Wall clock time and date at job start Tue Mar 31 2020 17:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47028 * 60.00888 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47412 * 300.00497 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21493 * 120.00257 * 359.97438 * 20 19 18 22 22 C 1.48333 * 119.99782 * 179.97438 * 20 19 18 23 23 C 1.42272 * 126.93801 * 179.97438 * 22 20 19 24 24 C 1.35317 * 103.92248 * 180.02562 * 23 22 20 25 25 C 1.50699 * 126.66528 * 179.97438 * 24 23 22 26 26 C 1.53006 * 117.49626 * 188.74674 * 25 24 23 27 27 C 1.53000 * 117.49649 * 120.09131 * 25 24 23 28 28 O 1.34018 * 106.66739 * 0.02562 * 24 23 22 29 29 N 1.20900 * 111.84572 * 359.70889 * 28 24 23 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 39 39 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 40 40 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 41 41 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 42 42 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 43 43 H 1.08000 * 128.03898 * 359.97438 * 23 22 20 44 44 H 1.09000 * 115.54833 * 334.41382 * 25 24 23 45 45 H 1.09001 * 117.49787 * 0.02562 * 26 25 24 46 46 H 1.09004 * 117.49674 * 145.01833 * 26 25 24 47 47 H 1.09006 * 117.49310 * 214.97761 * 27 25 24 48 48 H 1.08991 * 117.49924 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.1187 -3.3418 -3.8830 12 1 5.2768 -1.7776 -5.5341 13 1 6.8595 -1.0330 -3.8549 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3956 -1.6310 6.0778 22 6 3.3164 0.4280 7.1879 23 6 3.6984 0.0238 8.4974 24 6 3.6768 1.1726 9.2121 25 6 4.0010 1.3283 10.6756 26 6 3.7133 2.6847 11.3225 27 6 5.1576 2.2582 11.0478 28 8 3.3099 2.1449 8.3659 29 7 3.1189 1.7215 7.2497 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9836 0.8519 2.2422 39 1 1.2757 0.5631 2.6523 40 1 1.9108 -1.5272 3.8253 41 1 3.6187 -1.2383 3.4154 42 1 2.6254 1.0460 4.7454 43 1 3.9470 -0.9693 8.8414 44 1 3.8543 0.4378 11.2869 45 1 3.2891 3.4642 10.6897 46 1 3.3777 2.6865 12.3596 47 1 5.7716 1.9797 11.9044 48 1 5.6841 2.7571 10.2343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103283819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:51 Heat of formation + Delta-G solvation = 67.056305 kcal Electronic energy + Delta-G solvation = -27549.661317 eV Core-core repulsion = 23609.259936 eV Total energy + Delta-G solvation = -3940.401381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.46341 -39.79833 -38.14528 -37.94752 -35.38504 -34.36935 -33.26159 -32.00007 -31.03621 -30.64463 -27.21606 -25.81422 -25.18287 -24.29175 -23.70581 -22.97191 -22.64351 -21.91696 -20.26136 -19.61743 -19.16437 -18.18689 -17.97487 -17.07582 -16.82868 -16.34653 -15.86544 -15.71112 -15.02901 -14.98468 -14.38091 -14.10778 -13.92435 -13.77262 -13.55981 -12.98208 -12.94173 -12.80945 -12.19762 -12.12264 -12.06241 -12.01078 -11.74595 -11.66711 -11.48119 -11.12047 -11.08426 -11.03026 -10.85401 -10.80141 -10.71879 -10.51521 -10.10197 -9.88283 -9.80936 -9.69327 -9.64464 -9.31452 -9.24160 -8.61046 -6.78222 -5.61264 -3.02634 0.73640 1.25735 2.42571 2.74381 2.92989 3.21661 3.42909 3.46829 3.48273 3.62746 3.84458 4.15508 4.29733 4.48118 4.52314 4.71597 4.84769 4.89662 5.01612 5.05791 5.08846 5.24165 5.28774 5.40888 5.47092 5.49344 5.49719 5.54216 5.57092 5.66779 5.76032 5.91827 5.97544 6.12309 6.22400 6.28130 6.29682 6.35662 6.58199 6.64194 6.71683 6.85458 7.04285 7.17769 7.58839 7.63107 7.67239 7.88241 7.90662 8.40898 9.26636 9.87598 10.53204 11.42358 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.001843 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.991443 B =15188.778766 C =15833.191136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.221 4.221 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.117 4.117 18 C 0.117 3.883 19 N -0.711 5.711 20 C 0.595 3.405 21 O -0.520 6.520 22 C -0.020 4.020 23 C -0.176 4.176 24 C -0.003 4.003 25 C -0.088 4.088 26 C -0.166 4.166 27 C -0.161 4.161 28 O 0.122 5.878 29 N -0.331 5.331 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.252 0.748 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.406 0.594 43 H 0.182 0.818 44 H 0.141 0.859 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 8.303 29.462 30.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.350 4.350 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.006 4.006 19 N -0.362 5.362 20 C 0.378 3.622 21 O -0.395 6.395 22 C -0.180 4.180 23 C -0.198 4.198 24 C -0.065 4.065 25 C -0.107 4.107 26 C -0.203 4.203 27 C -0.198 4.198 28 O 0.046 5.954 29 N -0.032 5.032 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.029 0.971 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.241 0.759 43 H 0.199 0.801 44 H 0.159 0.841 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.530 8.273 28.281 29.574 hybrid contribution 0.832 -0.622 -0.261 1.071 sum -1.698 7.651 28.020 29.095 Atomic orbital electron populations 1.21633 0.95752 1.01133 1.00572 1.22634 0.94379 0.99379 0.97065 0.91368 1.21965 0.84061 0.95854 0.94717 1.44491 1.10518 1.78940 0.99137 1.19045 0.90974 1.37714 0.87241 0.90621 1.24783 0.97279 1.02116 0.96609 1.69793 1.22410 1.53912 1.11049 0.86156 0.81246 0.78193 0.79936 1.21248 1.21581 1.21221 1.21378 0.93680 0.97209 0.86427 1.22149 0.98226 0.97593 0.93209 0.90862 1.21801 1.01658 0.98529 0.93505 1.21635 1.02656 0.93275 0.82989 1.45960 1.68335 1.12894 1.09032 1.16860 0.77754 0.86260 0.81306 1.90823 1.50006 1.14249 1.84391 1.23554 1.06275 0.90949 0.97187 1.22350 1.05722 1.00877 0.90840 1.23432 1.01827 0.87223 0.94056 1.20469 1.06365 0.97570 0.86329 1.23117 0.98843 0.95980 1.02315 1.23155 0.91388 1.01417 1.03870 1.84747 1.62166 1.35130 1.13343 1.74188 1.16633 1.12508 0.99856 0.93071 0.93872 0.92780 0.87755 0.97067 0.93756 0.96235 0.96009 0.91063 0.91438 0.90972 0.90495 0.75909 0.80053 0.84086 0.87655 0.87414 0.87303 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.30 37.16 0.35 -1.72 16 2 C -0.11 -2.14 3.09 -88.47 -0.27 -2.41 16 3 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 4 C 0.16 3.88 5.36 -2.53 -0.01 3.87 16 5 N -0.61 -15.82 3.39 -170.06 -0.58 -16.40 16 6 C -0.22 -6.31 10.27 -15.06 -0.15 -6.47 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 9 N -0.92 -27.25 10.09 55.49 0.56 -26.69 16 10 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.14 2.95 6.25 -3.06 -0.02 2.93 16 15 C -0.09 -1.57 2.38 -88.77 -0.21 -1.78 16 16 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 17 C -0.12 -1.56 4.74 -26.73 -0.13 -1.69 16 18 C 0.12 1.55 5.56 -4.04 -0.02 1.53 16 19 N -0.71 -8.79 5.55 -61.09 -0.34 -9.13 16 20 C 0.60 8.21 7.85 -12.11 -0.10 8.11 16 21 O -0.52 -8.68 16.95 5.37 0.09 -8.59 16 22 C -0.02 -0.24 7.19 -82.52 -0.59 -0.84 16 23 C -0.18 -1.66 10.92 -39.07 -0.43 -2.09 16 24 C 0.00 -0.02 6.93 -35.35 -0.24 -0.27 16 25 C -0.09 -0.40 6.26 -91.77 -0.57 -0.98 16 26 C -0.17 -0.58 10.18 -26.69 -0.27 -0.85 16 27 C -0.16 -0.58 10.24 -26.69 -0.27 -0.86 16 28 O 0.12 1.15 10.96 17.24 0.19 1.34 16 29 N -0.33 -3.72 11.84 33.30 0.39 -3.32 16 30 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.88 5.87 -51.93 -0.31 2.57 16 34 H 0.01 0.30 8.04 -51.93 -0.42 -0.12 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.02 0.46 7.70 -51.93 -0.40 0.06 16 38 H 0.07 0.97 7.95 -51.92 -0.41 0.56 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.14 7.69 -51.93 -0.40 0.74 16 42 H 0.41 4.33 8.23 -40.82 -0.34 4.00 16 43 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.11 0.42 8.01 -51.93 -0.42 0.01 16 46 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -33.16 396.82 -9.49 -42.65 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.72 Total: 0.66 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.05 Total: -3.96 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.04 Total: -55.53 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.28 Total: -7.25 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.16 -9.49 -42.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103283819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.711 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds