Wall clock time and date at job start Tue Mar 31 2020 17:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6 13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21583 * 120.00167 * 359.97438 * 20 19 18 22 22 C 1.47512 * 119.99998 * 179.97438 * 20 19 18 23 23 C 1.36823 * 126.94674 * 179.70676 * 22 20 19 24 24 C 1.41261 * 103.84752 * 179.90823 * 23 22 20 25 25 C 1.50695 * 126.70681 * 180.12526 * 24 23 22 26 26 C 1.53000 * 117.50096 * 344.00796 * 25 24 23 27 27 C 1.52999 * 117.50120 * 275.34395 * 25 24 23 28 28 N 1.30133 * 106.59002 * 0.36471 * 24 23 22 29 29 O 1.20891 * 111.98217 * 359.76163 * 28 24 23 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 39 39 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 40 40 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 41 41 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 42 42 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 43 43 H 1.07997 * 128.07441 * 0.02601 * 23 22 20 44 44 H 1.09007 * 115.55093 * 129.67194 * 25 24 23 45 45 H 1.09003 * 117.49463 * 359.97438 * 26 25 24 46 46 H 1.08994 * 117.50493 * 145.01681 * 26 25 24 47 47 H 1.08996 * 117.49934 * 214.97390 * 27 25 24 48 48 H 1.08992 * 117.49768 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.8932 -2.3243 -3.3139 12 1 5.3104 -3.0691 -4.9931 13 1 6.0512 -0.7601 -4.9651 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3958 -1.6319 6.0779 22 6 3.3157 0.4232 7.1814 23 6 3.6781 0.0338 8.4419 24 6 3.6601 1.2349 9.1851 25 6 3.9846 1.3939 10.6481 26 6 4.0078 0.1287 11.5082 27 6 2.8612 1.1325 11.6534 28 7 3.3036 2.1766 8.3608 29 8 3.1075 1.7519 7.2461 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9836 0.8519 2.2422 39 1 1.2757 0.5631 2.6523 40 1 1.9108 -1.5272 3.8253 41 1 3.6187 -1.2383 3.4154 42 1 2.6254 1.0460 4.7454 43 1 3.9229 -0.9597 8.7875 44 1 4.7022 2.1786 10.8880 45 1 3.7878 -0.8186 11.0158 46 1 4.7401 0.0812 12.3140 47 1 2.8399 1.7450 12.5548 48 1 1.8876 0.8452 11.2566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103481848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:48 Heat of formation + Delta-G solvation = 66.960745 kcal Electronic energy + Delta-G solvation = -27605.975275 eV Core-core repulsion = 23665.569750 eV Total energy + Delta-G solvation = -3940.405525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.40493 -39.90883 -38.17882 -38.10793 -35.51113 -33.75639 -33.33321 -32.46280 -31.04187 -30.65747 -27.15079 -25.74973 -25.16501 -24.74016 -23.66437 -22.85283 -22.32337 -21.96275 -20.35904 -19.70448 -19.25237 -18.60965 -18.14249 -16.86482 -16.66329 -16.22049 -15.90214 -15.72415 -15.08373 -14.99532 -14.44466 -14.35992 -14.02984 -13.76875 -13.57151 -13.00538 -12.83690 -12.66830 -12.31694 -12.11891 -12.07766 -12.05932 -11.70116 -11.66940 -11.50664 -11.13968 -11.05251 -10.99599 -10.86190 -10.75881 -10.62923 -10.30962 -10.08237 -10.06001 -9.89236 -9.83038 -9.71497 -9.34070 -9.31905 -8.63081 -6.79625 -5.63019 -3.04313 0.44404 1.57852 2.25640 2.69621 2.90917 3.10585 3.40864 3.46587 3.48955 3.52734 4.09254 4.25044 4.41742 4.50732 4.50944 4.57775 4.81839 4.86241 4.96766 5.05514 5.08918 5.25211 5.29002 5.43787 5.45327 5.50970 5.51068 5.54235 5.55038 5.63949 5.72601 5.87041 5.94571 6.06098 6.18484 6.24924 6.26899 6.33153 6.56542 6.62712 6.69649 6.83475 7.01830 7.05570 7.57601 7.63821 7.66654 7.75785 7.89298 8.39391 9.25152 9.86140 10.51379 11.40734 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.001853 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.298250 B =15107.332142 C =15761.574048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.922 5.922 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.139 3.861 15 C -0.093 4.093 16 H 0.073 0.927 17 C -0.118 4.118 18 C 0.116 3.884 19 N -0.710 5.710 20 C 0.602 3.398 21 O -0.511 6.511 22 C -0.079 4.079 23 C -0.149 4.149 24 C 0.042 3.958 25 C -0.090 4.090 26 C -0.162 4.162 27 C -0.162 4.162 28 N -0.339 5.339 29 O 0.120 5.880 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.251 0.749 36 H 0.020 0.980 37 H 0.023 0.977 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.407 0.593 43 H 0.183 0.817 44 H 0.126 0.874 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 5.878 27.199 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.087 0.913 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.348 4.348 7 H 0.095 0.905 8 C -0.208 4.208 9 N -0.571 5.571 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.156 4.156 18 C -0.006 4.006 19 N -0.361 5.361 20 C 0.384 3.616 21 O -0.386 6.386 22 C -0.145 4.145 23 C -0.171 4.171 24 C -0.116 4.116 25 C -0.109 4.109 26 C -0.200 4.200 27 C -0.200 4.200 28 N -0.038 5.038 29 O 0.046 5.954 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.029 0.971 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.242 0.758 43 H 0.200 0.800 44 H 0.144 0.856 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.415 6.290 27.130 28.058 hybrid contribution 0.833 -0.582 -0.519 1.141 sum -2.582 5.708 26.611 27.339 Atomic orbital electron populations 1.21635 0.95748 1.01133 1.00594 1.22632 0.94376 0.99388 0.97046 0.91332 1.21967 0.84066 0.95867 0.94748 1.44508 1.10527 1.78920 0.99165 1.19138 0.90987 1.37490 0.87233 0.90494 1.24785 0.97274 1.02141 0.96630 1.69813 1.22367 1.54042 1.10898 0.86013 0.81182 0.77588 0.80826 1.20549 1.21792 1.21788 1.21384 0.93683 0.97218 0.86434 1.22152 0.98227 0.97607 0.93223 0.90851 1.21812 1.01770 0.98551 0.93442 1.21674 1.02825 0.93276 0.82866 1.46000 1.68012 1.13018 1.09049 1.16510 0.78177 0.85942 0.80927 1.90901 1.50342 1.13509 1.83854 1.24306 1.07516 0.84753 0.97932 1.22788 1.02392 1.01007 0.90929 1.22670 1.02677 0.89110 0.97102 1.20132 1.03892 1.02573 0.84269 1.23090 1.01590 0.93606 1.01673 1.23061 0.94191 1.02740 0.99984 1.73716 1.15892 1.23260 0.90965 1.85006 1.64252 1.20822 1.25337 0.93081 0.93836 0.92794 0.87763 0.97068 0.93851 0.96241 0.95961 0.90933 0.91315 0.90804 0.90326 0.75756 0.79963 0.85586 0.88002 0.87508 0.87680 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.30 37.16 0.35 -1.64 16 2 C -0.11 -2.05 3.09 -88.47 -0.27 -2.32 16 3 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 4 C 0.16 3.78 5.36 -2.53 -0.01 3.77 16 5 N -0.61 -15.46 3.39 -170.06 -0.58 -16.04 16 6 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 8 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 9 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 10 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.14 2.83 6.25 -3.06 -0.02 2.81 16 15 C -0.09 -1.49 2.38 -88.77 -0.21 -1.70 16 16 H 0.07 1.15 8.02 -51.93 -0.42 0.74 16 17 C -0.12 -1.41 4.74 -26.73 -0.13 -1.54 16 18 C 0.12 1.35 5.56 -4.04 -0.02 1.33 16 19 N -0.71 -7.21 5.55 -61.36 -0.34 -7.55 16 20 C 0.60 7.05 7.82 -12.48 -0.10 6.95 16 21 O -0.51 -7.59 16.91 5.29 0.09 -7.50 16 22 C -0.08 -0.82 7.29 -36.32 -0.26 -1.08 16 23 C -0.15 -1.38 10.26 -38.95 -0.40 -1.78 16 24 C 0.04 0.39 6.94 -82.17 -0.57 -0.18 16 25 C -0.09 -0.60 6.33 -91.77 -0.58 -1.18 16 26 C -0.16 -0.77 10.05 -26.69 -0.27 -1.04 16 27 C -0.16 -0.85 10.24 -26.69 -0.27 -1.13 16 28 N -0.34 -3.68 12.04 33.52 0.40 -3.28 16 29 O 0.12 1.23 11.04 15.54 0.17 1.41 16 30 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 2.83 5.87 -51.93 -0.31 2.52 16 34 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 37 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 38 H 0.07 0.89 7.95 -51.92 -0.41 0.47 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.04 7.69 -51.93 -0.40 0.64 16 42 H 0.41 3.20 8.30 -40.82 -0.34 2.86 16 43 H 0.18 1.39 7.61 -52.49 -0.40 0.99 16 44 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.47 7.33 -51.93 -0.38 0.09 16 46 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -32.49 395.34 -9.44 -41.94 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.66 Total: -0.23 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.03 Total: -5.53 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.05 Total: -53.23 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: 0.26 Total: -6.10 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.49 -9.44 -41.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103481848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.896 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds