Wall clock time and date at job start Tue Mar 31 2020 17:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.91390 * 2 1 4 4 C 1.55119 * 111.16455 * 236.06996 * 2 1 3 5 5 N 1.47424 * 104.94264 * 205.13177 * 4 2 1 6 6 C 1.36933 * 125.64823 * 203.96581 * 5 4 2 7 7 H 1.08003 * 120.00052 * 180.02562 * 6 5 4 8 8 C 1.38810 * 120.00212 * 0.04386 * 6 5 4 9 9 N 1.31621 * 119.99778 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00129 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46826 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.46957 * 120.00113 * 10 8 6 13 13 H 1.48498 * 109.46958 * 239.99959 * 10 8 6 14 14 C 1.47028 * 108.70206 * 24.00479 * 5 4 2 15 15 C 1.54325 * 107.27126 * 358.93768 * 14 5 4 16 16 H 1.09006 * 110.71545 * 96.34968 * 15 14 5 17 17 C 1.53000 * 110.71803 * 219.44524 * 15 14 5 18 18 C 1.53003 * 109.46990 * 291.15521 * 17 15 14 19 19 N 1.46499 * 109.46708 * 180.02562 * 18 17 15 20 20 C 1.34784 * 119.99893 * 180.02562 * 19 18 17 21 21 O 1.21610 * 119.99781 * 359.97438 * 20 19 18 22 22 C 1.47398 * 119.99800 * 179.72628 * 20 19 18 23 23 C 1.37352 * 128.56858 * 359.67946 * 22 20 19 24 24 O 1.33491 * 106.34487 * 179.85380 * 23 22 20 25 25 N 1.20660 * 113.15457 * 0.45262 * 24 23 22 26 26 C 1.30011 * 112.29951 * 359.71034 * 25 24 23 27 27 C 1.50707 * 127.33444 * 180.02562 * 26 25 24 28 28 C 1.53005 * 117.49568 * 8.73331 * 27 26 25 29 29 C 1.52993 * 117.50103 * 300.06763 * 27 26 25 30 30 H 1.09004 * 109.47103 * 296.10033 * 1 2 3 31 31 H 1.08999 * 109.46882 * 56.10087 * 1 2 3 32 32 H 1.08990 * 109.46987 * 176.09696 * 1 2 3 33 33 H 1.08995 * 110.41963 * 86.20600 * 4 2 1 34 34 H 1.09004 * 110.20675 * 323.95246 * 4 2 1 35 35 H 0.97003 * 119.99782 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.87970 * 239.52453 * 14 5 4 37 37 H 1.08999 * 110.00768 * 118.42882 * 14 5 4 38 38 H 1.09000 * 109.46641 * 171.15807 * 17 15 14 39 39 H 1.08994 * 109.47288 * 51.16108 * 17 15 14 40 40 H 1.08998 * 109.46692 * 60.00542 * 18 17 15 41 41 H 1.08994 * 109.47584 * 300.00406 * 18 17 15 42 42 H 0.97005 * 120.00261 * 0.02562 * 19 18 17 43 43 H 1.08002 * 126.83019 * 359.97438 * 23 22 20 44 44 H 1.09004 * 115.54664 * 154.39397 * 27 26 25 45 45 H 1.08993 * 117.50022 * 359.97438 * 28 27 26 46 46 H 1.08996 * 117.49501 * 145.02151 * 28 27 26 47 47 H 1.08999 * 117.50141 * 214.97748 * 29 27 26 48 48 H 1.09001 * 117.50011 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0183 0.0000 4 6 2.0901 -0.8074 -1.2002 5 7 3.4299 -1.2474 -0.7704 6 6 4.4676 -1.5741 -1.6020 7 1 5.4144 -1.8868 -1.1870 8 6 4.3027 -1.5032 -2.9785 9 7 3.1491 -1.1213 -3.4843 10 14 5.7185 -1.9483 -4.1129 11 1 6.8984 -2.3408 -3.3013 12 1 5.3170 -3.0818 -4.9842 13 1 6.0655 -0.7754 -4.9550 14 6 3.4672 -1.2780 0.6991 15 6 2.0861 -0.8078 1.2023 16 1 1.4450 -1.6614 1.4230 17 6 2.2349 0.0877 2.4339 18 6 2.7236 -0.7498 3.6174 19 7 2.8655 0.1077 4.7968 20 6 3.2867 -0.4170 5.9647 21 8 3.5484 -1.6023 6.0395 22 6 3.4352 0.4469 7.1497 23 6 3.2022 1.7959 7.2605 24 8 3.4738 2.1213 8.5264 25 7 3.8409 1.1823 9.1893 26 6 3.8757 0.0781 8.5039 27 6 4.2806 -1.2887 8.9928 28 6 4.5048 -1.4634 10.4963 29 6 5.7001 -1.4515 9.5398 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0252 -0.0699 33 1 2.1644 -0.1733 -2.0836 34 1 1.4548 -1.6696 -1.4033 35 1 3.0338 -1.0721 -4.4461 36 1 4.2434 -0.6056 1.0643 37 1 3.6624 -2.2927 1.0461 38 1 1.2705 0.5334 2.6777 39 1 2.9571 0.8767 2.2243 40 1 3.6880 -1.1954 3.3735 41 1 2.0014 -1.5388 3.8270 42 1 2.6563 1.0530 4.7372 43 1 2.8644 2.4609 6.4794 44 1 3.8520 -2.1293 8.4469 45 1 4.3599 -0.5897 11.1316 46 1 4.2244 -2.4190 10.9392 47 1 6.2054 -2.3993 9.3542 48 1 6.3414 -0.5701 9.5457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103427013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:11 Heat of formation + Delta-G solvation = 64.929849 kcal Electronic energy + Delta-G solvation = -27931.216766 eV Core-core repulsion = 23990.723174 eV Total energy + Delta-G solvation = -3940.493591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.29188 -39.77755 -38.18990 -37.76072 -35.34875 -33.71351 -33.23687 -32.34663 -31.02152 -30.66297 -27.18505 -25.82687 -25.13666 -24.61654 -23.79358 -22.72699 -22.07788 -21.09596 -20.46756 -19.76323 -19.28132 -18.52210 -18.05343 -16.97939 -16.86386 -16.09846 -15.80173 -15.71395 -15.14574 -14.97400 -14.41090 -14.29373 -13.80975 -13.66738 -13.55780 -13.01703 -12.84575 -12.46388 -12.11200 -12.10131 -12.01306 -11.95077 -11.71104 -11.64912 -11.52146 -11.15398 -11.05744 -10.86768 -10.80226 -10.76922 -10.33633 -10.15064 -10.09251 -9.90916 -9.88284 -9.83823 -9.73085 -9.34345 -9.24046 -8.64662 -6.81351 -5.64521 -3.05926 0.68474 1.36902 2.52103 2.93157 2.95076 3.39761 3.45561 3.46909 3.47924 3.60347 3.85754 4.43627 4.49496 4.53401 4.60845 4.65205 4.68622 4.87294 5.04918 5.10042 5.23745 5.29023 5.38828 5.44750 5.50242 5.53919 5.56683 5.63055 5.73781 5.75767 5.82661 5.89083 5.93611 6.09484 6.19022 6.23466 6.26630 6.30991 6.53828 6.60593 6.68378 6.81718 7.00508 7.21323 7.55361 7.65165 7.81599 7.87489 7.93830 8.37690 9.23647 9.84556 10.49737 11.39207 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.002091 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.411114 B =13388.425675 C =14293.778419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.922 5.922 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.116 4.116 18 C 0.119 3.881 19 N -0.721 5.721 20 C 0.592 3.408 21 O -0.524 6.524 22 C -0.245 4.245 23 C -0.008 4.008 24 O 0.099 5.901 25 N -0.358 5.358 26 C 0.102 3.898 27 C -0.087 4.087 28 C -0.166 4.166 29 C -0.157 4.157 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.251 0.749 36 H 0.022 0.978 37 H 0.020 0.980 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.398 0.602 43 H 0.227 0.773 44 H 0.140 0.860 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 6.820 23.547 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.348 4.348 7 H 0.095 0.905 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.004 4.004 19 N -0.372 5.372 20 C 0.377 3.623 21 O -0.401 6.401 22 C -0.252 4.252 23 C -0.090 4.090 24 O 0.039 5.961 25 N -0.064 5.064 26 C -0.060 4.060 27 C -0.106 4.106 28 C -0.203 4.203 29 C -0.195 4.195 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.029 0.971 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.231 0.769 43 H 0.243 0.757 44 H 0.158 0.842 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.125 0.875 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.860 6.271 24.611 25.558 hybrid contribution 0.408 -0.104 -1.536 1.592 sum -2.452 6.168 23.076 24.011 Atomic orbital electron populations 1.21632 0.95737 1.01365 1.00354 1.22668 0.94361 0.99329 0.97108 0.91397 1.22009 0.84107 0.95823 0.94700 1.44507 1.10668 1.78783 0.99172 1.19134 0.91136 1.37295 0.87260 0.90497 1.24787 0.97305 1.02125 0.96624 1.69814 1.22519 1.53995 1.10823 0.86008 0.81183 0.77607 0.80798 1.20537 1.21771 1.21776 1.21371 0.93657 0.97245 0.86400 1.22142 0.98170 0.97632 0.93248 0.90867 1.21797 1.01262 0.98623 0.93780 1.21575 1.02501 0.93253 0.83066 1.45895 1.68247 1.12941 1.10116 1.16816 0.77422 0.86650 0.81394 1.90815 1.49619 1.15388 1.84274 1.22333 1.12477 0.94150 0.96260 1.26429 0.98253 0.95761 0.88551 1.84587 1.61368 1.31849 1.18267 1.73625 1.17998 0.95968 1.18857 1.23861 0.98596 0.94750 0.88788 1.20393 1.01391 0.91499 0.97352 1.23067 1.02165 1.03916 0.91178 1.23039 0.90084 1.03932 1.02473 0.93840 0.92883 0.93000 0.87753 0.97083 0.93842 0.96015 0.96256 0.91532 0.91126 0.90603 0.91154 0.76857 0.75654 0.84243 0.88114 0.87775 0.87541 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.32 37.16 0.35 -1.60 16 2 C -0.11 -2.03 3.10 -88.35 -0.27 -2.30 16 3 H 0.07 1.20 8.05 -51.92 -0.42 0.78 16 4 C 0.16 3.76 5.37 -2.42 -0.01 3.75 16 5 N -0.61 -15.43 3.40 -169.94 -0.58 -16.01 16 6 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 7 H 0.08 2.10 7.83 -52.48 -0.41 1.68 16 8 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 9 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 10 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.14 2.83 6.11 -3.06 -0.02 2.81 16 15 C -0.09 -1.47 2.42 -88.78 -0.21 -1.69 16 16 H 0.07 1.15 8.04 -51.93 -0.42 0.74 16 17 C -0.12 -1.35 4.72 -26.73 -0.13 -1.48 16 18 C 0.12 1.38 5.54 -4.04 -0.02 1.36 16 19 N -0.72 -6.86 5.55 -61.39 -0.34 -7.20 16 20 C 0.59 6.99 7.81 -12.53 -0.10 6.89 16 21 O -0.52 -8.15 15.80 5.27 0.08 -8.07 16 22 C -0.24 -2.43 6.47 -102.90 -0.67 -3.09 16 23 C -0.01 -0.05 11.85 30.41 0.36 0.31 16 24 O 0.10 0.85 11.06 18.66 0.21 1.05 16 25 N -0.36 -3.81 11.71 34.78 0.41 -3.41 16 26 C 0.10 1.12 7.07 -79.76 -0.56 0.56 16 27 C -0.09 -0.90 5.90 -91.77 -0.54 -1.44 16 28 C -0.17 -1.36 10.17 -26.68 -0.27 -1.63 16 29 C -0.16 -1.36 10.24 -26.69 -0.27 -1.63 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.10 2.81 5.87 -51.93 -0.30 2.51 16 34 H 0.01 0.29 7.99 -51.93 -0.41 -0.13 16 35 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.02 0.44 7.73 -51.93 -0.40 0.04 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 40 H 0.08 1.04 7.58 -51.93 -0.39 0.65 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.40 2.39 7.66 -40.82 -0.31 2.07 16 43 H 0.23 0.29 7.68 -52.49 -0.40 -0.12 16 44 H 0.14 1.55 7.29 -51.93 -0.38 1.17 16 45 H 0.10 0.85 7.97 -51.93 -0.41 0.44 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 393.52 15.07 5.93 5.93 Total: -1.00 -33.91 393.52 -9.00 -42.91 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.62 Total: -0.11 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.63 Total: -5.93 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.05 Total: -52.89 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.29 Total: -7.01 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.91 -9.00 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103427013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.836 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds