Wall clock time and date at job start Tue Mar 31 2020 17:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47028 * 60.00888 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47412 * 300.00497 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21493 * 120.00257 * 359.97438 * 20 19 18 22 22 C 1.48333 * 119.99782 * 179.97438 * 20 19 18 23 23 C 1.42272 * 126.93801 * 179.97438 * 22 20 19 24 24 C 1.35317 * 103.92248 * 180.02562 * 23 22 20 25 25 C 1.50699 * 126.66528 * 179.97438 * 24 23 22 26 26 C 1.53006 * 117.49626 * 188.74674 * 25 24 23 27 27 C 1.53000 * 117.49649 * 120.09131 * 25 24 23 28 28 O 1.34018 * 106.66739 * 0.02562 * 24 23 22 29 29 N 1.20900 * 111.84572 * 359.70889 * 28 24 23 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 39 39 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 40 40 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 41 41 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 42 42 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 43 43 H 1.08000 * 128.03898 * 359.97438 * 23 22 20 44 44 H 1.09000 * 115.54833 * 334.41382 * 25 24 23 45 45 H 1.09001 * 117.49787 * 0.02562 * 26 25 24 46 46 H 1.09004 * 117.49674 * 145.01833 * 26 25 24 47 47 H 1.09006 * 117.49310 * 214.97761 * 27 25 24 48 48 H 1.08991 * 117.49924 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.1187 -3.3418 -3.8830 12 1 5.2768 -1.7776 -5.5341 13 1 6.8595 -1.0330 -3.8549 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3956 -1.6310 6.0778 22 6 3.3164 0.4280 7.1879 23 6 3.6984 0.0238 8.4974 24 6 3.6768 1.1726 9.2121 25 6 4.0010 1.3283 10.6756 26 6 3.7133 2.6847 11.3225 27 6 5.1576 2.2582 11.0478 28 8 3.3099 2.1449 8.3659 29 7 3.1189 1.7215 7.2497 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9836 0.8519 2.2422 39 1 1.2757 0.5631 2.6523 40 1 1.9108 -1.5272 3.8253 41 1 3.6187 -1.2383 3.4154 42 1 2.6254 1.0460 4.7454 43 1 3.9470 -0.9693 8.8414 44 1 3.8543 0.4378 11.2869 45 1 3.2891 3.4642 10.6897 46 1 3.3777 2.6865 12.3596 47 1 5.7716 1.9797 11.9044 48 1 5.6841 2.7571 10.2343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103283819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:50 Heat of formation + Delta-G solvation = 46.900651 kcal Electronic energy + Delta-G solvation = -27550.535332 eV Core-core repulsion = 23609.259936 eV Total energy + Delta-G solvation = -3941.275396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.23938 -40.89905 -39.74069 -38.28026 -36.65012 -35.25646 -34.98540 -32.86261 -32.55185 -32.20223 -28.72353 -27.56022 -26.37621 -25.34158 -24.62678 -23.69886 -23.20976 -23.11934 -21.53499 -21.11541 -20.52153 -18.95113 -18.88290 -18.60525 -17.98319 -17.20301 -17.06551 -16.66006 -16.56220 -16.02312 -15.68120 -15.51129 -15.06647 -14.93588 -14.60342 -14.52925 -14.22046 -13.74551 -13.54971 -13.40504 -13.36427 -12.92727 -12.79830 -12.74046 -12.73472 -12.45482 -12.39164 -12.26403 -12.18266 -11.99899 -11.82397 -11.65406 -11.65183 -11.42375 -11.35812 -11.28822 -10.99368 -10.74332 -10.32886 -10.21890 -8.88316 -7.77947 -5.22569 -0.07691 0.53077 1.43788 1.47257 1.53728 1.68399 1.88862 1.93637 2.48228 2.76909 2.91891 3.29171 3.30857 3.64533 3.71218 3.73443 3.86158 3.91261 3.98643 4.02804 4.03934 4.22129 4.28059 4.28983 4.46017 4.48319 4.60293 4.66000 4.76402 4.80550 4.81154 4.83852 4.95359 4.99033 5.02346 5.07464 5.14245 5.14831 5.19588 5.27126 5.27344 5.39213 5.43891 5.52730 5.75236 5.84715 6.18453 6.31658 6.80502 6.93167 7.10804 7.78747 8.42839 9.23077 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.001843 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.991443 B =15188.778766 C =15833.191136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.070 0.930 4 C 0.160 3.840 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.076 0.924 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.980 3.020 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.133 3.867 15 C -0.078 4.078 16 H 0.081 0.919 17 C -0.101 4.101 18 C 0.123 3.877 19 N -0.701 5.701 20 C 0.594 3.406 21 O -0.556 6.556 22 C -0.041 4.041 23 C -0.190 4.190 24 C 0.015 3.985 25 C -0.100 4.100 26 C -0.160 4.160 27 C -0.158 4.158 28 O 0.125 5.875 29 N -0.342 5.342 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.069 0.931 34 H -0.016 1.016 35 H 0.247 0.753 36 H 0.014 0.986 37 H 0.024 0.976 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.416 0.584 43 H 0.193 0.807 44 H 0.163 0.837 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 9.462 32.199 33.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.121 4.121 3 H 0.088 0.912 4 C 0.035 3.965 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.094 0.906 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.808 3.192 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.008 3.992 15 C -0.097 4.097 16 H 0.099 0.901 17 C -0.139 4.139 18 C 0.000 4.000 19 N -0.353 5.353 20 C 0.379 3.621 21 O -0.434 6.434 22 C -0.199 4.199 23 C -0.213 4.213 24 C -0.048 4.048 25 C -0.118 4.118 26 C -0.197 4.197 27 C -0.195 4.195 28 O 0.048 5.952 29 N -0.043 5.043 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.002 0.998 35 H 0.057 0.943 36 H 0.032 0.968 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.253 0.747 43 H 0.210 0.790 44 H 0.181 0.819 45 H 0.116 0.884 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.724 9.462 31.032 32.557 hybrid contribution 0.927 -0.956 -1.039 1.690 sum -1.796 8.505 29.993 31.227 Atomic orbital electron populations 1.21593 0.92922 1.01745 1.02162 1.22478 0.96578 0.98403 0.94654 0.91172 1.21779 0.83567 0.94834 0.96290 1.44837 1.10545 1.78972 1.01138 1.19415 0.91866 1.37696 0.88191 0.90591 1.25643 0.99849 1.02477 0.98057 1.70061 1.24103 1.54715 1.10812 0.85125 0.78407 0.78084 0.77555 1.20626 1.21651 1.20276 1.21579 0.96549 0.97077 0.84008 1.22043 0.95398 0.98229 0.94035 0.90099 1.21644 1.03320 0.97558 0.91414 1.21469 1.01768 0.93406 0.83357 1.45844 1.67699 1.13281 1.08434 1.17109 0.77013 0.86047 0.81979 1.90796 1.51721 1.15784 1.85057 1.23435 1.07892 0.91256 0.97335 1.22560 1.06493 1.02035 0.90164 1.23973 0.99690 0.86108 0.95044 1.20758 1.07539 0.99177 0.84366 1.23225 0.98605 0.94733 1.03125 1.23248 0.91553 1.00567 1.04127 1.84718 1.61749 1.35508 1.13178 1.74173 1.17149 1.12183 1.00764 0.93167 0.90252 0.93032 0.91326 0.99845 0.94329 0.96846 0.95778 0.90964 0.88469 0.90789 0.92350 0.74735 0.78982 0.81936 0.88363 0.85424 0.85394 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.30 71.98 0.67 -2.99 16 2 C -0.10 -3.68 3.09 -9.40 -0.03 -3.71 16 3 H 0.07 2.53 8.05 -2.39 -0.02 2.51 16 4 C 0.16 8.07 5.36 86.86 0.47 8.54 16 5 N -0.63 -33.77 3.39 -691.95 -2.35 -36.12 16 6 C -0.24 -14.20 10.27 84.04 0.86 -13.33 16 7 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 8 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 9 N -0.95 -57.80 10.09 21.65 0.22 -57.59 16 10 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.13 5.68 6.25 86.73 0.54 6.22 16 15 C -0.08 -2.54 2.38 -9.60 -0.02 -2.56 16 16 H 0.08 2.56 8.02 -2.39 -0.02 2.54 16 17 C -0.10 -2.46 4.74 30.59 0.14 -2.32 16 18 C 0.12 3.11 5.56 86.38 0.48 3.59 16 19 N -0.70 -16.52 5.55 -465.50 -2.59 -19.10 16 20 C 0.59 16.19 7.85 86.93 0.68 16.87 16 21 O -0.56 -18.70 16.95 -3.69 -0.06 -18.76 16 22 C -0.04 -0.95 7.19 42.96 0.31 -0.64 16 23 C -0.19 -3.42 10.92 22.60 0.25 -3.17 16 24 C 0.01 0.21 6.93 25.01 0.17 0.38 16 25 C -0.10 -0.65 6.26 -11.54 -0.07 -0.73 16 26 C -0.16 -0.69 10.18 30.62 0.31 -0.38 16 27 C -0.16 -0.75 10.24 30.62 0.31 -0.44 16 28 O 0.13 2.21 10.96 71.87 0.79 3.00 16 29 N -0.34 -7.37 11.84 -49.51 -0.59 -7.95 16 30 H 0.05 1.46 8.11 -2.39 -0.02 1.44 16 31 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 3.95 5.87 -2.39 -0.01 3.94 16 34 H -0.02 -0.90 8.04 -2.39 -0.02 -0.92 16 35 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.02 1.02 7.70 -2.39 -0.02 1.00 16 38 H 0.07 1.80 7.95 -2.38 -0.02 1.78 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.71 7.69 -2.39 -0.02 1.69 16 42 H 0.42 8.15 8.23 -92.71 -0.76 7.39 16 43 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.16 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.10 0.59 8.01 -2.39 -0.02 0.57 16 46 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.13 0.14 8.14 -2.38 -0.02 0.12 16 48 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -74.84 396.82 3.19 -71.65 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.20 Total: 14.02 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.54 Total: 1.82 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -5.30 Total: -120.76 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.73 Total: -15.76 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -74.84 3.19 -71.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103283819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.549 kcal (2) G-P(sol) polarization free energy of solvation -74.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds