Wall clock time and date at job start Tue Mar 31 2020 17:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.64172 * 2 1 4 4 C 1.54331 * 110.87520 * 236.75119 * 2 1 3 5 5 N 1.47021 * 107.27003 * 219.37366 * 4 2 1 6 6 C 1.36938 * 125.64484 * 178.98978 * 5 4 2 7 7 H 1.08003 * 119.99366 * 179.97438 * 6 5 4 8 8 C 1.38806 * 120.00036 * 359.97438 * 6 5 4 9 9 N 1.31615 * 120.00034 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99989 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47278 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47346 * 119.99401 * 10 8 6 13 13 H 1.48502 * 109.47206 * 239.99440 * 10 8 6 14 14 C 1.47474 * 108.72323 * 358.97337 * 5 4 2 15 15 C 1.54908 * 104.81235 * 24.07011 * 14 5 4 16 16 H 1.09004 * 111.00396 * 81.13589 * 15 14 5 17 17 C 1.52995 * 111.00387 * 204.94907 * 15 14 5 18 18 C 1.52997 * 109.47168 * 290.41582 * 17 15 14 19 19 N 1.46500 * 109.47165 * 179.97438 * 18 17 15 20 20 C 1.34778 * 119.99803 * 180.02562 * 19 18 17 21 21 O 1.21469 * 120.00427 * 0.02562 * 20 19 18 22 22 C 1.48460 * 119.99716 * 179.97438 * 20 19 18 23 23 C 1.41146 * 120.54082 * 0.02562 * 22 20 19 24 24 C 1.35269 * 119.87345 * 180.02562 * 23 22 20 25 25 N 1.35699 * 120.99684 * 0.27596 * 24 23 22 26 26 C 1.46501 * 119.44057 * 179.70191 * 25 24 23 27 27 C 1.34604 * 121.11704 * 359.43099 * 25 24 23 28 28 O 1.22003 * 119.95938 * 180.28275 * 27 25 24 29 29 C 1.38291 * 120.53882 * 180.02562 * 22 20 19 30 30 H 1.08999 * 109.47358 * 296.86615 * 1 2 3 31 31 H 1.09006 * 109.46766 * 56.85995 * 1 2 3 32 32 H 1.08998 * 109.47150 * 176.85654 * 1 2 3 33 33 H 1.08998 * 109.87415 * 338.79093 * 4 2 1 34 34 H 1.08998 * 109.87869 * 99.95619 * 4 2 1 35 35 H 0.97002 * 120.00021 * 180.02562 * 9 8 6 36 36 H 1.08995 * 110.34834 * 265.24873 * 14 5 4 37 37 H 1.08998 * 110.40166 * 142.91824 * 14 5 4 38 38 H 1.08998 * 109.46921 * 170.41614 * 17 15 14 39 39 H 1.09001 * 109.47175 * 50.42189 * 17 15 14 40 40 H 1.09006 * 109.47016 * 60.00464 * 18 17 15 41 41 H 1.09001 * 109.47568 * 300.00366 * 18 17 15 42 42 H 0.96995 * 120.00064 * 0.02562 * 19 18 17 43 43 H 1.08005 * 120.06539 * 359.97438 * 23 22 20 44 44 H 1.08002 * 119.49944 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.47183 * 89.99570 * 26 25 24 46 46 H 1.09003 * 109.46977 * 209.99796 * 26 25 24 47 47 H 1.09008 * 109.46631 * 329.99556 * 26 25 24 48 48 H 1.08006 * 120.49380 * 359.96135 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2495 -1.5470 -0.7353 6 6 4.0127 -2.3916 -1.4964 7 1 4.8556 -2.9028 -1.0553 8 6 3.7029 -2.5908 -2.8347 9 7 2.6753 -1.9682 -3.3721 10 14 4.7444 -3.7424 -3.8732 11 1 5.8324 -4.3135 -3.0392 12 1 3.8942 -4.8409 -4.3983 13 1 5.3351 -2.9880 -5.0078 14 6 3.4651 -1.2455 0.6921 15 6 2.0789 -0.7933 1.2152 16 1 1.4465 -1.6525 1.4388 17 6 2.2236 0.1112 2.4406 18 6 2.7230 -0.7145 3.6279 19 7 2.8621 0.1518 4.8011 20 6 3.2914 -0.3619 5.9709 21 8 3.5635 -1.5429 6.0523 22 6 3.4329 0.5161 7.1597 23 6 3.1205 1.8901 7.0778 24 6 3.2549 2.6778 8.1692 25 7 3.6929 2.1691 9.3486 26 6 3.8320 3.0546 10.5074 27 6 3.9965 0.8637 9.4731 28 8 4.3836 0.4278 10.5448 29 6 3.8730 0.0010 8.3653 30 1 -0.3634 0.4644 0.9167 31 1 -0.3633 0.5619 -0.8606 32 1 -0.3633 -1.0261 -0.0564 33 1 1.3190 -1.4773 -1.5769 34 1 2.3776 -0.1015 -1.9963 35 1 2.4586 -2.1077 -4.3072 36 1 4.1933 -0.4422 0.8039 37 1 3.7984 -2.1373 1.2227 38 1 1.2561 0.5500 2.6845 39 1 2.9383 0.9052 2.2239 40 1 3.6905 -1.1533 3.3840 41 1 2.0083 -1.5084 3.8447 42 1 2.6452 1.0949 4.7361 43 1 2.7756 2.3119 6.1453 44 1 3.0145 3.7284 8.0997 45 1 2.8967 3.0703 11.0669 46 1 4.6335 2.6894 11.1495 47 1 4.0693 4.0628 10.1678 48 1 4.1186 -1.0468 8.4566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103154792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:31 Heat of formation + Delta-G solvation = -17.115944 kcal Electronic energy + Delta-G solvation = -27760.111123 eV Core-core repulsion = 23816.059759 eV Total energy + Delta-G solvation = -3944.051364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80153 -39.86371 -38.19031 -37.32390 -35.42060 -34.94508 -33.25049 -31.27381 -30.65469 -30.39824 -28.55818 -26.91031 -25.72882 -24.83786 -23.93381 -23.60423 -22.04136 -20.88227 -19.80529 -19.24769 -18.45369 -17.90261 -17.29883 -16.81824 -16.56495 -16.10456 -15.84196 -15.69895 -15.00140 -14.62125 -14.38491 -14.24345 -13.95766 -13.73758 -13.59287 -13.51944 -13.13141 -13.06268 -12.59982 -12.39455 -12.36223 -12.18358 -11.92724 -11.72185 -11.41280 -11.23149 -11.09402 -10.79871 -10.75752 -10.71694 -10.51258 -10.18780 -10.02158 -9.88499 -9.84467 -9.65159 -9.49757 -9.22915 -8.57718 -8.48048 -6.79057 -5.68334 -3.01254 0.02692 1.18214 2.11218 2.54891 2.82234 3.33127 3.41705 3.47648 3.49876 3.97326 4.11931 4.24831 4.52561 4.56947 4.60047 4.69150 4.79393 4.88907 5.06646 5.06894 5.23868 5.27123 5.46528 5.47815 5.51003 5.59706 5.66491 5.70805 5.72813 5.88707 5.90400 5.96341 6.07072 6.19444 6.22816 6.27585 6.34761 6.50891 6.50986 6.63637 6.66510 6.79591 7.01245 7.22947 7.50294 7.60793 7.67144 7.87009 7.92126 8.29586 9.25904 9.86253 10.52445 11.43378 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023010 B = 0.001920 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.570407 B =14579.224815 C =15352.014448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.063 0.937 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.225 4.225 7 H 0.078 0.922 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.139 3.861 15 C -0.096 4.096 16 H 0.077 0.923 17 C -0.116 4.116 18 C 0.116 3.884 19 N -0.717 5.717 20 C 0.549 3.451 21 O -0.522 6.522 22 C -0.032 4.032 23 C -0.214 4.214 24 C 0.132 3.868 25 N -0.497 5.497 26 C 0.057 3.943 27 C 0.512 3.488 28 O -0.542 6.542 29 C -0.169 4.169 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.251 0.749 36 H 0.017 0.983 37 H 0.038 0.962 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.400 0.600 43 H 0.150 0.850 44 H 0.169 0.831 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 16.206 23.223 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.082 0.918 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.353 4.353 7 H 0.096 0.904 8 C -0.207 4.207 9 N -0.571 5.571 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.013 3.987 15 C -0.116 4.116 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.007 4.007 19 N -0.369 5.369 20 C 0.335 3.665 21 O -0.398 6.398 22 C -0.039 4.039 23 C -0.238 4.238 24 C 0.005 3.995 25 N -0.209 5.209 26 C -0.084 4.084 27 C 0.313 3.687 28 O -0.423 6.423 29 C -0.193 4.193 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.235 0.765 43 H 0.167 0.833 44 H 0.186 0.814 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.106 0.894 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.200 14.988 23.755 28.270 hybrid contribution 0.338 0.012 -0.860 0.924 sum -2.863 15.000 22.895 27.521 Atomic orbital electron populations 1.21676 0.95568 1.01576 1.00240 1.22483 0.94927 0.98922 0.97024 0.91806 1.21204 0.89069 0.93088 0.90778 1.44494 1.32391 1.51671 1.04771 1.19123 1.07317 1.17656 0.91252 0.90432 1.24797 0.98486 1.00442 0.96929 1.69976 1.28817 1.45804 1.12458 0.86055 0.79342 0.80133 0.80329 1.20505 1.21797 1.21831 1.21631 0.93288 0.97114 0.86716 1.22332 0.98939 0.97600 0.92682 0.90481 1.21747 1.01180 0.98622 0.93881 1.21591 1.02558 0.93194 0.83333 1.45983 1.67242 1.13335 1.10334 1.18296 0.77984 0.87376 0.82894 1.90816 1.48774 1.15927 1.84281 1.20523 0.95516 0.93736 0.94124 1.20658 1.10817 0.92760 0.99528 1.21843 0.93500 0.99853 0.84274 1.45413 1.53362 1.10702 1.11406 1.22217 1.04654 0.93539 0.88020 1.17100 0.80396 0.81016 0.90190 1.90977 1.48456 1.74281 1.28635 1.22768 1.03599 1.02056 0.90830 0.93836 0.93009 0.92752 0.93460 0.94258 0.93898 0.96521 0.94416 0.91543 0.91241 0.90567 0.91055 0.76464 0.83291 0.81405 0.90365 0.88622 0.89401 0.81850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.17 37.16 0.34 -1.63 16 2 C -0.11 -1.98 3.01 -88.78 -0.27 -2.25 16 3 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 4 C 0.18 4.36 4.97 -3.06 -0.02 4.35 16 5 N -0.61 -15.46 3.40 -170.04 -0.58 -16.04 16 6 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 7 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 9 N -0.92 -27.21 10.31 55.49 0.57 -26.64 16 10 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.14 2.79 6.04 -2.50 -0.02 2.77 16 15 C -0.10 -1.52 2.48 -88.47 -0.22 -1.74 16 16 H 0.08 1.27 8.05 -51.93 -0.42 0.86 16 17 C -0.12 -1.31 4.84 -26.74 -0.13 -1.44 16 18 C 0.12 1.35 5.55 -4.04 -0.02 1.33 16 19 N -0.72 -6.75 5.51 -61.05 -0.34 -7.08 16 20 C 0.55 6.41 7.80 -12.05 -0.09 6.32 16 21 O -0.52 -8.35 16.39 5.39 0.09 -8.26 16 22 C -0.03 -0.30 5.91 -104.56 -0.62 -0.91 16 23 C -0.21 -1.12 9.51 -39.54 -0.38 -1.49 16 24 C 0.13 0.51 10.25 -16.90 -0.17 0.33 16 25 N -0.50 -3.25 2.98 -127.13 -0.38 -3.63 16 26 C 0.06 0.21 10.34 59.85 0.62 0.83 16 27 C 0.51 5.51 7.42 -15.31 -0.11 5.39 16 28 O -0.54 -7.69 16.62 4.92 0.08 -7.61 16 29 C -0.17 -1.84 9.61 -38.53 -0.37 -2.21 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.05 1.25 7.02 -51.93 -0.36 0.89 16 34 H 0.04 1.05 7.51 -51.93 -0.39 0.66 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.02 0.34 7.96 -51.93 -0.41 -0.08 16 37 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.75 8.04 -51.93 -0.42 0.34 16 40 H 0.08 1.03 7.60 -51.93 -0.39 0.64 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.40 2.39 6.58 -40.82 -0.27 2.12 16 43 H 0.15 0.35 6.50 -52.48 -0.34 0.01 16 44 H 0.17 -0.08 8.02 -52.49 -0.42 -0.50 16 45 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.10 0.50 7.38 -51.93 -0.38 0.12 16 47 H 0.09 0.04 8.00 -51.92 -0.42 -0.38 16 48 H 0.16 1.96 7.69 -52.48 -0.40 1.56 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -37.12 390.13 -8.95 -46.07 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.55 Total: -2.77 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.70 Total: 2.75 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.72 Total: -53.39 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.17 Total: -15.87 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.12 -8.95 -46.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103154792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.950 kcal (2) G-P(sol) polarization free energy of solvation -37.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds