Wall clock time and date at job start Tue Mar 31 2020 17:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35435 * 116.99660 * 2 1 4 4 N 1.32236 * 119.79871 * 359.97438 * 3 2 1 5 5 C 1.31884 * 121.79562 * 180.02562 * 4 3 2 6 6 C 1.38353 * 121.18630 * 0.02562 * 5 4 3 7 7 C 1.38335 * 119.45837 * 359.69048 * 6 5 4 8 8 C 1.39989 * 118.35056 * 0.57587 * 7 6 5 9 9 C 1.47524 * 120.60008 * 179.70847 * 8 7 6 10 10 O 1.21583 * 120.00114 * 179.72093 * 9 8 7 11 11 N 1.34776 * 119.99719 * 359.71817 * 9 8 7 12 12 C 1.46508 * 119.99579 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46707 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47125 * 179.97438 * 13 12 11 15 15 H 1.09000 * 110.63496 * 51.85936 * 14 13 12 16 16 C 1.54335 * 111.00070 * 288.78390 * 14 13 12 17 17 N 1.47022 * 107.26195 * 219.59791 * 16 14 13 18 18 C 1.36935 * 125.64427 * 178.84992 * 17 16 14 19 19 H 1.08000 * 120.00518 * 359.44761 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.71412 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47028 * 60.00888 * 22 20 18 24 24 H 1.48503 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47412 * 300.00497 * 22 20 18 26 26 C 1.47426 * 108.70625 * 358.58545 * 17 16 14 27 27 C 1.54912 * 104.82994 * 24.35934 * 26 17 16 28 28 H 1.08995 * 111.00742 * 81.05954 * 27 26 17 29 29 C 1.52998 * 111.00086 * 204.87731 * 27 26 17 30 30 H 1.09002 * 109.47630 * 59.99941 * 1 2 3 31 31 H 1.08996 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47154 * 300.00011 * 1 2 3 33 33 H 1.08001 * 119.40257 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.26777 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.82853 * 180.27429 * 7 6 5 36 36 H 0.96996 * 120.00291 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.46669 * 60.00382 * 12 11 9 38 38 H 1.08993 * 109.46871 * 299.99995 * 12 11 9 39 39 H 1.09009 * 109.47210 * 60.00549 * 13 12 11 40 40 H 1.09003 * 109.47538 * 300.00244 * 13 12 11 41 41 H 1.09007 * 109.99076 * 100.12594 * 16 14 13 42 42 H 1.09002 * 109.78210 * 338.95588 * 16 14 13 43 43 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.36404 * 143.19245 * 26 17 16 45 45 H 1.08995 * 110.36566 * 265.51629 * 26 17 16 46 46 H 1.08996 * 109.47303 * 58.54471 * 29 27 26 47 47 H 1.09006 * 109.46537 * 178.54319 * 29 27 26 48 48 H 1.08996 * 109.47165 * 298.54472 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 7 1.3196 2.3132 -0.0005 5 6 1.8770 3.5085 -0.0010 6 6 3.2525 3.6576 -0.0016 7 6 4.0586 2.5334 0.0049 8 6 3.4449 1.2753 -0.0005 9 6 4.2570 0.0436 -0.0005 10 8 3.7125 -1.0435 -0.0001 11 7 5.6024 0.1236 -0.0009 12 6 6.4088 -1.0996 -0.0003 13 6 7.8937 -0.7313 -0.0016 14 6 8.7360 -2.0087 -0.0003 15 1 8.4211 -2.6772 -0.8015 16 6 8.6539 -2.7239 1.3648 17 7 9.9982 -3.2343 1.6715 18 6 10.3546 -3.9121 2.8067 19 1 9.6196 -4.1040 3.5743 20 6 11.6621 -4.3476 2.9733 21 7 12.5593 -4.1087 2.0404 22 14 12.1485 -5.2716 4.5222 23 1 11.3403 -6.5125 4.6327 24 1 13.5898 -5.6233 4.4567 25 1 11.9024 -4.4132 5.7086 26 6 10.8973 -2.9011 0.5516 27 6 10.2451 -1.6713 -0.1281 28 1 10.4871 -0.7541 0.4087 29 6 10.6630 -1.5705 -1.5964 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.2483 4.3867 -0.0019 34 1 3.6932 4.6436 -0.0024 35 1 5.1349 2.6242 0.0090 36 1 6.0367 0.9908 -0.0009 37 1 6.1795 -1.6863 -0.8899 38 1 6.1800 -1.6851 0.8901 39 1 8.1233 -0.1443 0.8878 40 1 8.1222 -0.1459 -0.8923 41 1 7.9467 -3.5517 1.3099 42 1 8.3414 -2.0171 2.1335 43 1 13.4729 -4.4127 2.1570 44 1 11.8894 -2.6467 0.9245 45 1 10.9563 -3.7346 -0.1483 46 1 10.3720 -2.4809 -2.1203 47 1 10.1706 -0.7135 -2.0562 48 1 11.7439 -1.4452 -1.6588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103395985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:04 Heat of formation + Delta-G solvation = -40.707916 kcal Electronic energy + Delta-G solvation = -28084.671043 eV Core-core repulsion = 24139.596654 eV Total energy + Delta-G solvation = -3945.074389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93178 -40.33376 -39.61682 -38.90725 -36.45413 -35.05296 -33.88637 -32.53366 -32.27448 -31.72545 -28.65312 -28.13644 -27.41268 -26.01793 -25.11697 -23.96688 -23.34436 -21.88081 -21.38133 -20.65603 -19.54860 -18.86568 -18.54697 -18.13871 -17.20765 -17.08181 -16.62951 -16.45768 -16.00131 -15.90139 -15.66034 -15.36681 -15.06039 -14.95426 -14.58800 -14.29562 -14.25903 -13.99007 -13.68268 -13.53361 -13.46856 -13.34329 -12.85321 -12.76309 -12.72466 -12.71588 -12.39373 -12.21852 -12.17966 -11.97063 -11.77397 -11.42139 -11.28140 -11.21406 -11.04108 -10.99044 -10.73844 -10.60714 -10.13320 -9.54546 -8.86956 -7.76907 -5.21454 -0.34568 0.24438 1.44510 1.47963 1.54389 1.86312 2.05248 2.12475 2.49197 2.80619 3.26879 3.31290 3.69198 3.72116 3.75788 3.81188 3.92801 3.99540 4.09269 4.22197 4.30619 4.36483 4.37372 4.37858 4.50685 4.54190 4.64941 4.69281 4.75496 4.81451 4.85361 4.90356 5.02959 5.05303 5.09170 5.14505 5.21019 5.30478 5.40070 5.42152 5.44839 5.47045 5.56333 5.78560 5.86776 6.19807 6.33311 6.52550 6.75264 7.12238 7.23438 7.80258 8.44223 9.24080 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.002120 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.052916 B =13201.336942 C =13862.691669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.344 3.656 4 N -0.563 5.563 5 C 0.161 3.839 6 C -0.205 4.205 7 C -0.002 4.002 8 C -0.236 4.236 9 C 0.556 3.444 10 O -0.569 6.569 11 N -0.709 5.709 12 C 0.126 3.874 13 C -0.099 4.099 14 C -0.079 4.079 15 H 0.075 0.925 16 C 0.133 3.867 17 N -0.630 5.630 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.067 4.067 21 N -0.947 5.947 22 Si 0.980 3.020 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.158 3.842 27 C -0.099 4.099 28 H 0.074 0.926 29 C -0.127 4.127 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.201 0.799 34 H 0.187 0.813 35 H 0.177 0.823 36 H 0.415 0.585 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.008 0.992 42 H 0.026 0.974 43 H 0.247 0.753 44 H 0.070 0.930 45 H -0.019 1.019 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.405 22.240 -8.630 30.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.165 3.835 4 N -0.287 5.287 5 C 0.005 3.995 6 C -0.225 4.225 7 C -0.027 4.027 8 C -0.242 4.242 9 C 0.344 3.656 10 O -0.449 6.449 11 N -0.363 5.363 12 C 0.002 3.998 13 C -0.137 4.137 14 C -0.098 4.098 15 H 0.093 0.907 16 C 0.008 3.992 17 N -0.356 5.356 18 C -0.371 4.371 19 H 0.093 0.907 20 C -0.260 4.260 21 N -0.597 5.597 22 Si 0.808 3.192 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.202 1.202 26 C 0.034 3.966 27 C -0.119 4.119 28 H 0.093 0.907 29 C -0.184 4.184 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.217 0.783 34 H 0.204 0.796 35 H 0.195 0.805 36 H 0.253 0.747 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.026 0.974 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.088 0.912 45 H -0.001 1.001 46 H 0.065 0.935 47 H 0.101 0.899 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.423 20.966 -8.527 30.486 hybrid contribution 1.135 -0.879 0.986 1.742 sum -19.288 20.086 -7.541 28.851 Atomic orbital electron populations 1.23093 0.76147 1.04303 1.02597 1.86501 1.24033 1.24529 1.86000 1.20170 0.88820 0.85403 0.89105 1.67533 1.40771 0.99255 1.21182 1.23461 0.94610 0.93604 0.87832 1.22418 0.94092 1.01216 1.04726 1.22091 1.02521 0.89230 0.88907 1.20068 0.91289 0.95546 1.17325 1.18223 0.82639 0.88546 0.76233 1.90816 1.72652 1.30515 1.50896 1.45705 1.04948 1.10687 1.74937 1.21288 0.90560 0.86538 1.01375 1.21638 0.90878 0.96768 1.04379 1.22052 0.95271 0.96671 0.95840 0.90663 1.21579 0.86647 0.95157 0.95810 1.44860 1.06269 1.65709 1.18735 1.19408 0.94542 1.27728 0.95450 0.90705 1.25630 0.96096 1.02673 1.01586 1.70060 1.02695 1.52125 1.34833 0.85136 0.76628 0.78426 0.79052 1.20766 1.21632 1.20163 1.21803 0.95656 0.92205 0.86972 1.22466 0.94159 0.98085 0.97165 0.90743 1.21598 1.01188 1.02033 0.93616 0.91717 0.87233 0.91908 0.78272 0.79610 0.80528 0.74665 0.92055 0.93506 0.90471 0.88000 0.97431 0.95569 0.94314 0.91249 1.00126 0.93514 0.89904 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.38 113.37 1.18 1.80 16 2 O -0.31 -8.56 8.58 -66.50 -0.57 -9.13 16 3 C 0.34 8.34 7.51 85.13 0.64 8.98 16 4 N -0.56 -10.57 9.21 -307.99 -2.84 -13.41 16 5 C 0.16 1.63 11.17 84.71 0.95 2.58 16 6 C -0.20 -1.40 10.09 22.32 0.23 -1.17 16 7 C 0.00 -0.02 9.64 22.72 0.22 0.20 16 8 C -0.24 -5.06 5.90 -19.91 -0.12 -5.17 16 9 C 0.56 15.07 7.77 86.69 0.67 15.74 16 10 O -0.57 -21.16 15.19 16.84 0.26 -20.90 16 11 N -0.71 -14.52 5.51 -466.29 -2.57 -17.09 16 12 C 0.13 3.13 5.56 86.38 0.48 3.61 16 13 C -0.10 -2.20 4.74 30.59 0.14 -2.05 16 14 C -0.08 -2.53 2.38 -9.60 -0.02 -2.56 16 15 H 0.07 2.40 8.02 -2.39 -0.02 2.39 16 16 C 0.13 5.69 6.25 86.73 0.54 6.23 16 17 N -0.63 -33.76 3.39 -691.95 -2.35 -36.11 16 18 C -0.24 -14.16 10.27 84.04 0.86 -13.30 16 19 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 20 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 21 N -0.95 -57.61 10.09 21.65 0.22 -57.39 16 22 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 C 0.16 7.92 5.36 86.86 0.47 8.39 16 27 C -0.10 -3.48 3.09 -9.40 -0.03 -3.51 16 28 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 29 C -0.13 -3.52 9.30 71.98 0.67 -2.85 16 30 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.08 8.11 -2.38 -0.02 1.06 16 33 H 0.20 0.43 8.06 -2.91 -0.02 0.40 16 34 H 0.19 -0.24 8.06 -2.91 -0.02 -0.26 16 35 H 0.18 0.64 6.52 -2.91 -0.02 0.62 16 36 H 0.42 4.97 6.57 -92.71 -0.61 4.36 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.42 7.69 -2.39 -0.02 1.40 16 39 H 0.08 1.68 7.95 -2.38 -0.02 1.66 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.03 1.10 7.70 -2.39 -0.02 1.08 16 43 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.07 3.96 5.87 -2.39 -0.01 3.94 16 45 H -0.02 -1.05 8.04 -2.39 -0.02 -1.07 16 46 H 0.05 1.34 8.11 -2.39 -0.02 1.32 16 47 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 48 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -84.21 389.56 1.87 -82.34 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.35 Total: 9.31 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 7.34 Total: 13.45 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -7.53 Total: -124.00 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.31 Total: -30.04 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -84.21 1.87 -82.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103395985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.637 kcal (2) G-P(sol) polarization free energy of solvation -84.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds