Wall clock time and date at job start Tue Mar 31 2020 17:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.63730 * 2 1 4 4 C 1.54320 * 110.87343 * 236.75805 * 2 1 3 5 5 N 1.47021 * 107.27315 * 219.37200 * 4 2 1 6 6 C 1.36941 * 125.65234 * 178.98901 * 5 4 2 7 7 H 1.07995 * 119.99862 * 179.97438 * 6 5 4 8 8 C 1.38805 * 119.99614 * 359.96870 * 6 5 4 9 9 N 1.31617 * 120.00578 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99914 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47256 * 60.00163 * 10 8 6 12 12 H 1.48495 * 109.47409 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47091 * 300.00307 * 10 8 6 14 14 C 1.47423 * 108.70259 * 358.93693 * 5 4 2 15 15 C 1.54915 * 104.83106 * 24.12972 * 14 5 4 16 16 H 1.09004 * 111.03505 * 81.07554 * 15 14 5 17 17 C 1.52996 * 111.00419 * 204.91631 * 15 14 5 18 18 C 1.53002 * 109.47062 * 287.19367 * 17 15 14 19 19 N 1.46504 * 109.47012 * 180.02562 * 18 17 15 20 20 C 1.34773 * 119.99872 * 180.02562 * 19 18 17 21 21 O 1.21285 * 120.00077 * 0.02562 * 20 19 18 22 22 C 1.50702 * 119.99948 * 180.02562 * 20 19 18 23 23 O 1.42902 * 109.46993 * 180.02562 * 22 20 19 24 24 C 1.35913 * 116.99826 * 179.97438 * 23 22 20 25 25 C 1.39136 * 120.47526 * 180.24861 * 24 23 22 26 26 C 1.38529 * 118.37790 * 180.26261 * 25 24 23 27 27 C 1.38260 * 119.22068 * 359.75881 * 26 25 24 28 28 N 1.31848 * 120.88276 * 359.96906 * 27 26 25 29 29 C 1.31842 * 121.78210 * 0.02739 * 28 27 26 30 30 H 1.08997 * 109.46966 * 296.85369 * 1 2 3 31 31 H 1.08999 * 109.46912 * 56.85355 * 1 2 3 32 32 H 1.09003 * 109.46573 * 176.85381 * 1 2 3 33 33 H 1.08999 * 109.88374 * 338.78565 * 4 2 1 34 34 H 1.09004 * 109.88672 * 99.95372 * 4 2 1 35 35 H 0.96995 * 120.00820 * 179.97438 * 9 8 6 36 36 H 1.09002 * 110.37275 * 265.29450 * 14 5 4 37 37 H 1.09001 * 110.36903 * 142.96482 * 14 5 4 38 38 H 1.09003 * 109.47145 * 167.19451 * 17 15 14 39 39 H 1.08996 * 109.47276 * 47.19475 * 17 15 14 40 40 H 1.08998 * 109.47127 * 60.00522 * 18 17 15 41 41 H 1.08996 * 109.47163 * 300.00177 * 18 17 15 42 42 H 0.96992 * 120.00098 * 359.97438 * 19 18 17 43 43 H 1.08998 * 109.46878 * 59.99918 * 22 20 19 44 44 H 1.08996 * 109.47095 * 299.99768 * 22 20 19 45 45 H 1.08004 * 120.81191 * 0.02562 * 25 24 23 46 46 H 1.08007 * 120.39570 * 179.72990 * 26 25 24 47 47 H 1.07995 * 119.55605 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.65465 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7904 -1.2060 5 7 3.2495 -1.5469 -0.7355 6 6 4.0127 -2.3915 -1.4967 7 1 4.8557 -2.9026 -1.0557 8 6 3.7028 -2.5906 -2.8350 9 7 2.6757 -1.9673 -3.3725 10 14 4.7435 -3.7432 -3.8732 11 1 4.7036 -5.1078 -3.2889 12 1 4.2084 -3.7814 -5.2579 13 1 6.1462 -3.2563 -3.8983 14 6 3.4653 -1.2447 0.6912 15 6 2.0790 -0.7934 1.2151 16 1 1.4466 -1.6526 1.4386 17 6 2.2237 0.1110 2.4406 18 6 2.6469 -0.7291 3.6473 19 7 2.7848 0.1369 4.8209 20 6 3.1523 -0.3883 6.0064 21 8 3.3692 -1.5778 6.1016 22 6 3.2937 0.5023 7.2138 23 8 3.6901 -0.2821 8.3406 24 6 3.8635 0.3734 9.5185 25 6 4.2540 -0.3188 10.6605 26 6 4.4126 0.3917 11.8391 27 6 4.1844 1.7553 11.8411 28 7 3.8205 2.3822 10.7398 29 6 3.6588 1.7430 9.5980 30 1 -0.3633 0.4642 0.9168 31 1 -0.3633 0.5619 -0.8604 32 1 -0.3632 -1.0262 -0.0564 33 1 1.3191 -1.4772 -1.5771 34 1 2.3776 -0.1013 -1.9964 35 1 2.4594 -2.1061 -4.3078 36 1 4.1930 -0.4408 0.8029 37 1 3.7994 -2.1364 1.2216 38 1 1.2692 0.5937 2.6506 39 1 2.9798 0.8711 2.2439 40 1 3.6013 -1.2117 3.4373 41 1 1.8908 -1.4892 3.8439 42 1 2.6124 1.0883 4.7446 43 1 2.3386 0.9839 7.4238 44 1 4.0489 1.2633 7.0175 45 1 4.4256 -1.3847 10.6297 46 1 4.7105 -0.1137 12.7460 47 1 4.3060 2.3144 12.7570 48 1 3.3594 2.2907 8.7167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103538593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:49 Heat of formation + Delta-G solvation = -43.003294 kcal Electronic energy + Delta-G solvation = -27290.702645 eV Core-core repulsion = 23345.528721 eV Total energy + Delta-G solvation = -3945.173924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74239 -40.74214 -39.74446 -38.88642 -36.48071 -35.01899 -33.43751 -32.67044 -32.50336 -31.43441 -29.80745 -28.16446 -27.28461 -25.58070 -24.66248 -23.99336 -23.34794 -21.85087 -21.36516 -20.66850 -19.44042 -18.84637 -18.53012 -17.71162 -17.55666 -17.21837 -16.90821 -16.67760 -16.31549 -15.90942 -15.61673 -15.33060 -15.14755 -15.02286 -14.46779 -14.39804 -14.16986 -14.13253 -13.79144 -13.70814 -13.42082 -13.33746 -13.09886 -12.92902 -12.76687 -12.69422 -12.48487 -12.39149 -12.20242 -11.93414 -11.79669 -11.41312 -11.28325 -11.16496 -10.93520 -10.71045 -10.69446 -10.44763 -10.16236 -9.50406 -8.87769 -7.84964 -5.20088 0.13083 0.26621 1.43257 1.45759 1.46606 1.47700 1.52922 2.48675 2.57450 2.81155 3.32156 3.50393 3.54931 3.66744 3.72203 3.78697 3.96714 3.98710 4.02171 4.05698 4.08248 4.11966 4.28389 4.37048 4.45790 4.53540 4.62794 4.63841 4.75631 4.77176 4.84732 4.97939 5.02412 5.04774 5.14326 5.14925 5.20087 5.29289 5.38112 5.42050 5.47133 5.53918 5.56704 5.76813 5.84980 6.10615 6.21626 6.49891 6.95179 7.11595 7.16830 7.80000 8.44029 9.24652 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.001700 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.520259 B =16464.828062 C =17287.403094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.189 3.811 5 N -0.632 5.632 6 C -0.245 4.245 7 H 0.078 0.922 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.977 3.023 11 H -0.279 1.279 12 H -0.292 1.292 13 H -0.277 1.277 14 C 0.132 3.868 15 C -0.080 4.080 16 H 0.070 0.930 17 C -0.099 4.099 18 C 0.124 3.876 19 N -0.705 5.705 20 C 0.509 3.491 21 O -0.577 6.577 22 C 0.039 3.961 23 O -0.313 6.313 24 C 0.065 3.935 25 C -0.123 4.123 26 C -0.123 4.123 27 C 0.051 3.949 28 N -0.476 5.476 29 C 0.009 3.991 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.009 0.991 34 H -0.001 1.001 35 H 0.246 0.754 36 H 0.026 0.974 37 H 0.030 0.970 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.423 0.577 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.147 0.853 46 H 0.173 0.827 47 H 0.183 0.817 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 12.486 29.530 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.100 0.900 4 C 0.064 3.936 5 N -0.358 5.358 6 C -0.375 4.375 7 H 0.095 0.905 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.805 3.195 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.007 3.993 15 C -0.100 4.100 16 H 0.088 0.912 17 C -0.137 4.137 18 C 0.001 3.999 19 N -0.359 5.359 20 C 0.295 3.705 21 O -0.456 6.456 22 C -0.039 4.039 23 O -0.225 6.225 24 C 0.017 3.983 25 C -0.150 4.150 26 C -0.142 4.142 27 C -0.106 4.106 28 N -0.186 5.186 29 C -0.148 4.148 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.027 0.973 34 H 0.017 0.983 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.261 0.739 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.165 0.835 46 H 0.191 0.809 47 H 0.200 0.800 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.980 12.246 29.337 31.852 hybrid contribution 0.691 -1.450 -1.497 2.195 sum -1.289 10.796 27.840 29.888 Atomic orbital electron populations 1.21637 0.93210 1.01182 1.02412 1.22362 0.96739 0.98698 0.94229 0.89984 1.21010 0.87807 0.91936 0.92812 1.44822 1.32523 1.51460 1.06962 1.19421 1.07786 1.18192 0.92065 0.90460 1.25638 0.99896 1.02282 0.98162 1.70186 1.30282 1.47079 1.12316 0.85178 0.78094 0.78726 0.77497 1.20486 1.21803 1.20340 1.21858 0.96186 0.97120 0.84147 1.22209 0.95656 0.98099 0.94079 0.91177 1.21600 1.03843 0.97435 0.90796 1.21303 1.01008 0.93403 0.84231 1.45657 1.69216 1.13237 1.07788 1.20597 0.76526 0.88325 0.85037 1.90768 1.50869 1.18433 1.85532 1.22737 1.05109 0.93184 0.82839 1.86139 1.83526 1.36790 1.16050 1.20300 0.98356 0.93024 0.86604 1.21314 1.00737 1.02057 0.90856 1.22377 0.97958 0.95263 0.98640 1.23216 0.97405 0.92873 0.97131 1.67576 1.10830 1.40738 0.99468 1.23262 1.03086 0.90228 0.98235 0.89687 0.93005 0.94250 0.97289 0.98301 0.94460 0.95663 0.95141 0.88076 0.89833 0.93192 0.92239 0.73875 0.85194 0.85497 0.83530 0.80910 0.79957 0.80185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.17 71.98 0.66 -2.87 16 2 C -0.10 -3.41 3.01 -9.61 -0.03 -3.44 16 3 H 0.08 2.51 8.04 -2.39 -0.02 2.49 16 4 C 0.19 9.38 4.97 86.73 0.43 9.81 16 5 N -0.63 -33.24 3.39 -691.99 -2.35 -35.59 16 6 C -0.25 -14.27 10.28 84.03 0.86 -13.40 16 7 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 8 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 9 N -0.95 -58.38 10.31 21.65 0.22 -58.16 16 10 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 C 0.13 5.33 6.19 86.86 0.54 5.87 16 15 C -0.08 -2.46 2.45 -9.40 -0.02 -2.48 16 16 H 0.07 2.26 8.05 -2.38 -0.02 2.24 16 17 C -0.10 -1.90 4.84 30.59 0.15 -1.75 16 18 C 0.12 2.65 5.58 86.38 0.48 3.14 16 19 N -0.70 -10.63 5.56 -463.05 -2.57 -13.21 16 20 C 0.51 10.39 7.91 87.66 0.69 11.08 16 21 O -0.58 -18.91 16.50 15.99 0.26 -18.65 16 22 C 0.04 0.47 5.23 71.24 0.37 0.84 16 23 O -0.31 -6.21 9.68 -73.53 -0.71 -6.92 16 24 C 0.06 1.07 6.71 22.60 0.15 1.22 16 25 C -0.12 -1.79 10.13 22.56 0.23 -1.56 16 26 C -0.12 -1.22 10.11 22.34 0.23 -0.99 16 27 C 0.05 0.59 11.18 84.70 0.95 1.54 16 28 N -0.48 -7.58 10.36 -195.44 -2.02 -9.60 16 29 C 0.01 0.13 10.22 84.80 0.87 1.00 16 30 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.01 0.50 7.02 -2.39 -0.02 0.48 16 34 H 0.00 -0.07 7.50 -2.38 -0.02 -0.09 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.03 0.99 7.91 -2.39 -0.02 0.97 16 37 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.38 8.09 -2.39 -0.02 1.36 16 39 H 0.08 1.47 7.96 -2.39 -0.02 1.45 16 40 H 0.05 1.33 7.75 -2.39 -0.02 1.32 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.42 2.67 8.47 -92.71 -0.79 1.89 16 43 H 0.13 0.67 7.68 -2.39 -0.02 0.65 16 44 H 0.13 0.74 7.68 -2.39 -0.02 0.72 16 45 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 47 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 48 H 0.18 1.39 6.32 -2.91 -0.02 1.38 16 Total: -1.00 -84.90 393.48 2.05 -82.85 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.17 Total: 5.65 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 7.02 Total: 4.54 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -6.72 Total: -116.56 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.45 Total: -25.57 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -84.90 2.05 -82.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103538593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.851 kcal (2) G-P(sol) polarization free energy of solvation -84.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds