Wall clock time and date at job start Tue Mar 31 2020 17:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.64172 * 2 1 4 4 C 1.54331 * 110.87520 * 236.75119 * 2 1 3 5 5 N 1.47021 * 107.27003 * 219.37366 * 4 2 1 6 6 C 1.36938 * 125.64484 * 178.98978 * 5 4 2 7 7 H 1.08003 * 119.99366 * 179.97438 * 6 5 4 8 8 C 1.38806 * 120.00036 * 359.97438 * 6 5 4 9 9 N 1.31615 * 120.00034 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99989 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47278 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47346 * 119.99401 * 10 8 6 13 13 H 1.48502 * 109.47206 * 239.99440 * 10 8 6 14 14 C 1.47474 * 108.72323 * 358.97337 * 5 4 2 15 15 C 1.54908 * 104.81235 * 24.07011 * 14 5 4 16 16 H 1.09004 * 111.00396 * 81.13589 * 15 14 5 17 17 C 1.52995 * 111.00387 * 204.94907 * 15 14 5 18 18 C 1.52997 * 109.47168 * 290.41582 * 17 15 14 19 19 N 1.46500 * 109.47165 * 179.97438 * 18 17 15 20 20 C 1.34778 * 119.99803 * 180.02562 * 19 18 17 21 21 O 1.21469 * 120.00427 * 0.02562 * 20 19 18 22 22 C 1.48460 * 119.99716 * 179.97438 * 20 19 18 23 23 C 1.41146 * 120.54082 * 0.02562 * 22 20 19 24 24 C 1.35269 * 119.87345 * 180.02562 * 23 22 20 25 25 N 1.35699 * 120.99684 * 0.27596 * 24 23 22 26 26 C 1.46501 * 119.44057 * 179.70191 * 25 24 23 27 27 C 1.34604 * 121.11704 * 359.43099 * 25 24 23 28 28 O 1.22003 * 119.95938 * 180.28275 * 27 25 24 29 29 C 1.38291 * 120.53882 * 180.02562 * 22 20 19 30 30 H 1.08999 * 109.47358 * 296.86615 * 1 2 3 31 31 H 1.09006 * 109.46766 * 56.85995 * 1 2 3 32 32 H 1.08998 * 109.47150 * 176.85654 * 1 2 3 33 33 H 1.08998 * 109.87415 * 338.79093 * 4 2 1 34 34 H 1.08998 * 109.87869 * 99.95619 * 4 2 1 35 35 H 0.97002 * 120.00021 * 180.02562 * 9 8 6 36 36 H 1.08995 * 110.34834 * 265.24873 * 14 5 4 37 37 H 1.08998 * 110.40166 * 142.91824 * 14 5 4 38 38 H 1.08998 * 109.46921 * 170.41614 * 17 15 14 39 39 H 1.09001 * 109.47175 * 50.42189 * 17 15 14 40 40 H 1.09006 * 109.47016 * 60.00464 * 18 17 15 41 41 H 1.09001 * 109.47568 * 300.00366 * 18 17 15 42 42 H 0.96995 * 120.00064 * 0.02562 * 19 18 17 43 43 H 1.08005 * 120.06539 * 359.97438 * 23 22 20 44 44 H 1.08002 * 119.49944 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.47183 * 89.99570 * 26 25 24 46 46 H 1.09003 * 109.46977 * 209.99796 * 26 25 24 47 47 H 1.09008 * 109.46631 * 329.99556 * 26 25 24 48 48 H 1.08006 * 120.49380 * 359.96135 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2495 -1.5470 -0.7353 6 6 4.0127 -2.3916 -1.4964 7 1 4.8556 -2.9028 -1.0553 8 6 3.7029 -2.5908 -2.8347 9 7 2.6753 -1.9682 -3.3721 10 14 4.7444 -3.7424 -3.8732 11 1 5.8324 -4.3135 -3.0392 12 1 3.8942 -4.8409 -4.3983 13 1 5.3351 -2.9880 -5.0078 14 6 3.4651 -1.2455 0.6921 15 6 2.0789 -0.7933 1.2152 16 1 1.4465 -1.6525 1.4388 17 6 2.2236 0.1112 2.4406 18 6 2.7230 -0.7145 3.6279 19 7 2.8621 0.1518 4.8011 20 6 3.2914 -0.3619 5.9709 21 8 3.5635 -1.5429 6.0523 22 6 3.4329 0.5161 7.1597 23 6 3.1205 1.8901 7.0778 24 6 3.2549 2.6778 8.1692 25 7 3.6929 2.1691 9.3486 26 6 3.8320 3.0546 10.5074 27 6 3.9965 0.8637 9.4731 28 8 4.3836 0.4278 10.5448 29 6 3.8730 0.0010 8.3653 30 1 -0.3634 0.4644 0.9167 31 1 -0.3633 0.5619 -0.8606 32 1 -0.3633 -1.0261 -0.0564 33 1 1.3190 -1.4773 -1.5769 34 1 2.3776 -0.1015 -1.9963 35 1 2.4586 -2.1077 -4.3072 36 1 4.1933 -0.4422 0.8039 37 1 3.7984 -2.1373 1.2227 38 1 1.2561 0.5500 2.6845 39 1 2.9383 0.9052 2.2239 40 1 3.6905 -1.1533 3.3840 41 1 2.0083 -1.5084 3.8447 42 1 2.6452 1.0949 4.7361 43 1 2.7756 2.3119 6.1453 44 1 3.0145 3.7284 8.0997 45 1 2.8967 3.0703 11.0669 46 1 4.6335 2.6894 11.1495 47 1 4.0693 4.0628 10.1678 48 1 4.1186 -1.0468 8.4566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103154792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:30 Heat of formation + Delta-G solvation = -43.761632 kcal Electronic energy + Delta-G solvation = -27761.266566 eV Core-core repulsion = 23816.059759 eV Total energy + Delta-G solvation = -3945.206808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.43236 -40.80446 -39.69535 -38.05075 -36.56372 -35.58947 -34.98131 -32.52984 -32.44287 -30.96729 -29.29261 -28.22525 -27.38630 -25.92861 -24.90470 -24.39034 -23.37396 -21.80357 -21.33803 -20.65524 -19.15215 -18.85797 -18.51605 -17.90588 -17.17270 -17.02237 -16.76507 -16.75365 -16.50324 -15.96990 -15.61905 -15.23429 -15.12403 -14.98809 -14.41210 -14.25676 -14.13776 -14.10195 -13.82469 -13.47978 -13.40632 -13.31096 -12.92079 -12.89584 -12.78997 -12.74930 -12.66459 -12.35602 -12.17441 -11.88499 -11.79483 -11.65173 -11.37315 -11.22564 -11.14282 -11.13209 -10.90775 -10.69851 -10.15208 -9.07080 -8.86440 -7.84643 -5.19253 -0.65594 0.65042 1.43908 1.44635 1.55131 1.62110 1.70778 1.96001 2.48975 2.63852 3.32760 3.46340 3.67262 3.69439 3.73246 3.79907 4.00300 4.07198 4.08156 4.16874 4.30760 4.38958 4.44391 4.48237 4.56306 4.66483 4.70674 4.78378 4.80418 4.83785 4.86877 4.95609 5.05248 5.06232 5.12624 5.16767 5.22283 5.31735 5.37579 5.44687 5.47933 5.49252 5.59316 5.79128 5.87128 5.94619 6.22841 6.46233 6.82763 7.10556 7.12785 7.81102 8.44767 9.25355 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023010 B = 0.001920 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.570407 B =14579.224815 C =15352.014448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.084 0.916 4 C 0.189 3.811 5 N -0.632 5.632 6 C -0.241 4.241 7 H 0.077 0.923 8 C -0.069 4.069 9 N -0.950 5.950 10 Si 0.976 3.024 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.290 1.290 14 C 0.131 3.869 15 C -0.080 4.080 16 H 0.070 0.930 17 C -0.098 4.098 18 C 0.120 3.880 19 N -0.694 5.694 20 C 0.544 3.456 21 O -0.576 6.576 22 C -0.015 4.015 23 C -0.221 4.221 24 C 0.161 3.839 25 N -0.489 5.489 26 C 0.050 3.950 27 C 0.502 3.498 28 O -0.599 6.599 29 C -0.219 4.219 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.008 0.992 34 H -0.001 1.001 35 H 0.246 0.754 36 H 0.027 0.973 37 H 0.029 0.971 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.422 0.578 43 H 0.191 0.809 44 H 0.233 0.767 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.135 0.865 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 20.562 24.146 32.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.102 0.898 4 C 0.064 3.936 5 N -0.358 5.358 6 C -0.370 4.370 7 H 0.095 0.905 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.804 3.196 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.217 1.217 14 C 0.006 3.994 15 C -0.100 4.100 16 H 0.088 0.912 17 C -0.136 4.136 18 C -0.004 4.004 19 N -0.347 5.347 20 C 0.331 3.669 21 O -0.456 6.456 22 C -0.022 4.022 23 C -0.243 4.243 24 C 0.034 3.966 25 N -0.197 5.197 26 C -0.090 4.090 27 C 0.305 3.695 28 O -0.485 6.485 29 C -0.243 4.243 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.026 0.974 34 H 0.017 0.983 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.262 0.738 43 H 0.208 0.792 44 H 0.249 0.751 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.153 0.847 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.453 19.424 24.693 31.731 hybrid contribution 0.718 -1.249 -1.193 1.870 sum -3.735 18.176 23.500 29.943 Atomic orbital electron populations 1.21640 0.93197 1.01140 1.02485 1.22362 0.96735 0.98742 0.94088 0.89784 1.21020 0.87765 0.91944 0.92907 1.44858 1.32540 1.51442 1.06996 1.19483 1.07605 1.17934 0.91986 0.90499 1.25630 0.99950 1.02365 0.98203 1.70201 1.30280 1.47161 1.12266 0.85044 0.77970 0.78012 0.78537 1.19281 1.21901 1.21737 1.21875 0.96314 0.97139 0.84061 1.22207 0.95563 0.98131 0.94125 0.91207 1.21607 1.03711 0.97514 0.90802 1.21385 1.01094 0.93559 0.84333 1.45705 1.65944 1.14184 1.08825 1.18750 0.77170 0.86992 0.83984 1.90797 1.51120 1.18512 1.85182 1.20490 0.94383 0.95402 0.91933 1.21108 1.10779 0.90427 1.01959 1.22879 0.89430 1.02190 0.82095 1.45573 1.51201 1.09551 1.13405 1.22530 1.04635 0.94712 0.87153 1.17039 0.80645 0.82595 0.89231 1.90929 1.51715 1.75636 1.30270 1.22455 1.08068 1.01253 0.92536 0.89508 0.93030 0.94369 0.97370 0.98282 0.94487 0.95546 0.95215 0.87798 0.89558 0.93011 0.92048 0.73811 0.79204 0.75087 0.89135 0.90966 0.84686 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.17 71.98 0.66 -2.74 16 2 C -0.10 -3.27 3.01 -9.60 -0.03 -3.30 16 3 H 0.08 2.45 8.04 -2.39 -0.02 2.43 16 4 C 0.19 9.22 4.97 86.73 0.43 9.65 16 5 N -0.63 -32.99 3.40 -691.87 -2.35 -35.34 16 6 C -0.24 -13.93 10.28 84.03 0.86 -13.07 16 7 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 8 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 9 N -0.95 -58.19 10.31 21.65 0.22 -57.97 16 10 Si 0.98 47.08 29.55 68.60 2.03 49.10 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 14 C 0.13 5.22 6.04 86.85 0.52 5.75 16 15 C -0.08 -2.38 2.48 -9.40 -0.02 -2.41 16 16 H 0.07 2.20 8.05 -2.38 -0.02 2.18 16 17 C -0.10 -1.78 4.84 30.59 0.15 -1.63 16 18 C 0.12 2.52 5.55 86.38 0.48 3.00 16 19 N -0.69 -10.84 5.51 -465.38 -2.57 -13.41 16 20 C 0.54 12.30 7.80 86.97 0.68 12.98 16 21 O -0.58 -19.40 16.39 -3.62 -0.06 -19.46 16 22 C -0.01 -0.25 5.91 -19.83 -0.12 -0.37 16 23 C -0.22 -1.20 9.51 22.30 0.21 -0.99 16 24 C 0.16 0.29 10.25 83.41 0.86 1.15 16 25 N -0.49 -5.01 2.98 -674.31 -2.01 -7.02 16 26 C 0.05 0.20 10.34 127.77 1.32 1.52 16 27 C 0.50 11.19 7.42 84.93 0.63 11.82 16 28 O -0.60 -18.57 16.62 -5.33 -0.09 -18.66 16 29 C -0.22 -5.17 9.61 22.95 0.22 -4.95 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.04 1.14 8.07 -2.39 -0.02 1.12 16 33 H 0.01 0.45 7.02 -2.39 -0.02 0.43 16 34 H 0.00 -0.06 7.51 -2.39 -0.02 -0.08 16 35 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.03 1.02 7.96 -2.39 -0.02 1.00 16 37 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 40 H 0.05 1.37 7.60 -2.38 -0.02 1.35 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.42 2.65 6.58 -92.71 -0.61 2.04 16 43 H 0.19 -0.55 6.50 -2.91 -0.02 -0.57 16 44 H 0.23 -2.39 8.02 -2.91 -0.02 -2.41 16 45 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.07 0.70 7.38 -2.39 -0.02 0.68 16 47 H 0.13 -0.71 8.00 -2.38 -0.02 -0.72 16 48 H 0.13 3.76 7.69 -2.91 -0.02 3.74 16 Total: -1.00 -93.15 390.13 2.85 -90.30 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: 0.35 Total: -0.41 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 7.32 Total: 12.86 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -6.70 Total: -113.74 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.15 Total: -38.12 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -93.15 2.85 -90.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103154792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.541 kcal (2) G-P(sol) polarization free energy of solvation -93.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds