Wall clock time and date at job start Tue Mar 31 2020 17:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.91390 * 2 1 4 4 C 1.55119 * 111.16455 * 236.06996 * 2 1 3 5 5 N 1.47424 * 104.94264 * 205.13177 * 4 2 1 6 6 C 1.36933 * 125.64823 * 203.96581 * 5 4 2 7 7 H 1.08003 * 120.00052 * 180.02562 * 6 5 4 8 8 C 1.38810 * 120.00212 * 0.04386 * 6 5 4 9 9 N 1.31621 * 119.99778 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00129 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46826 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.46957 * 120.00113 * 10 8 6 13 13 H 1.48498 * 109.46958 * 239.99959 * 10 8 6 14 14 C 1.47028 * 108.70206 * 24.00479 * 5 4 2 15 15 C 1.54325 * 107.27126 * 358.93768 * 14 5 4 16 16 H 1.09006 * 110.71545 * 96.34968 * 15 14 5 17 17 C 1.53000 * 110.71803 * 219.44524 * 15 14 5 18 18 C 1.53003 * 109.46990 * 291.15521 * 17 15 14 19 19 N 1.46499 * 109.46708 * 180.02562 * 18 17 15 20 20 C 1.34784 * 119.99893 * 180.02562 * 19 18 17 21 21 O 1.21610 * 119.99781 * 359.97438 * 20 19 18 22 22 C 1.47398 * 119.99800 * 179.72628 * 20 19 18 23 23 C 1.47097 * 128.56831 * 0.02813 * 22 20 19 24 24 N 1.30008 * 105.33105 * 179.97438 * 23 22 20 25 25 O 1.20658 * 112.30264 * 359.97438 * 24 23 22 26 26 C 1.33495 * 113.15362 * 359.71871 * 25 24 23 27 27 C 1.50697 * 126.82888 * 180.30289 * 26 25 24 28 28 C 1.53001 * 117.49753 * 8.92393 * 27 26 25 29 29 C 1.53000 * 117.50080 * 300.26538 * 27 26 25 30 30 H 1.09004 * 109.47103 * 296.10033 * 1 2 3 31 31 H 1.08999 * 109.46882 * 56.10087 * 1 2 3 32 32 H 1.08990 * 109.46987 * 176.09696 * 1 2 3 33 33 H 1.08995 * 110.41963 * 86.20600 * 4 2 1 34 34 H 1.09004 * 110.20675 * 323.95246 * 4 2 1 35 35 H 0.97003 * 119.99782 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.87970 * 239.52453 * 14 5 4 37 37 H 1.08999 * 110.00768 * 118.42882 * 14 5 4 38 38 H 1.09000 * 109.46641 * 171.15807 * 17 15 14 39 39 H 1.08994 * 109.47288 * 51.16108 * 17 15 14 40 40 H 1.08998 * 109.46692 * 60.00542 * 18 17 15 41 41 H 1.08994 * 109.47584 * 300.00406 * 18 17 15 42 42 H 0.97005 * 120.00261 * 0.02562 * 19 18 17 43 43 H 1.08002 * 127.33656 * 359.97384 * 23 22 20 44 44 H 1.09003 * 115.55021 * 154.58941 * 27 26 25 45 45 H 1.09000 * 117.50015 * 359.97438 * 28 27 26 46 46 H 1.09000 * 117.49909 * 145.02072 * 28 27 26 47 47 H 1.09000 * 117.49943 * 214.98017 * 29 27 26 48 48 H 1.09000 * 117.50079 * 359.97074 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0183 0.0000 4 6 2.0901 -0.8074 -1.2002 5 7 3.4299 -1.2474 -0.7704 6 6 4.4676 -1.5741 -1.6020 7 1 5.4144 -1.8868 -1.1870 8 6 4.3027 -1.5032 -2.9785 9 7 3.1491 -1.1213 -3.4843 10 14 5.7185 -1.9483 -4.1129 11 1 6.8984 -2.3408 -3.3013 12 1 5.3170 -3.0818 -4.9842 13 1 6.0655 -0.7754 -4.9550 14 6 3.4672 -1.2780 0.6991 15 6 2.0861 -0.8078 1.2023 16 1 1.4450 -1.6614 1.4230 17 6 2.2349 0.0877 2.4339 18 6 2.7236 -0.7498 3.6174 19 7 2.8655 0.1077 4.7968 20 6 3.2867 -0.4170 5.9647 21 8 3.5484 -1.6023 6.0395 22 6 3.4352 0.4469 7.1497 23 6 3.1790 1.8903 7.2702 24 7 3.4544 2.1863 8.5058 25 8 3.8173 1.2243 9.1372 26 6 3.8399 0.1012 8.4159 27 6 4.2350 -1.2720 8.8947 28 6 4.4553 -1.4601 10.3971 29 6 5.6524 -1.4483 9.4432 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0252 -0.0699 33 1 2.1644 -0.1733 -2.0836 34 1 1.4548 -1.6696 -1.4033 35 1 3.0338 -1.0721 -4.4461 36 1 4.2434 -0.6056 1.0643 37 1 3.6624 -2.2927 1.0461 38 1 1.2705 0.5334 2.6777 39 1 2.9571 0.8767 2.2243 40 1 3.6880 -1.1954 3.3735 41 1 2.0014 -1.5388 3.8270 42 1 2.6563 1.0530 4.7372 43 1 2.8354 2.5614 6.4969 44 1 3.8022 -2.1054 8.3413 45 1 4.3149 -0.5905 11.0391 46 1 4.1679 -2.4173 10.8319 47 1 6.1521 -2.3977 9.2509 48 1 6.2994 -0.5711 9.4573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103598229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:03 Heat of formation + Delta-G solvation = 65.353481 kcal Electronic energy + Delta-G solvation = -27987.694390 eV Core-core repulsion = 24047.219169 eV Total energy + Delta-G solvation = -3940.475221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.29100 -39.75359 -38.17953 -37.75325 -35.31821 -34.13320 -33.22910 -31.97669 -31.10347 -30.66599 -27.20042 -25.80762 -25.04595 -24.48208 -23.77660 -22.84978 -22.13523 -21.37441 -20.64129 -19.67534 -19.26640 -18.19885 -18.05062 -16.99740 -16.85509 -16.13625 -15.80421 -15.66839 -15.05026 -14.93850 -14.38375 -14.21313 -13.89879 -13.69697 -13.54657 -13.00540 -12.82676 -12.76060 -12.09071 -12.08605 -12.04377 -11.96243 -11.68455 -11.58605 -11.50674 -11.13675 -11.04143 -10.92391 -10.85145 -10.78311 -10.75264 -10.31623 -10.08178 -9.89494 -9.82376 -9.71849 -9.61963 -9.32969 -9.16655 -8.63783 -6.80344 -5.63614 -3.04993 0.67002 1.42128 2.34001 2.95358 2.98106 3.36980 3.40331 3.46029 3.48456 3.80508 3.86693 4.10418 4.35593 4.45279 4.50314 4.66628 4.84990 4.91757 5.07595 5.12585 5.18647 5.26476 5.36434 5.42686 5.46168 5.52385 5.55484 5.63032 5.64862 5.66662 5.76062 5.91303 5.95592 6.12170 6.21650 6.25244 6.29637 6.33470 6.55448 6.61996 6.69733 6.83241 7.02120 7.26567 7.56469 7.66059 7.77186 7.88526 7.97468 8.38663 9.24536 9.85478 10.50781 11.40116 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.002105 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.194143 B =13295.553812 C =14186.774795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.159 3.841 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.117 4.117 18 C 0.119 3.881 19 N -0.719 5.719 20 C 0.596 3.404 21 O -0.531 6.531 22 C -0.258 4.258 23 C 0.024 3.976 24 N -0.353 5.353 25 O 0.091 5.909 26 C 0.081 3.919 27 C -0.092 4.092 28 C -0.167 4.167 29 C -0.154 4.154 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.251 0.749 36 H 0.022 0.978 37 H 0.020 0.980 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.399 0.601 43 H 0.202 0.798 44 H 0.154 0.846 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.111 0.889 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 4.549 25.104 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.348 4.348 7 H 0.095 0.905 8 C -0.209 4.209 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.004 4.004 19 N -0.369 5.369 20 C 0.382 3.618 21 O -0.409 6.409 22 C -0.265 4.265 23 C -0.159 4.159 24 N -0.058 5.058 25 O 0.031 5.969 26 C 0.017 3.983 27 C -0.111 4.111 28 C -0.204 4.204 29 C -0.192 4.192 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.029 0.971 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.233 0.767 43 H 0.219 0.781 44 H 0.172 0.828 45 H 0.122 0.878 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.280 4.780 25.648 26.190 hybrid contribution 0.447 -0.176 -1.414 1.494 sum -1.834 4.604 24.234 24.736 Atomic orbital electron populations 1.21631 0.95744 1.01352 1.00356 1.22669 0.94361 0.99338 0.97115 0.91405 1.22008 0.84105 0.95816 0.94700 1.44508 1.10667 1.78779 0.99181 1.19135 0.91137 1.37268 0.87261 0.90499 1.24787 0.97303 1.02141 0.96623 1.69816 1.22520 1.54009 1.10814 0.86008 0.81186 0.77601 0.80801 1.20539 1.21775 1.21785 1.21371 0.93678 0.97234 0.86381 1.22140 0.98150 0.97621 0.93257 0.90874 1.21798 1.01283 0.98626 0.93793 1.21565 1.02430 0.93246 0.83149 1.45851 1.67967 1.13058 1.10045 1.16749 0.77190 0.86337 0.81532 1.90803 1.50406 1.15314 1.84362 1.22045 1.14350 0.94229 0.95877 1.26395 1.01027 0.93717 0.94745 1.73672 1.15936 1.08666 1.07576 1.84554 1.63284 1.11843 1.37183 1.23784 0.95311 0.89579 0.89641 1.20770 1.02378 0.89530 0.98381 1.23147 1.01955 1.04499 0.90766 1.23119 0.89795 1.04500 1.01742 0.93839 0.92893 0.93001 0.87763 0.97082 0.93848 0.96012 0.96254 0.91547 0.91141 0.90640 0.91195 0.76663 0.78080 0.82845 0.87763 0.87276 0.87061 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.32 37.16 0.35 -1.64 16 2 C -0.12 -2.06 3.10 -88.35 -0.27 -2.34 16 3 H 0.07 1.22 8.05 -51.92 -0.42 0.80 16 4 C 0.16 3.80 5.37 -2.42 -0.01 3.79 16 5 N -0.61 -15.54 3.40 -169.94 -0.58 -16.12 16 6 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 7 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 8 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 9 N -0.92 -26.96 10.09 55.49 0.56 -26.40 16 10 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 C 0.14 2.86 6.11 -3.06 -0.02 2.84 16 15 C -0.09 -1.50 2.42 -88.78 -0.21 -1.71 16 16 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 17 C -0.12 -1.42 4.72 -26.73 -0.13 -1.54 16 18 C 0.12 1.43 5.54 -4.04 -0.02 1.41 16 19 N -0.72 -7.37 5.55 -61.39 -0.34 -7.71 16 20 C 0.60 7.19 7.81 -12.53 -0.10 7.09 16 21 O -0.53 -8.03 15.33 5.27 0.08 -7.94 16 22 C -0.26 -2.66 6.47 -102.90 -0.67 -3.33 16 23 C 0.02 0.21 11.95 -14.73 -0.18 0.03 16 24 N -0.35 -3.64 12.01 31.80 0.38 -3.26 16 25 O 0.09 0.90 10.86 18.65 0.20 1.11 16 26 C 0.08 0.80 7.00 -34.63 -0.24 0.55 16 27 C -0.09 -0.76 5.73 -91.77 -0.53 -1.29 16 28 C -0.17 -0.96 10.19 -26.69 -0.27 -1.23 16 29 C -0.15 -1.01 10.24 -26.69 -0.27 -1.28 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.10 2.83 5.87 -51.93 -0.30 2.53 16 34 H 0.01 0.29 7.99 -51.93 -0.41 -0.13 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.02 0.44 7.73 -51.93 -0.40 0.04 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 40 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.40 2.93 7.84 -40.82 -0.32 2.61 16 43 H 0.20 1.00 7.88 -52.49 -0.41 0.58 16 44 H 0.15 1.44 6.97 -51.93 -0.36 1.08 16 45 H 0.10 0.56 8.02 -51.93 -0.42 0.15 16 46 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -33.06 393.14 -9.24 -42.30 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.62 Total: 0.35 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.83 Total: -5.44 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.02 Total: -53.49 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.28 Total: -6.84 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.06 -9.24 -42.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103598229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.658 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds