Wall clock time and date at job start Tue Mar 31 2020 17:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.91390 * 2 1 4 4 C 1.55119 * 111.16455 * 236.06996 * 2 1 3 5 5 N 1.47424 * 104.94264 * 205.13177 * 4 2 1 6 6 C 1.36933 * 125.64823 * 203.96581 * 5 4 2 7 7 H 1.08003 * 120.00052 * 180.02562 * 6 5 4 8 8 C 1.38810 * 120.00212 * 0.04386 * 6 5 4 9 9 N 1.31621 * 119.99778 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00129 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46826 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.46957 * 120.00113 * 10 8 6 13 13 H 1.48498 * 109.46958 * 239.99959 * 10 8 6 14 14 C 1.47028 * 108.70206 * 24.00479 * 5 4 2 15 15 C 1.54325 * 107.27126 * 358.93768 * 14 5 4 16 16 H 1.09006 * 110.71545 * 96.34968 * 15 14 5 17 17 C 1.53000 * 110.71803 * 219.44524 * 15 14 5 18 18 C 1.53003 * 109.46990 * 291.15521 * 17 15 14 19 19 N 1.46499 * 109.46708 * 180.02562 * 18 17 15 20 20 C 1.34784 * 119.99893 * 180.02562 * 19 18 17 21 21 O 1.21610 * 119.99781 * 359.97438 * 20 19 18 22 22 C 1.47398 * 119.99800 * 179.72628 * 20 19 18 23 23 C 1.37352 * 128.56858 * 359.67946 * 22 20 19 24 24 O 1.33491 * 106.34487 * 179.85380 * 23 22 20 25 25 N 1.20660 * 113.15457 * 0.45262 * 24 23 22 26 26 C 1.30011 * 112.29951 * 359.71034 * 25 24 23 27 27 C 1.50707 * 127.33444 * 180.02562 * 26 25 24 28 28 C 1.53005 * 117.49568 * 8.73331 * 27 26 25 29 29 C 1.52993 * 117.50103 * 300.06763 * 27 26 25 30 30 H 1.09004 * 109.47103 * 296.10033 * 1 2 3 31 31 H 1.08999 * 109.46882 * 56.10087 * 1 2 3 32 32 H 1.08990 * 109.46987 * 176.09696 * 1 2 3 33 33 H 1.08995 * 110.41963 * 86.20600 * 4 2 1 34 34 H 1.09004 * 110.20675 * 323.95246 * 4 2 1 35 35 H 0.97003 * 119.99782 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.87970 * 239.52453 * 14 5 4 37 37 H 1.08999 * 110.00768 * 118.42882 * 14 5 4 38 38 H 1.09000 * 109.46641 * 171.15807 * 17 15 14 39 39 H 1.08994 * 109.47288 * 51.16108 * 17 15 14 40 40 H 1.08998 * 109.46692 * 60.00542 * 18 17 15 41 41 H 1.08994 * 109.47584 * 300.00406 * 18 17 15 42 42 H 0.97005 * 120.00261 * 0.02562 * 19 18 17 43 43 H 1.08002 * 126.83019 * 359.97438 * 23 22 20 44 44 H 1.09004 * 115.54664 * 154.39397 * 27 26 25 45 45 H 1.08993 * 117.50022 * 359.97438 * 28 27 26 46 46 H 1.08996 * 117.49501 * 145.02151 * 28 27 26 47 47 H 1.08999 * 117.50141 * 214.97748 * 29 27 26 48 48 H 1.09001 * 117.50011 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0183 0.0000 4 6 2.0901 -0.8074 -1.2002 5 7 3.4299 -1.2474 -0.7704 6 6 4.4676 -1.5741 -1.6020 7 1 5.4144 -1.8868 -1.1870 8 6 4.3027 -1.5032 -2.9785 9 7 3.1491 -1.1213 -3.4843 10 14 5.7185 -1.9483 -4.1129 11 1 6.8984 -2.3408 -3.3013 12 1 5.3170 -3.0818 -4.9842 13 1 6.0655 -0.7754 -4.9550 14 6 3.4672 -1.2780 0.6991 15 6 2.0861 -0.8078 1.2023 16 1 1.4450 -1.6614 1.4230 17 6 2.2349 0.0877 2.4339 18 6 2.7236 -0.7498 3.6174 19 7 2.8655 0.1077 4.7968 20 6 3.2867 -0.4170 5.9647 21 8 3.5484 -1.6023 6.0395 22 6 3.4352 0.4469 7.1497 23 6 3.2022 1.7959 7.2605 24 8 3.4738 2.1213 8.5264 25 7 3.8409 1.1823 9.1893 26 6 3.8757 0.0781 8.5039 27 6 4.2806 -1.2887 8.9928 28 6 4.5048 -1.4634 10.4963 29 6 5.7001 -1.4515 9.5398 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0252 -0.0699 33 1 2.1644 -0.1733 -2.0836 34 1 1.4548 -1.6696 -1.4033 35 1 3.0338 -1.0721 -4.4461 36 1 4.2434 -0.6056 1.0643 37 1 3.6624 -2.2927 1.0461 38 1 1.2705 0.5334 2.6777 39 1 2.9571 0.8767 2.2243 40 1 3.6880 -1.1954 3.3735 41 1 2.0014 -1.5388 3.8270 42 1 2.6563 1.0530 4.7372 43 1 2.8644 2.4609 6.4794 44 1 3.8520 -2.1293 8.4469 45 1 4.3599 -0.5897 11.1316 46 1 4.2244 -2.4190 10.9392 47 1 6.2054 -2.3993 9.3542 48 1 6.3414 -0.5701 9.5457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103427013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:10 Heat of formation + Delta-G solvation = 43.355985 kcal Electronic energy + Delta-G solvation = -27932.152279 eV Core-core repulsion = 23990.723174 eV Total energy + Delta-G solvation = -3941.429104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.99545 -40.70941 -39.67114 -38.47029 -36.47938 -35.06455 -34.31451 -33.16119 -32.52321 -32.10368 -28.60438 -27.50124 -26.26285 -25.43194 -24.99347 -23.46679 -23.33726 -21.95567 -21.36328 -21.16036 -20.62509 -19.29898 -18.86146 -18.75929 -17.75360 -17.16379 -16.93426 -16.51956 -16.46359 -15.95689 -15.84423 -15.52915 -15.06881 -14.89973 -14.56189 -14.38090 -14.12144 -13.67881 -13.49860 -13.36140 -13.15519 -12.84609 -12.77568 -12.74870 -12.71797 -12.59694 -12.38924 -12.35563 -12.16634 -11.92954 -11.77361 -11.54919 -11.40234 -11.26798 -11.20279 -10.91619 -10.84973 -10.73842 -10.57498 -10.11981 -8.86359 -7.77079 -5.21354 0.06961 0.63314 1.45112 1.45850 1.56325 1.85175 2.10878 2.27061 2.48968 2.77513 2.93348 3.18922 3.31484 3.72990 3.74893 3.77273 3.84389 3.93892 3.96549 4.00377 4.03992 4.09433 4.31326 4.37815 4.54090 4.60791 4.64015 4.65875 4.68557 4.77517 4.82505 4.86169 4.90039 5.03924 5.04759 5.08673 5.12392 5.15226 5.22506 5.31125 5.38733 5.43552 5.48089 5.57914 5.79190 5.87512 6.33809 6.47788 7.12600 7.13575 7.18914 7.80799 8.44287 9.24155 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.002091 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.411114 B =13388.425675 C =14293.778419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.074 0.926 4 C 0.158 3.842 5 N -0.630 5.630 6 C -0.238 4.238 7 H 0.076 0.924 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.269 1.269 12 H -0.293 1.293 13 H -0.288 1.288 14 C 0.133 3.867 15 C -0.079 4.079 16 H 0.076 0.924 17 C -0.100 4.100 18 C 0.125 3.875 19 N -0.703 5.703 20 C 0.592 3.408 21 O -0.573 6.573 22 C -0.278 4.278 23 C 0.036 3.964 24 O 0.101 5.899 25 N -0.376 5.376 26 C 0.083 3.917 27 C -0.109 4.109 28 C -0.152 4.152 29 C -0.155 4.155 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.068 0.932 34 H -0.020 1.020 35 H 0.246 0.754 36 H 0.027 0.973 37 H 0.009 0.991 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.419 0.581 43 H 0.283 0.717 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.116 0.884 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 9.015 25.067 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.033 3.967 5 N -0.356 5.356 6 C -0.367 4.367 7 H 0.094 0.906 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.194 1.194 12 H -0.220 1.220 13 H -0.215 1.215 14 C 0.008 3.992 15 C -0.098 4.098 16 H 0.095 0.905 17 C -0.138 4.138 18 C 0.002 3.998 19 N -0.355 5.355 20 C 0.379 3.621 21 O -0.453 6.453 22 C -0.286 4.286 23 C -0.046 4.046 24 O 0.042 5.958 25 N -0.083 5.083 26 C -0.079 4.079 27 C -0.128 4.128 28 C -0.189 4.189 29 C -0.193 4.193 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.086 0.914 34 H -0.002 1.002 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.027 0.973 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.256 0.744 43 H 0.298 0.702 44 H 0.141 0.859 45 H 0.116 0.884 46 H 0.138 0.862 47 H 0.134 0.866 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.564 8.512 26.164 27.744 hybrid contribution 0.632 -0.783 -2.017 2.254 sum -2.931 7.730 24.147 25.523 Atomic orbital electron populations 1.21599 0.92966 1.01442 1.02446 1.22503 0.96478 0.98479 0.94468 0.90764 1.21840 0.83566 0.94779 0.96504 1.44866 1.10661 1.78771 1.01294 1.19472 0.91989 1.37067 0.88181 0.90623 1.25619 0.99790 1.02628 0.98059 1.70078 1.24175 1.54902 1.10612 0.85008 0.78653 0.77021 0.78660 1.19367 1.21982 1.21514 1.21591 0.96849 0.96979 0.83810 1.22049 0.95021 0.98317 0.94439 0.90526 1.21646 1.03481 0.97508 0.91140 1.21330 1.01028 0.93552 0.83901 1.45619 1.67367 1.13782 1.08729 1.17062 0.76582 0.86232 0.82191 1.90793 1.51872 1.17566 1.85079 1.22183 1.15489 0.95595 0.95334 1.27338 0.94232 0.94846 0.88190 1.84563 1.60883 1.31219 1.19139 1.73628 1.18963 0.96123 1.19572 1.24090 0.99063 0.95059 0.89681 1.20382 1.02569 0.91232 0.98607 1.23111 1.01188 1.04572 0.90049 1.23090 0.89685 1.04244 1.02305 0.89793 0.93009 0.93699 0.91383 1.00169 0.94377 0.95500 0.97297 0.87886 0.90378 0.93187 0.91703 0.74354 0.70216 0.85881 0.88365 0.86159 0.86601 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.32 71.98 0.67 -2.68 16 2 C -0.10 -3.35 3.10 -9.33 -0.03 -3.38 16 3 H 0.07 2.43 8.05 -2.38 -0.02 2.41 16 4 C 0.16 7.71 5.37 86.93 0.47 8.18 16 5 N -0.63 -32.88 3.40 -691.56 -2.35 -35.23 16 6 C -0.24 -13.64 10.27 84.03 0.86 -12.78 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 8 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 9 N -0.95 -56.99 10.09 21.65 0.22 -56.77 16 10 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 C 0.13 5.40 6.11 86.73 0.53 5.93 16 15 C -0.08 -2.36 2.42 -9.60 -0.02 -2.38 16 16 H 0.08 2.27 8.04 -2.38 -0.02 2.25 16 17 C -0.10 -1.94 4.72 30.60 0.14 -1.79 16 18 C 0.13 2.66 5.54 86.38 0.48 3.14 16 19 N -0.70 -11.29 5.55 -466.39 -2.59 -13.88 16 20 C 0.59 13.24 7.81 86.65 0.68 13.92 16 21 O -0.57 -18.13 15.80 -4.06 -0.06 -18.19 16 22 C -0.28 -5.02 6.47 -18.75 -0.12 -5.14 16 23 C 0.04 0.32 11.85 67.61 0.80 1.12 16 24 O 0.10 1.45 11.06 77.00 0.85 2.30 16 25 N -0.38 -7.54 11.71 -44.78 -0.52 -8.06 16 26 C 0.08 1.77 7.07 45.16 0.32 2.09 16 27 C -0.11 -2.28 5.90 -11.54 -0.07 -2.35 16 28 C -0.15 -2.43 10.17 30.62 0.31 -2.12 16 29 C -0.16 -2.68 10.24 30.62 0.31 -2.37 16 30 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.25 8.08 -2.39 -0.02 1.23 16 33 H 0.07 3.82 5.87 -2.39 -0.01 3.81 16 34 H -0.02 -1.05 7.99 -2.38 -0.02 -1.07 16 35 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.03 1.07 7.73 -2.39 -0.02 1.05 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.48 8.00 -2.39 -0.02 1.46 16 40 H 0.05 1.34 7.58 -2.39 -0.02 1.32 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.42 2.97 7.66 -92.70 -0.71 2.26 16 43 H 0.28 -1.12 7.68 -2.91 -0.02 -1.14 16 44 H 0.12 2.94 7.29 -2.38 -0.02 2.92 16 45 H 0.10 1.62 7.97 -2.39 -0.02 1.60 16 46 H 0.12 1.47 8.14 -2.39 -0.02 1.46 16 47 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -79.83 393.52 3.63 -76.20 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.26 Total: 9.37 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 5.80 Total: -4.10 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -5.24 Total: -113.94 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.79 Total: -15.89 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -79.83 3.63 -76.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103427013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.554 kcal (2) G-P(sol) polarization free energy of solvation -79.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds