Wall clock time and date at job start Tue Mar 31 2020 17:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6 13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21583 * 120.00167 * 359.97438 * 20 19 18 22 22 C 1.47512 * 119.99998 * 179.97438 * 20 19 18 23 23 C 1.36823 * 126.94674 * 179.70676 * 22 20 19 24 24 C 1.41261 * 103.84752 * 179.90823 * 23 22 20 25 25 C 1.50695 * 126.70681 * 180.12526 * 24 23 22 26 26 C 1.53000 * 117.50096 * 344.00796 * 25 24 23 27 27 C 1.52999 * 117.50120 * 275.34395 * 25 24 23 28 28 N 1.30133 * 106.59002 * 0.36471 * 24 23 22 29 29 O 1.20891 * 111.98217 * 359.76163 * 28 24 23 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 39 39 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 40 40 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 41 41 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 42 42 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 43 43 H 1.07997 * 128.07441 * 0.02601 * 23 22 20 44 44 H 1.09007 * 115.55093 * 129.67194 * 25 24 23 45 45 H 1.09003 * 117.49463 * 359.97438 * 26 25 24 46 46 H 1.08994 * 117.50493 * 145.01681 * 26 25 24 47 47 H 1.08996 * 117.49934 * 214.97390 * 27 25 24 48 48 H 1.08992 * 117.49768 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.8932 -2.3243 -3.3139 12 1 5.3104 -3.0691 -4.9931 13 1 6.0512 -0.7601 -4.9651 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3958 -1.6319 6.0779 22 6 3.3157 0.4232 7.1814 23 6 3.6781 0.0338 8.4419 24 6 3.6601 1.2349 9.1851 25 6 3.9846 1.3939 10.6481 26 6 4.0078 0.1287 11.5082 27 6 2.8612 1.1325 11.6534 28 7 3.3036 2.1766 8.3608 29 8 3.1075 1.7519 7.2461 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9836 0.8519 2.2422 39 1 1.2757 0.5631 2.6523 40 1 1.9108 -1.5272 3.8253 41 1 3.6187 -1.2383 3.4154 42 1 2.6254 1.0460 4.7454 43 1 3.9229 -0.9597 8.7875 44 1 4.7022 2.1786 10.8880 45 1 3.7878 -0.8186 11.0158 46 1 4.7401 0.0812 12.3140 47 1 2.8399 1.7450 12.5548 48 1 1.8876 0.8452 11.2566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103481848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:47 Heat of formation + Delta-G solvation = 47.351129 kcal Electronic energy + Delta-G solvation = -27606.825612 eV Core-core repulsion = 23665.569750 eV Total energy + Delta-G solvation = -3941.255862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.15656 -40.87497 -39.69733 -38.57806 -36.63521 -35.07418 -34.41006 -33.39645 -32.52042 -32.18149 -28.61574 -27.47879 -26.04151 -25.76470 -24.79267 -23.59223 -23.13779 -22.89465 -21.48062 -21.10190 -20.53339 -19.41474 -18.91237 -18.85503 -17.37174 -17.27925 -17.02040 -16.60167 -16.42722 -15.98264 -15.62341 -15.47657 -15.15473 -14.97456 -14.72350 -14.55727 -14.17655 -13.68865 -13.50032 -13.35892 -13.23144 -12.95316 -12.85485 -12.77637 -12.72617 -12.43019 -12.39732 -12.23162 -12.19221 -11.92930 -11.79818 -11.62294 -11.41895 -11.36602 -11.23576 -11.00962 -10.95644 -10.74393 -10.73385 -10.24313 -8.85288 -7.76310 -5.20371 -0.35738 0.87785 1.42679 1.45518 1.46257 1.56707 1.81544 2.09492 2.49588 2.61589 2.97234 3.32327 3.42624 3.70962 3.75203 3.77134 3.83449 3.93479 3.93817 4.02665 4.09110 4.18514 4.27407 4.35635 4.39405 4.53983 4.66430 4.71497 4.73985 4.79387 4.81489 4.86030 4.97624 5.01187 5.04359 5.07015 5.13262 5.18981 5.20382 5.25524 5.33189 5.43438 5.48286 5.58000 5.79384 5.88008 6.20903 6.34351 6.83763 6.96674 7.13239 7.81629 8.45236 9.25058 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.001853 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.298250 B =15107.332142 C =15761.574048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.071 0.929 4 C 0.159 3.841 5 N -0.630 5.630 6 C -0.238 4.238 7 H 0.077 0.923 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.268 1.268 12 H -0.293 1.293 13 H -0.290 1.290 14 C 0.132 3.868 15 C -0.078 4.078 16 H 0.080 0.920 17 C -0.103 4.103 18 C 0.122 3.878 19 N -0.697 5.697 20 C 0.606 3.394 21 O -0.546 6.546 22 C -0.087 4.087 23 C -0.146 4.146 24 C 0.044 3.956 25 C -0.110 4.110 26 C -0.150 4.150 27 C -0.159 4.159 28 N -0.360 5.360 29 O 0.118 5.882 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.067 0.933 34 H -0.018 1.018 35 H 0.246 0.754 36 H 0.014 0.986 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.421 0.579 43 H 0.197 0.803 44 H 0.133 0.867 45 H 0.103 0.897 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 6.629 29.695 30.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.089 0.911 4 C 0.034 3.966 5 N -0.356 5.356 6 C -0.367 4.367 7 H 0.095 0.905 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.193 1.193 12 H -0.220 1.220 13 H -0.217 1.217 14 C 0.007 3.993 15 C -0.097 4.097 16 H 0.099 0.901 17 C -0.141 4.141 18 C -0.001 4.001 19 N -0.348 5.348 20 C 0.389 3.611 21 O -0.425 6.425 22 C -0.153 4.153 23 C -0.168 4.168 24 C -0.113 4.113 25 C -0.129 4.129 26 C -0.188 4.188 27 C -0.197 4.197 28 N -0.061 5.061 29 O 0.045 5.955 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.000 1.000 35 H 0.056 0.944 36 H 0.032 0.968 37 H 0.045 0.955 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.258 0.742 43 H 0.214 0.786 44 H 0.151 0.849 45 H 0.121 0.879 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.630 7.073 29.647 30.695 hybrid contribution 0.917 -0.827 -1.253 1.759 sum -2.713 6.246 28.394 29.200 Atomic orbital electron populations 1.21596 0.93009 1.01698 1.02152 1.22472 0.96498 0.98449 0.94683 0.91076 1.21780 0.83602 0.94811 0.96387 1.44860 1.10488 1.78909 1.01302 1.19491 0.91871 1.37186 0.88141 0.90488 1.25622 0.99754 1.02668 0.98102 1.70079 1.24055 1.54998 1.10667 0.85007 0.78682 0.76967 0.78670 1.19290 1.21971 1.21662 1.21607 0.96703 0.97165 0.83819 1.22050 0.95272 0.98269 0.94136 0.90123 1.21664 1.03603 0.97578 0.91270 1.21492 1.01978 0.93403 0.83215 1.45838 1.67195 1.13583 1.08210 1.16576 0.77533 0.85555 0.81395 1.90883 1.52079 1.15022 1.84484 1.24106 1.08500 0.84916 0.97797 1.23063 1.01421 1.01721 0.90572 1.23088 1.01465 0.88605 0.98130 1.20312 1.05222 1.04304 0.83079 1.23212 1.01460 0.92850 1.01238 1.23140 0.93669 1.03037 0.99839 1.73699 1.16938 1.24017 0.91400 1.84988 1.64531 1.20607 1.25329 0.93247 0.90051 0.93257 0.91486 0.99973 0.94417 0.96807 0.95520 0.90680 0.88203 0.90571 0.92142 0.74180 0.78584 0.84946 0.87902 0.85702 0.86104 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.30 71.98 0.67 -2.82 16 2 C -0.10 -3.51 3.09 -9.40 -0.03 -3.54 16 3 H 0.07 2.44 8.05 -2.39 -0.02 2.42 16 4 C 0.16 7.83 5.36 86.86 0.47 8.30 16 5 N -0.63 -32.94 3.39 -691.95 -2.35 -35.29 16 6 C -0.24 -13.65 10.27 84.04 0.86 -12.78 16 7 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 8 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 9 N -0.95 -57.31 10.09 21.65 0.22 -57.09 16 10 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 C 0.13 5.37 6.25 86.73 0.54 5.91 16 15 C -0.08 -2.37 2.38 -9.60 -0.02 -2.39 16 16 H 0.08 2.37 8.02 -2.39 -0.02 2.35 16 17 C -0.10 -2.16 4.74 30.59 0.14 -2.02 16 18 C 0.12 2.59 5.56 86.38 0.48 3.07 16 19 N -0.70 -12.76 5.55 -466.30 -2.59 -15.35 16 20 C 0.61 13.46 7.82 86.69 0.68 14.14 16 21 O -0.55 -15.88 16.91 -3.98 -0.07 -15.95 16 22 C -0.09 -1.70 7.29 24.39 0.18 -1.52 16 23 C -0.15 -2.53 10.26 22.68 0.23 -2.29 16 24 C 0.04 0.77 6.94 43.55 0.30 1.07 16 25 C -0.11 -1.28 6.33 -11.54 -0.07 -1.36 16 26 C -0.15 -1.08 10.05 30.62 0.31 -0.78 16 27 C -0.16 -1.36 10.24 30.62 0.31 -1.04 16 28 N -0.36 -7.44 12.04 -48.85 -0.59 -8.03 16 29 O 0.12 2.30 11.04 65.78 0.73 3.03 16 30 H 0.05 1.37 8.11 -2.39 -0.02 1.35 16 31 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 3.80 5.87 -2.39 -0.01 3.79 16 34 H -0.02 -0.95 8.04 -2.39 -0.02 -0.97 16 35 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.03 1.06 7.70 -2.39 -0.02 1.04 16 38 H 0.07 1.60 7.95 -2.38 -0.02 1.58 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.54 7.69 -2.39 -0.02 1.52 16 42 H 0.42 5.51 8.30 -92.71 -0.77 4.74 16 43 H 0.20 2.71 7.61 -2.91 -0.02 2.69 16 44 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.10 0.73 7.33 -2.39 -0.02 0.71 16 46 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -73.18 395.34 3.09 -70.09 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.20 Total: 11.61 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.52 Total: -1.58 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.31 Total: -115.75 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.66 Total: -12.92 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -73.18 3.09 -70.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103481848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.437 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds