Wall clock time and date at job start Tue Mar 31 2020 17:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.63730 * 2 1 4 4 C 1.54320 * 110.87343 * 236.75805 * 2 1 3 5 5 N 1.47021 * 107.27315 * 219.37200 * 4 2 1 6 6 C 1.36941 * 125.65234 * 178.98901 * 5 4 2 7 7 H 1.07995 * 119.99862 * 179.97438 * 6 5 4 8 8 C 1.38805 * 119.99614 * 359.96870 * 6 5 4 9 9 N 1.31617 * 120.00578 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99914 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47256 * 60.00163 * 10 8 6 12 12 H 1.48495 * 109.47409 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47091 * 300.00307 * 10 8 6 14 14 C 1.47423 * 108.70259 * 358.93693 * 5 4 2 15 15 C 1.54915 * 104.83106 * 24.12972 * 14 5 4 16 16 H 1.09004 * 111.03505 * 81.07554 * 15 14 5 17 17 C 1.52996 * 111.00419 * 204.91631 * 15 14 5 18 18 C 1.53002 * 109.47062 * 287.19367 * 17 15 14 19 19 N 1.46504 * 109.47012 * 180.02562 * 18 17 15 20 20 C 1.34773 * 119.99872 * 180.02562 * 19 18 17 21 21 O 1.21285 * 120.00077 * 0.02562 * 20 19 18 22 22 C 1.50702 * 119.99948 * 180.02562 * 20 19 18 23 23 O 1.42902 * 109.46993 * 180.02562 * 22 20 19 24 24 C 1.35913 * 116.99826 * 179.97438 * 23 22 20 25 25 C 1.39136 * 120.47526 * 180.24861 * 24 23 22 26 26 C 1.38529 * 118.37790 * 180.26261 * 25 24 23 27 27 C 1.38260 * 119.22068 * 359.75881 * 26 25 24 28 28 N 1.31848 * 120.88276 * 359.96906 * 27 26 25 29 29 C 1.31842 * 121.78210 * 0.02739 * 28 27 26 30 30 H 1.08997 * 109.46966 * 296.85369 * 1 2 3 31 31 H 1.08999 * 109.46912 * 56.85355 * 1 2 3 32 32 H 1.09003 * 109.46573 * 176.85381 * 1 2 3 33 33 H 1.08999 * 109.88374 * 338.78565 * 4 2 1 34 34 H 1.09004 * 109.88672 * 99.95372 * 4 2 1 35 35 H 0.96995 * 120.00820 * 179.97438 * 9 8 6 36 36 H 1.09002 * 110.37275 * 265.29450 * 14 5 4 37 37 H 1.09001 * 110.36903 * 142.96482 * 14 5 4 38 38 H 1.09003 * 109.47145 * 167.19451 * 17 15 14 39 39 H 1.08996 * 109.47276 * 47.19475 * 17 15 14 40 40 H 1.08998 * 109.47127 * 60.00522 * 18 17 15 41 41 H 1.08996 * 109.47163 * 300.00177 * 18 17 15 42 42 H 0.96992 * 120.00098 * 359.97438 * 19 18 17 43 43 H 1.08998 * 109.46878 * 59.99918 * 22 20 19 44 44 H 1.08996 * 109.47095 * 299.99768 * 22 20 19 45 45 H 1.08004 * 120.81191 * 0.02562 * 25 24 23 46 46 H 1.08007 * 120.39570 * 179.72990 * 26 25 24 47 47 H 1.07995 * 119.55605 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.65465 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7904 -1.2060 5 7 3.2495 -1.5469 -0.7355 6 6 4.0127 -2.3915 -1.4967 7 1 4.8557 -2.9026 -1.0557 8 6 3.7028 -2.5906 -2.8350 9 7 2.6757 -1.9673 -3.3725 10 14 4.7435 -3.7432 -3.8732 11 1 4.7036 -5.1078 -3.2889 12 1 4.2084 -3.7814 -5.2579 13 1 6.1462 -3.2563 -3.8983 14 6 3.4653 -1.2447 0.6912 15 6 2.0790 -0.7934 1.2151 16 1 1.4466 -1.6526 1.4386 17 6 2.2237 0.1110 2.4406 18 6 2.6469 -0.7291 3.6473 19 7 2.7848 0.1369 4.8209 20 6 3.1523 -0.3883 6.0064 21 8 3.3692 -1.5778 6.1016 22 6 3.2937 0.5023 7.2138 23 8 3.6901 -0.2821 8.3406 24 6 3.8635 0.3734 9.5185 25 6 4.2540 -0.3188 10.6605 26 6 4.4126 0.3917 11.8391 27 6 4.1844 1.7553 11.8411 28 7 3.8205 2.3822 10.7398 29 6 3.6588 1.7430 9.5980 30 1 -0.3633 0.4642 0.9168 31 1 -0.3633 0.5619 -0.8604 32 1 -0.3632 -1.0262 -0.0564 33 1 1.3191 -1.4772 -1.5771 34 1 2.3776 -0.1013 -1.9964 35 1 2.4594 -2.1061 -4.3078 36 1 4.1930 -0.4408 0.8029 37 1 3.7994 -2.1364 1.2216 38 1 1.2692 0.5937 2.6506 39 1 2.9798 0.8711 2.2439 40 1 3.6013 -1.2117 3.4373 41 1 1.8908 -1.4892 3.8439 42 1 2.6124 1.0883 4.7446 43 1 2.3386 0.9839 7.4238 44 1 4.0489 1.2633 7.0175 45 1 4.4256 -1.3847 10.6297 46 1 4.7105 -0.1137 12.7460 47 1 4.3060 2.3144 12.7570 48 1 3.3594 2.2907 8.7167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103538593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:50 Heat of formation + Delta-G solvation = -18.360069 kcal Electronic energy + Delta-G solvation = -27289.634034 eV Core-core repulsion = 23345.528721 eV Total energy + Delta-G solvation = -3944.105313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16418 -39.93159 -38.44791 -38.02259 -35.36162 -33.29678 -32.89895 -31.52936 -30.85825 -30.65877 -28.96979 -26.67873 -25.63753 -24.32559 -23.94905 -23.32089 -22.04360 -20.97136 -19.80123 -19.25059 -18.86538 -17.81137 -17.20101 -16.92659 -16.82460 -16.51411 -15.81901 -15.53550 -14.98623 -14.87157 -14.42711 -14.28044 -14.12268 -13.73513 -13.59835 -13.52881 -13.12623 -13.03299 -12.65631 -12.59411 -12.37491 -11.97148 -11.90942 -11.71338 -11.40429 -11.22846 -11.10518 -10.78296 -10.74299 -10.24384 -10.20652 -10.06714 -9.91696 -9.89696 -9.84305 -9.65119 -9.50209 -9.27562 -8.96194 -8.57311 -6.79532 -5.68303 -3.01475 0.61812 0.80812 2.10118 2.28074 3.23294 3.32017 3.42499 3.46664 3.47815 3.99444 4.09019 4.28122 4.43769 4.46429 4.51765 4.52405 4.59690 4.83456 4.90939 5.04051 5.05027 5.23577 5.45646 5.46563 5.48139 5.59078 5.62731 5.65437 5.71046 5.88116 5.94255 5.98636 6.05837 6.18539 6.22097 6.24536 6.34303 6.50527 6.63054 6.65181 6.65826 6.78923 7.00466 7.18574 7.45951 7.59744 7.66807 7.86380 7.90538 8.29516 9.25571 9.86000 10.52310 11.43234 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.001700 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.520259 B =16464.828062 C =17287.403094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.064 0.936 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.923 5.923 10 Si 0.911 3.089 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.139 3.861 15 C -0.096 4.096 16 H 0.077 0.923 17 C -0.116 4.116 18 C 0.119 3.881 19 N -0.724 5.724 20 C 0.513 3.487 21 O -0.515 6.515 22 C 0.037 3.963 23 O -0.282 6.282 24 C 0.081 3.919 25 C -0.105 4.105 26 C -0.130 4.130 27 C 0.058 3.942 28 N -0.450 5.450 29 C 0.014 3.986 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.252 0.748 36 H 0.017 0.983 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.401 0.599 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.159 0.841 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 10.413 27.071 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.082 0.918 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.013 3.987 15 C -0.116 4.116 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.003 4.003 19 N -0.377 5.377 20 C 0.296 3.704 21 O -0.389 6.389 22 C -0.042 4.042 23 O -0.193 6.193 24 C 0.033 3.967 25 C -0.132 4.132 26 C -0.150 4.150 27 C -0.100 4.100 28 N -0.159 5.159 29 C -0.144 4.144 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.235 0.765 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.163 0.837 46 H 0.161 0.839 47 H 0.176 0.824 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.702 10.111 26.847 28.739 hybrid contribution 0.559 -0.797 -0.788 1.252 sum -1.143 9.314 26.060 27.698 Atomic orbital electron populations 1.21677 0.95560 1.01572 1.00252 1.22481 0.94936 0.98933 0.97016 0.91801 1.21203 0.89062 0.93085 0.90772 1.44460 1.32381 1.51671 1.04760 1.19026 1.07424 1.17864 0.91291 0.90555 1.24790 0.98445 1.00374 0.96899 1.69951 1.28794 1.45716 1.12584 0.86208 0.79494 0.80588 0.79532 1.21187 1.21616 1.21231 1.21622 0.93251 0.97081 0.86758 1.22337 0.98961 0.97601 0.92679 0.90482 1.21753 1.01519 0.98517 0.93647 1.21562 1.02600 0.93093 0.83067 1.45903 1.70320 1.12405 1.09070 1.19894 0.77958 0.88701 0.83813 1.90792 1.47999 1.15591 1.84505 1.22573 1.02339 0.94115 0.85130 1.86191 1.82882 1.35205 1.15024 1.20136 0.97274 0.92458 0.86822 1.21015 1.00393 1.01573 0.90195 1.22064 0.99228 0.95482 0.98229 1.22705 0.98328 0.92231 0.96705 1.67530 1.09781 1.39959 0.98672 1.22946 1.03392 0.90478 0.97579 0.93844 0.92988 0.92752 0.93455 0.94253 0.93779 0.96562 0.94473 0.91512 0.91209 0.90691 0.91164 0.76482 0.88609 0.88559 0.83674 0.83866 0.82396 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.17 37.16 0.34 -1.65 16 2 C -0.11 -2.00 3.01 -88.79 -0.27 -2.27 16 3 H 0.06 1.06 8.04 -51.93 -0.42 0.65 16 4 C 0.18 4.39 4.97 -3.07 -0.02 4.37 16 5 N -0.61 -15.50 3.39 -170.07 -0.58 -16.08 16 6 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.23 10.31 55.49 0.57 -26.65 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.14 2.81 6.19 -2.53 -0.02 2.79 16 15 C -0.10 -1.54 2.45 -88.47 -0.22 -1.76 16 16 H 0.08 1.28 8.05 -51.93 -0.42 0.87 16 17 C -0.12 -1.33 4.84 -26.73 -0.13 -1.46 16 18 C 0.12 1.38 5.58 -4.04 -0.02 1.36 16 19 N -0.72 -6.45 5.56 -60.29 -0.33 -6.79 16 20 C 0.51 5.60 7.91 -10.99 -0.09 5.51 16 21 O -0.51 -8.32 16.50 -14.36 -0.24 -8.55 16 22 C 0.04 0.27 5.23 36.01 0.19 0.46 16 23 O -0.28 -2.92 9.68 -39.38 -0.38 -3.30 16 24 C 0.08 0.72 6.71 -39.08 -0.26 0.46 16 25 C -0.11 -0.81 10.13 -39.14 -0.40 -1.21 16 26 C -0.13 -0.77 10.11 -39.47 -0.40 -1.17 16 27 C 0.06 0.40 11.18 -17.54 -0.20 0.20 16 28 N -0.45 -4.01 10.36 -13.13 -0.14 -4.15 16 29 C 0.01 0.11 10.22 -17.38 -0.18 -0.07 16 30 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.05 1.26 7.02 -51.93 -0.36 0.89 16 34 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.02 0.33 7.91 -51.93 -0.41 -0.08 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.07 0.77 7.96 -51.93 -0.41 0.36 16 40 H 0.07 1.02 7.75 -51.93 -0.40 0.61 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.40 2.15 8.47 -40.82 -0.35 1.80 16 43 H 0.10 0.42 7.68 -51.93 -0.40 0.03 16 44 H 0.10 0.45 7.68 -51.93 -0.40 0.05 16 45 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 46 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 47 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 48 H 0.16 0.85 6.32 -52.49 -0.33 0.52 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -36.06 393.48 -9.73 -45.78 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.63 Total: -2.16 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.91 Total: -1.35 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.48 Total: -53.67 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.62 Total: -11.86 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.06 -9.73 -45.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103538593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.424 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds