.74969 -30.73629 -30.28672 -27.10530 -25.81654 -25.19046 -24.04115 -23.69066 -22.94303 -22.11176 -21.24842 -20.96014 -19.78758 -19.29472 -18.49847 -17.44598 -17.17259 -16.86556 -16.23820 -15.71023 -15.35009 -15.17312 -15.02969 -14.70632 -14.37590 -13.81529 -13.64169 -13.56446 -13.01060 -12.89168 -12.84218 -12.17573 -12.12487 -12.08033 -11.98510 -11.71838 -11.51778 -11.44533 -11.34459 -11.16833 -11.13162 -11.06625 -10.85205 -10.76146 -10.42816 -10.10449 -9.91270 -9.84393 -9.72589 -9.45519 -9.34244 -9.15549 -8.63358 -6.80457 -5.63533 -3.04877 0.41443 1.68790 1.90961 2.81775 3.02459 3.20816 3.40956 3.46016 3.47752 3.53078 4.10061 4.20297 4.32300 4.41008 4.44491 4.50411 4.80315 5.00504 5.03454 5.07632 5.21875 5.23056 5.26440 5.43156 5.45098 5.49926 5.53751 5.57022 5.62535 5.69478 5.71940 5.86073 5.92733 6.05827 6.17120 6.23240 6.25223 6.31285 6.54855 6.61344 6.68702 6.82096 7.00054 7.02358 7.18679 7.56529 7.65550 7.78987 7.88385 8.38650 9.24538 9.85487 10.50704 11.40157 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.001847 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.168798 B =15159.958898 C =15838.904175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.605 5.605 6 C -0.221 4.221 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.139 3.861 15 C -0.093 4.093 16 H 0.073 0.927 17 C -0.117 4.117 18 C 0.120 3.880 19 N -0.708 5.708 20 C 0.597 3.403 21 O -0.519 6.519 22 C -0.095 4.095 23 C 0.025 3.975 24 N -0.485 5.485 25 C 0.246 3.754 26 C -0.089 4.089 27 C -0.143 4.143 28 C -0.152 4.152 29 O -0.165 6.165 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.251 0.749 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.402 0.598 43 H 0.195 0.805 44 H 0.138 0.862 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 9.317 26.933 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.087 0.913 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.571 5.571 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.092 0.908 17 C -0.155 4.155 18 C -0.002 4.002 19 N -0.361 5.361 20 C 0.381 3.619 21 O -0.395 6.395 22 C -0.151 4.151 23 C -0.118 4.118 24 N -0.214 5.214 25 C 0.041 3.959 26 C -0.109 4.109 27 C -0.180 4.180 28 C -0.190 4.190 29 O -0.049 6.049 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.029 0.971 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.237 0.763 43 H 0.212 0.788 44 H 0.156 0.844 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.870 8.946 27.015 28.602 hybrid contribution 0.627 -0.598 -1.008 1.329 sum -2.243 8.348 26.008 27.406 Atomic orbital electron populations 1.21636 0.95739 1.01157 1.00581 1.22631 0.94373 0.99365 0.97042 0.91340 1.21969 0.84070 0.95874 0.94731 1.44498 1.10526 1.78935 0.99140 1.19089 0.90986 1.37627 0.87235 0.90556 1.24783 0.97287 1.02096 0.96621 1.69800 1.22417 1.53931 1.10984 0.86083 0.81258 0.77845 0.80388 1.21663 1.21676 1.20734 1.21384 0.93648 0.97250 0.86453 1.22153 0.98272 0.97625 0.93175 0.90821 1.21812 1.01699 0.98565 0.93423 1.21658 1.02881 0.93195 0.82453 1.45659 1.69366 1.12658 1.08421 1.16271 0.78307 0.86185 0.81091 1.90905 1.49285 1.14764 1.84541 1.22801 1.11444 0.95188 0.85703 1.23699 1.00494 0.92215 0.95417 1.70281 1.17840 1.29805 1.03450 1.25459 0.96910 0.78871 0.94652 1.20195 1.07509 0.99281 0.83871 1.23132 0.98635 0.95670 1.00594 1.23166 0.91215 1.01077 1.03506 1.84479 1.65194 1.37244 1.17964 0.93066 0.93855 0.92780 0.87747 0.97067 0.93796 0.96228 0.95970 0.90944 0.91320 0.90825 0.90357 0.76278 0.78778 0.84447 0.86900 0.87198 0.87092 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.30 37.16 0.35 -1.62 16 2 C -0.11 -2.03 3.09 -88.47 -0.27 -2.30 16 3 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 4 C 0.16 3.77 5.36 -2.53 -0.01 3.76 16 5 N -0.61 -15.47 3.39 -170.06 -0.58 -16.04 16 6 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 9 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 10 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.14 2.83 6.25 -3.06 -0.02 2.81 16 15 C -0.09 -1.49 2.38 -88.77 -0.21 -1.70 16 16 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 17 C -0.12 -1.38 4.74 -26.73 -0.13 -1.51 16 18 C 0.12 1.43 5.56 -4.04 -0.02 1.41 16 19 N -0.71 -7.21 5.54 -61.60 -0.34 -7.55 16 20 C 0.60 7.77 7.79 -12.83 -0.10 7.67 16 21 O -0.52 -8.96 17.11 1.34 0.02 -8.94 16 22 C -0.09 -1.10 7.22 -36.84 -0.27 -1.37 16 23 C 0.03 0.23 11.37 -17.42 -0.20 0.03 16 24 N -0.48 -4.97 10.79 -10.81 -0.12 -5.09 16 25 C 0.25 2.47 7.87 -12.79 -0.10 2.37 16 26 C -0.09 -0.57 6.33 -91.78 -0.58 -1.15 16 27 C -0.14 -0.66 10.13 -26.73 -0.27 -0.94 16 28 C -0.15 -0.72 10.23 -26.73 -0.27 -1.00 16 29 O -0.16 -2.05 10.79 0.55 0.01 -2.04 16 30 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.10 2.82 5.87 -51.93 -0.31 2.52 16 34 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 35 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 38 H 0.07 0.86 7.95 -51.92 -0.41 0.44 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 42 H 0.40 2.75 7.38 -40.82 -0.30 2.45 16 43 H 0.20 1.05 7.43 -52.49 -0.39 0.66 16 44 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.11 0.65 7.87 -51.93 -0.41 0.24 16 46 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -34.70 395.49 -9.51 -44.21 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.64 Total: -1.03 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.36 Total: -0.34 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.48 Total: -55.02 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.03 Total: -10.98 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.70 -9.51 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103099015.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.169 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds