Wall clock time and date at job start Tue Mar 31 2020 17:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35749 * 116.99594 * 2 1 4 4 C 1.39210 * 120.81641 * 359.97438 * 3 2 1 5 5 C 1.38313 * 119.28733 * 179.97438 * 4 3 2 6 6 N 1.31607 * 120.97015 * 0.02562 * 5 4 3 7 7 C 1.32798 * 121.78655 * 0.02562 * 6 5 4 8 8 C 1.48182 * 119.70295 * 180.02562 * 7 6 5 9 9 O 1.21517 * 120.00009 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99710 * 359.97438 * 8 7 6 11 11 C 1.46508 * 119.99579 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46707 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47125 * 179.97438 * 12 11 10 14 14 H 1.09000 * 110.63496 * 51.85936 * 13 12 11 15 15 C 1.54335 * 111.00070 * 288.78390 * 13 12 11 16 16 N 1.47022 * 107.26195 * 219.59791 * 15 13 12 17 17 C 1.36935 * 125.64427 * 178.84992 * 16 15 13 18 18 H 1.08000 * 120.00518 * 359.44761 * 17 16 15 19 19 C 1.38817 * 119.99990 * 179.71412 * 17 16 15 20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47361 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46860 * 120.00310 * 21 19 17 24 24 H 1.48500 * 109.47264 * 240.00123 * 21 19 17 25 25 C 1.47426 * 108.70625 * 358.58545 * 16 15 13 26 26 C 1.54912 * 104.82994 * 24.35934 * 25 16 15 27 27 H 1.08995 * 111.00742 * 81.05954 * 26 25 16 28 28 C 1.52998 * 111.00086 * 204.87731 * 26 25 16 29 29 C 1.39110 * 120.59761 * 0.26979 * 7 6 5 30 30 H 1.09001 * 109.47135 * 300.00401 * 1 2 3 31 31 H 1.09006 * 109.47043 * 60.00249 * 1 2 3 32 32 H 1.09006 * 109.46912 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.35796 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.51322 * 179.97438 * 5 4 3 35 35 H 0.96996 * 120.00291 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.46669 * 60.00382 * 11 10 8 37 37 H 1.08993 * 109.46871 * 299.99995 * 11 10 8 38 38 H 1.09009 * 109.47210 * 60.00549 * 12 11 10 39 39 H 1.09003 * 109.47538 * 300.00244 * 12 11 10 40 40 H 1.09007 * 109.99076 * 100.12594 * 15 13 12 41 41 H 1.09002 * 109.78210 * 338.95588 * 15 13 12 42 42 H 0.96996 * 119.99743 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.36404 * 143.19245 * 25 16 15 44 44 H 1.08995 * 110.36566 * 265.51629 * 25 16 15 45 45 H 1.08996 * 109.47303 * 58.54471 * 28 26 25 46 46 H 1.09006 * 109.46537 * 178.54319 * 28 26 25 47 47 H 1.08996 * 109.47165 * 298.54472 * 28 26 25 48 48 H 1.08001 * 120.50489 * 179.70447 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3037 2.3877 -0.0005 5 6 1.9642 3.6030 0.0000 6 7 3.2791 3.6591 0.0005 7 6 4.0261 2.5612 0.0000 8 6 5.5033 2.6782 0.0012 9 8 6.1921 1.6771 0.0013 10 7 6.0829 3.8950 0.0023 11 6 7.5434 4.0106 0.0041 12 6 7.9378 5.4889 0.0043 13 6 9.4631 5.6097 0.0068 14 1 9.8971 5.0119 -0.7946 15 6 10.0489 5.1913 1.3720 16 7 11.1446 6.1218 1.6802 17 6 11.9094 6.1057 2.8160 18 1 11.7222 5.3687 3.5828 19 6 12.9220 7.0403 2.9841 20 7 13.1466 7.9422 2.0522 21 14 13.9649 7.0188 4.5337 22 1 13.5138 5.9150 5.4188 23 1 15.3892 6.8095 4.1690 24 1 13.8214 8.3144 5.2451 25 6 11.2877 7.0710 0.5613 26 6 9.8963 7.0943 -0.1193 27 1 9.2096 7.7486 0.4176 28 6 10.0108 7.5102 -1.5872 29 6 3.4345 1.3022 -0.0067 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 0.2243 2.3532 -0.0005 34 1 1.3925 4.5192 -0.0008 35 1 5.5331 4.6941 0.0027 36 1 7.9471 3.5274 -0.8857 37 1 7.9450 3.5268 0.8943 38 1 7.5340 5.9725 0.8939 39 1 7.5361 5.9724 -0.8862 40 1 10.4323 4.1724 1.3164 41 1 9.2784 5.2583 2.1401 42 1 13.8539 8.5954 2.1699 43 1 11.5436 8.0624 0.9353 44 1 12.0466 6.7210 -0.1384 45 1 10.6680 6.8163 -2.1113 46 1 9.0230 7.4932 -2.0477 47 1 10.4230 8.5174 -1.6484 48 1 4.0435 0.4103 -0.0119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103302249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:52 Heat of formation + Delta-G solvation = -19.493255 kcal Electronic energy + Delta-G solvation = -27617.857926 eV Core-core repulsion = 23673.703474 eV Total energy + Delta-G solvation = -3944.154452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23903 -39.71525 -38.48096 -38.01759 -35.27930 -33.25004 -32.09099 -32.05104 -30.87521 -30.58639 -28.22736 -26.98973 -25.68937 -24.73273 -23.82966 -23.59545 -21.94923 -20.95452 -19.72836 -19.28397 -18.84199 -17.74468 -16.81134 -16.66082 -16.46407 -16.14402 -15.86890 -15.68658 -15.11656 -14.92837 -14.47330 -14.33220 -14.06402 -13.99657 -13.62493 -13.37100 -12.95704 -12.91314 -12.75262 -12.18052 -12.02469 -11.95801 -11.89484 -11.59788 -11.45320 -11.07526 -10.97295 -10.80928 -10.70957 -10.51578 -10.07223 -9.98357 -9.81950 -9.75737 -9.73408 -9.66066 -9.41593 -9.26940 -9.06122 -8.59356 -6.75287 -5.59250 -3.00297 0.22905 0.81756 2.43098 2.51619 3.07202 3.43412 3.49041 3.51540 3.52249 3.82800 4.08700 4.31841 4.50811 4.53880 4.54301 4.63334 4.80347 4.87797 4.98838 5.14739 5.16695 5.30564 5.35744 5.51228 5.52060 5.59407 5.61598 5.72790 5.81563 5.91185 6.00025 6.04337 6.20368 6.30243 6.32785 6.38536 6.43499 6.61353 6.62322 6.68006 6.76078 6.89801 7.09023 7.23441 7.53134 7.62096 7.70684 7.93299 8.06486 8.43343 9.29082 9.90091 10.55763 11.44521 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.001898 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.513065 B =14747.022462 C =15408.078365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.163 3.837 4 C -0.246 4.246 5 C 0.137 3.863 6 N -0.482 5.482 7 C 0.119 3.881 8 C 0.567 3.433 9 O -0.529 6.529 10 N -0.704 5.704 11 C 0.116 3.884 12 C -0.116 4.116 13 C -0.092 4.092 14 H 0.072 0.928 15 C 0.139 3.861 16 N -0.606 5.606 17 C -0.219 4.219 18 H 0.077 0.923 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.159 3.841 26 C -0.115 4.115 27 H 0.068 0.932 28 C -0.133 4.133 29 C -0.144 4.144 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.020 0.980 41 H 0.023 0.977 42 H 0.250 0.750 43 H 0.104 0.896 44 H 0.011 0.989 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.053 0.947 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.338 -9.368 -8.089 30.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.109 3.891 4 C -0.267 4.267 5 C -0.022 4.022 6 N -0.197 5.197 7 C -0.019 4.019 8 C 0.351 3.649 9 O -0.405 6.405 10 N -0.355 5.355 11 C -0.007 4.007 12 C -0.154 4.154 13 C -0.112 4.112 14 H 0.091 0.909 15 C 0.013 3.987 16 N -0.331 5.331 17 C -0.347 4.347 18 H 0.095 0.905 19 C -0.209 4.209 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.034 3.966 26 C -0.134 4.134 27 H 0.086 0.914 28 C -0.191 4.191 29 C -0.166 4.166 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.162 0.838 34 H 0.184 0.816 35 H 0.247 0.753 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.122 0.878 44 H 0.029 0.971 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -27.112 -9.419 -7.973 29.788 hybrid contribution -0.516 -0.393 0.779 1.013 sum -27.628 -9.812 -7.194 30.188 Atomic orbital electron populations 1.23196 0.77419 1.04711 1.01766 1.86112 1.22130 1.25913 1.87673 1.19213 0.92122 0.84902 0.92828 1.22424 1.01878 0.93202 1.09154 1.22596 0.89613 0.97265 0.92698 1.67613 1.07400 1.31205 1.13518 1.21017 0.94451 0.88651 0.97735 1.17761 0.85621 0.84062 0.77451 1.90818 1.63317 1.36567 1.49843 1.45908 1.08543 1.08127 1.72951 1.21604 0.78140 0.98044 1.02933 1.21788 0.97022 0.94067 1.02539 1.22149 0.92532 0.97884 0.98622 0.90919 1.21383 0.90923 0.93390 0.93004 1.44514 1.36482 1.33185 1.18952 1.19145 1.09165 1.12059 0.94339 0.90506 1.24782 0.99327 0.98323 0.98467 1.69817 1.33974 1.20183 1.33197 0.86012 0.80066 0.77231 0.82304 1.20559 1.21820 1.21819 1.21962 0.89301 0.97761 0.87597 1.22629 1.01060 0.94183 0.95577 0.91359 1.21632 1.00183 1.01189 0.96074 1.21421 0.92021 0.99863 1.03291 0.92137 0.92154 0.87587 0.83828 0.81607 0.75313 0.91181 0.90684 0.91079 0.91450 0.96242 0.95950 0.93890 0.87791 0.97098 0.93101 0.93834 0.92836 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.84 101.05 0.99 1.07 16 2 O -0.31 -2.41 10.51 -18.96 -0.20 -2.61 16 3 C 0.16 1.42 6.73 -38.85 -0.26 1.15 16 4 C -0.25 -1.58 9.11 -39.19 -0.36 -1.94 16 5 C 0.14 0.98 11.17 -17.62 -0.20 0.79 16 6 N -0.48 -4.85 9.54 -9.87 -0.09 -4.95 16 7 C 0.12 1.38 6.75 -83.04 -0.56 0.82 16 8 C 0.57 7.81 7.81 -12.18 -0.10 7.71 16 9 O -0.53 -8.89 16.32 5.35 0.09 -8.81 16 10 N -0.70 -8.69 5.55 -61.14 -0.34 -9.03 16 11 C 0.12 1.55 5.56 -4.04 -0.02 1.53 16 12 C -0.12 -1.55 4.74 -26.73 -0.13 -1.68 16 13 C -0.09 -1.58 2.38 -88.77 -0.21 -1.79 16 14 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 15 C 0.14 2.95 6.25 -3.06 -0.02 2.93 16 16 N -0.61 -15.86 3.39 -170.06 -0.58 -16.44 16 17 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 20 N -0.92 -27.31 10.09 55.49 0.56 -26.75 16 21 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.16 3.88 5.36 -2.53 -0.01 3.87 16 26 C -0.11 -2.14 3.09 -88.47 -0.27 -2.41 16 27 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 28 C -0.13 -2.07 9.30 37.16 0.35 -1.72 16 29 C -0.14 -1.55 9.60 -38.89 -0.37 -1.93 16 30 H 0.06 0.14 7.71 -51.93 -0.40 -0.26 16 31 H 0.06 0.13 7.71 -51.93 -0.40 -0.27 16 32 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.14 0.47 6.45 -52.49 -0.34 0.13 16 34 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.41 4.36 7.80 -40.82 -0.32 4.04 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 38 H 0.07 0.97 7.95 -51.92 -0.41 0.56 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.02 0.47 7.70 -51.93 -0.40 0.07 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.10 2.87 5.87 -51.93 -0.31 2.57 16 44 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 45 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.16 1.73 7.64 -52.49 -0.40 1.33 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -34.16 391.50 -8.66 -42.82 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.55 Total: 0.84 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.42 Total: 1.52 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.45 Total: -57.17 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.11 Total: -11.42 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.16 -8.66 -42.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103302249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.325 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds