Wall clock time and date at job start Tue Mar 31 2020 17:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46676 * 90.00727 * 10 8 6 12 12 H 1.48502 * 109.46977 * 210.00025 * 10 8 6 13 13 H 1.48494 * 109.47494 * 330.00753 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21686 * 120.00404 * 359.97438 * 20 19 18 22 22 C 1.46727 * 119.99677 * 179.97438 * 20 19 18 23 23 C 1.36341 * 126.64346 * 0.02646 * 22 20 19 24 24 N 1.33693 * 107.45091 * 179.97438 * 23 22 20 25 25 C 1.30618 * 108.99711 * 359.97438 * 24 23 22 26 26 C 1.50700 * 125.42322 * 180.02562 * 25 24 23 27 27 C 1.52994 * 117.50271 * 8.59708 * 26 25 24 28 28 C 1.52996 * 117.49733 * 299.97165 * 26 25 24 29 29 O 1.33667 * 109.15463 * 359.75566 * 25 24 23 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 39 39 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 40 40 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 41 41 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 42 42 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 43 43 H 1.07994 * 126.27191 * 359.97438 * 23 22 20 44 44 H 1.09003 * 115.55017 * 154.30993 * 26 25 24 45 45 H 1.09000 * 117.49549 * 0.02562 * 27 26 25 46 46 H 1.09000 * 117.50079 * 145.01970 * 27 26 25 47 47 H 1.09002 * 117.49792 * 214.97847 * 28 26 25 48 48 H 1.08996 * 117.50114 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 5.6572 -3.3841 -4.4402 12 1 5.5988 -1.1482 -5.3774 13 1 6.9988 -1.6208 -3.4545 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3960 -1.6329 6.0780 22 6 3.3149 0.4187 7.1750 23 6 3.1025 1.7641 7.2336 24 7 3.3388 2.1530 8.4907 25 6 3.6838 1.1119 9.2001 26 6 4.0319 1.1303 10.6662 27 6 3.7859 2.4303 11.4345 28 6 5.2150 1.9977 11.1005 29 8 3.6732 0.0266 8.4199 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9836 0.8519 2.2422 39 1 1.2757 0.5631 2.6523 40 1 1.9108 -1.5272 3.8253 41 1 3.6187 -1.2383 3.4154 42 1 2.6254 1.0460 4.7454 43 1 2.7989 2.3993 6.4146 44 1 3.8730 0.1927 11.1989 45 1 3.3719 3.2721 10.8795 46 1 3.4648 2.3482 12.4729 47 1 5.8341 1.6310 11.9193 48 1 5.7413 2.5554 10.3259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103099015.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:56 Heat of formation + Delta-G solvation = 8.510150 kcal Electronic energy + Delta-G solvation = -27564.221520 eV Core-core repulsion = 23621.281387 eV Total energy + Delta-G solvation = -3942.940133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.61252 -40.80924 -39.69089 -38.27309 -36.71374 -35.93977 -35.03864 -32.91091 -32.52030 -31.27470 -28.53213 -27.47347 -26.25562 -25.24671 -24.53085 -23.47723 -23.29650 -22.11407 -21.70369 -21.39670 -20.69069 -19.36679 -18.86449 -18.17744 -17.94572 -17.28822 -17.02621 -16.54099 -15.99138 -15.88003 -15.75723 -15.63504 -15.40343 -14.95048 -14.57282 -14.46153 -14.15834 -13.70012 -13.51325 -13.36661 -13.34553 -12.87791 -12.79910 -12.78075 -12.72907 -12.45690 -12.40549 -12.21363 -12.17947 -11.94548 -11.89711 -11.77297 -11.57663 -11.47026 -11.35305 -11.24213 -10.96250 -10.73549 -10.40921 -9.90741 -8.86197 -7.76903 -5.21070 -0.39229 0.91994 1.17318 1.44735 1.46510 1.55262 1.90097 2.25117 2.49025 2.72515 2.93026 3.31451 3.40237 3.67593 3.69588 3.74819 3.77730 3.92405 3.93875 3.97156 4.08396 4.22643 4.32825 4.37846 4.53271 4.56357 4.65019 4.72891 4.76431 4.80976 4.85308 4.87436 4.95724 4.99588 5.03495 5.11452 5.12794 5.18325 5.23763 5.24631 5.32518 5.42795 5.47550 5.57006 5.79090 5.87384 6.19688 6.33761 6.42560 6.90938 7.12587 7.80874 8.44417 9.24152 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.001847 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.168798 B =15159.958898 C =15838.904175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.074 0.926 4 C 0.159 3.841 5 N -0.630 5.630 6 C -0.240 4.240 7 H 0.076 0.924 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.978 3.022 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.271 1.271 14 C 0.131 3.869 15 C -0.079 4.079 16 H 0.078 0.922 17 C -0.101 4.101 18 C 0.125 3.875 19 N -0.687 5.687 20 C 0.599 3.401 21 O -0.574 6.574 22 C -0.130 4.130 23 C 0.051 3.949 24 N -0.502 5.502 25 C 0.249 3.751 26 C -0.113 4.113 27 C -0.130 4.130 28 C -0.144 4.144 29 O -0.191 6.191 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.068 0.932 34 H -0.019 1.019 35 H 0.246 0.754 36 H 0.010 0.990 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.422 0.578 43 H 0.234 0.766 44 H 0.152 0.848 45 H 0.101 0.899 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 11.433 29.232 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.034 3.966 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.094 0.906 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.195 1.195 14 C 0.006 3.994 15 C -0.098 4.098 16 H 0.096 0.904 17 C -0.139 4.139 18 C 0.003 3.997 19 N -0.340 5.340 20 C 0.385 3.615 21 O -0.455 6.455 22 C -0.186 4.186 23 C -0.092 4.092 24 N -0.231 5.231 25 C 0.045 3.955 26 C -0.132 4.132 27 C -0.167 4.167 28 C -0.181 4.181 29 O -0.077 6.077 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.086 0.914 34 H -0.001 1.001 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.260 0.740 43 H 0.250 0.750 44 H 0.169 0.831 45 H 0.120 0.880 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.331 11.115 29.332 31.543 hybrid contribution 0.801 -1.232 -1.654 2.212 sum -2.530 9.883 27.678 29.498 Atomic orbital electron populations 1.21602 0.92985 1.01640 1.02253 1.22467 0.96489 0.98513 0.94460 0.90762 1.21794 0.83537 0.94811 0.96489 1.44850 1.10513 1.78923 1.01236 1.19445 0.91877 1.37409 0.88174 0.90614 1.25616 0.99773 1.02584 0.98065 1.70067 1.24063 1.54833 1.10730 0.85079 0.78813 0.77236 0.78215 1.21593 1.21677 1.19549 1.21609 0.96809 0.97040 0.83895 1.22054 0.95178 0.98311 0.94285 0.90369 1.21663 1.03883 0.97506 0.90802 1.21469 1.01715 0.93467 0.83091 1.45395 1.68099 1.13464 1.07085 1.16498 0.77413 0.85628 0.81968 1.90871 1.52070 1.17076 1.85458 1.22631 1.14658 0.95897 0.85367 1.24316 0.97521 0.91429 0.95921 1.70370 1.18880 1.29867 1.03967 1.26316 0.95136 0.78259 0.95753 1.20568 1.09460 1.00938 0.82237 1.23227 0.98264 0.93890 1.01350 1.23265 0.91304 0.99981 1.03594 1.84462 1.65982 1.38571 1.18698 0.93438 0.89871 0.93195 0.91380 1.00118 0.94380 0.97175 0.95427 0.90224 0.87755 0.91058 0.92599 0.73952 0.74962 0.83051 0.88009 0.84693 0.84796 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.30 71.98 0.67 -2.76 16 2 C -0.10 -3.40 3.09 -9.40 -0.03 -3.43 16 3 H 0.07 2.47 8.05 -2.39 -0.02 2.45 16 4 C 0.16 7.78 5.36 86.86 0.47 8.25 16 5 N -0.63 -32.99 3.39 -691.95 -2.35 -35.34 16 6 C -0.24 -13.82 10.27 84.04 0.86 -12.96 16 7 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 8 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 9 N -0.95 -57.15 10.09 21.65 0.22 -56.93 16 10 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 C 0.13 5.39 6.25 86.73 0.54 5.93 16 15 C -0.08 -2.39 2.38 -9.60 -0.02 -2.42 16 16 H 0.08 2.34 8.02 -2.39 -0.02 2.32 16 17 C -0.10 -2.03 4.74 30.59 0.14 -1.88 16 18 C 0.13 2.76 5.56 86.38 0.48 3.24 16 19 N -0.69 -12.51 5.54 -467.03 -2.59 -15.10 16 20 C 0.60 15.31 7.79 86.46 0.67 15.98 16 21 O -0.57 -20.41 17.11 -0.61 -0.01 -20.42 16 22 C -0.13 -2.93 7.22 24.05 0.17 -2.76 16 23 C 0.05 0.83 11.37 83.97 0.95 1.79 16 24 N -0.50 -9.45 10.79 -302.88 -3.27 -12.71 16 25 C 0.25 4.79 7.87 88.29 0.69 5.49 16 26 C -0.11 -1.28 6.33 -11.54 -0.07 -1.35 16 27 C -0.13 -0.91 10.13 30.59 0.31 -0.60 16 28 C -0.14 -1.08 10.23 30.59 0.31 -0.77 16 29 O -0.19 -4.79 10.79 -3.46 -0.04 -4.82 16 30 H 0.05 1.31 8.11 -2.39 -0.02 1.30 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 34 H -0.02 -1.03 8.04 -2.39 -0.02 -1.05 16 35 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 36 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.03 1.10 7.70 -2.39 -0.02 1.08 16 38 H 0.08 1.57 7.95 -2.38 -0.02 1.55 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.51 7.69 -2.39 -0.02 1.49 16 42 H 0.42 4.21 7.38 -92.71 -0.68 3.52 16 43 H 0.23 1.55 7.43 -2.91 -0.02 1.53 16 44 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.10 0.98 7.87 -2.39 -0.02 0.96 16 46 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -80.81 395.49 0.90 -79.91 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.28 Total: 8.53 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 6.63 Total: 8.28 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -7.99 Total: -120.09 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.05 Total: -25.25 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -80.81 0.90 -79.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103099015.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.424 kcal (2) G-P(sol) polarization free energy of solvation -80.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds