Wall clock time and date at job start Tue Mar 31 2020 17:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.91390 * 2 1 4 4 C 1.55119 * 111.16455 * 236.06996 * 2 1 3 5 5 N 1.47424 * 104.94264 * 205.13177 * 4 2 1 6 6 C 1.36933 * 125.64823 * 203.96581 * 5 4 2 7 7 H 1.08003 * 120.00052 * 180.02562 * 6 5 4 8 8 C 1.38810 * 120.00212 * 0.04386 * 6 5 4 9 9 N 1.31621 * 119.99778 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00129 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46826 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.46957 * 120.00113 * 10 8 6 13 13 H 1.48498 * 109.46958 * 239.99959 * 10 8 6 14 14 C 1.47028 * 108.70206 * 24.00479 * 5 4 2 15 15 C 1.54325 * 107.27126 * 358.93768 * 14 5 4 16 16 H 1.09006 * 110.71545 * 96.34968 * 15 14 5 17 17 C 1.53000 * 110.71803 * 219.44524 * 15 14 5 18 18 C 1.53003 * 109.46990 * 291.15521 * 17 15 14 19 19 N 1.46499 * 109.46708 * 180.02562 * 18 17 15 20 20 C 1.34784 * 119.99893 * 180.02562 * 19 18 17 21 21 O 1.21610 * 119.99781 * 359.97438 * 20 19 18 22 22 C 1.47398 * 119.99800 * 179.72628 * 20 19 18 23 23 C 1.47097 * 128.56831 * 0.02813 * 22 20 19 24 24 N 1.30008 * 105.33105 * 179.97438 * 23 22 20 25 25 O 1.20658 * 112.30264 * 359.97438 * 24 23 22 26 26 C 1.33495 * 113.15362 * 359.71871 * 25 24 23 27 27 C 1.50697 * 126.82888 * 180.30289 * 26 25 24 28 28 C 1.53001 * 117.49753 * 8.92393 * 27 26 25 29 29 C 1.53000 * 117.50080 * 300.26538 * 27 26 25 30 30 H 1.09004 * 109.47103 * 296.10033 * 1 2 3 31 31 H 1.08999 * 109.46882 * 56.10087 * 1 2 3 32 32 H 1.08990 * 109.46987 * 176.09696 * 1 2 3 33 33 H 1.08995 * 110.41963 * 86.20600 * 4 2 1 34 34 H 1.09004 * 110.20675 * 323.95246 * 4 2 1 35 35 H 0.97003 * 119.99782 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.87970 * 239.52453 * 14 5 4 37 37 H 1.08999 * 110.00768 * 118.42882 * 14 5 4 38 38 H 1.09000 * 109.46641 * 171.15807 * 17 15 14 39 39 H 1.08994 * 109.47288 * 51.16108 * 17 15 14 40 40 H 1.08998 * 109.46692 * 60.00542 * 18 17 15 41 41 H 1.08994 * 109.47584 * 300.00406 * 18 17 15 42 42 H 0.97005 * 120.00261 * 0.02562 * 19 18 17 43 43 H 1.08002 * 127.33656 * 359.97384 * 23 22 20 44 44 H 1.09003 * 115.55021 * 154.58941 * 27 26 25 45 45 H 1.09000 * 117.50015 * 359.97438 * 28 27 26 46 46 H 1.09000 * 117.49909 * 145.02072 * 28 27 26 47 47 H 1.09000 * 117.49943 * 214.98017 * 29 27 26 48 48 H 1.09000 * 117.50079 * 359.97074 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0183 0.0000 4 6 2.0901 -0.8074 -1.2002 5 7 3.4299 -1.2474 -0.7704 6 6 4.4676 -1.5741 -1.6020 7 1 5.4144 -1.8868 -1.1870 8 6 4.3027 -1.5032 -2.9785 9 7 3.1491 -1.1213 -3.4843 10 14 5.7185 -1.9483 -4.1129 11 1 6.8984 -2.3408 -3.3013 12 1 5.3170 -3.0818 -4.9842 13 1 6.0655 -0.7754 -4.9550 14 6 3.4672 -1.2780 0.6991 15 6 2.0861 -0.8078 1.2023 16 1 1.4450 -1.6614 1.4230 17 6 2.2349 0.0877 2.4339 18 6 2.7236 -0.7498 3.6174 19 7 2.8655 0.1077 4.7968 20 6 3.2867 -0.4170 5.9647 21 8 3.5484 -1.6023 6.0395 22 6 3.4352 0.4469 7.1497 23 6 3.1790 1.8903 7.2702 24 7 3.4544 2.1863 8.5058 25 8 3.8173 1.2243 9.1372 26 6 3.8399 0.1012 8.4159 27 6 4.2350 -1.2720 8.8947 28 6 4.4553 -1.4601 10.3971 29 6 5.6524 -1.4483 9.4432 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0252 -0.0699 33 1 2.1644 -0.1733 -2.0836 34 1 1.4548 -1.6696 -1.4033 35 1 3.0338 -1.0721 -4.4461 36 1 4.2434 -0.6056 1.0643 37 1 3.6624 -2.2927 1.0461 38 1 1.2705 0.5334 2.6777 39 1 2.9571 0.8767 2.2243 40 1 3.6880 -1.1954 3.3735 41 1 2.0014 -1.5388 3.8270 42 1 2.6563 1.0530 4.7372 43 1 2.8354 2.5614 6.4969 44 1 3.8022 -2.1054 8.3413 45 1 4.3149 -0.5905 11.0391 46 1 4.1679 -2.4173 10.8319 47 1 6.1521 -2.3977 9.2509 48 1 6.2994 -0.5711 9.4573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103598229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:02 Heat of formation + Delta-G solvation = 45.280253 kcal Electronic energy + Delta-G solvation = -27988.564831 eV Core-core repulsion = 24047.219169 eV Total energy + Delta-G solvation = -3941.345662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.99989 -40.71807 -39.68290 -38.33458 -36.47919 -35.11188 -34.73435 -32.75431 -32.53032 -32.25726 -28.64348 -27.51532 -26.23137 -25.26816 -24.92951 -23.48856 -23.30578 -22.18514 -21.61160 -21.18656 -20.63671 -19.00285 -18.85693 -18.77890 -17.68783 -17.17087 -16.97787 -16.52408 -16.44612 -15.94180 -15.75462 -15.50546 -14.96794 -14.79600 -14.60314 -14.54507 -14.14775 -13.69594 -13.50260 -13.38842 -13.32809 -12.85120 -12.77741 -12.72831 -12.69900 -12.47417 -12.39509 -12.21357 -12.16368 -11.93089 -11.77464 -11.52095 -11.50464 -11.40994 -11.27534 -11.20592 -10.92596 -10.74183 -10.38433 -10.04198 -8.86685 -7.77218 -5.21562 -0.08693 0.73110 1.44995 1.45799 1.56307 1.60074 2.09128 2.14324 2.48875 2.80964 3.19096 3.21560 3.31423 3.39869 3.72204 3.74407 3.77628 3.93919 3.95238 4.01189 4.08049 4.18164 4.30361 4.37019 4.51457 4.53195 4.64964 4.72478 4.74457 4.77916 4.81374 4.85065 4.93778 5.03258 5.04122 5.08706 5.13925 5.18188 5.21508 5.30080 5.38677 5.42909 5.47170 5.56989 5.78127 5.86909 6.33347 6.45689 7.06093 7.12217 7.12529 7.80424 8.44094 9.24111 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.002105 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.194143 B =13295.553812 C =14186.774795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.630 5.630 6 C -0.238 4.238 7 H 0.076 0.924 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.979 3.021 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.289 1.289 14 C 0.133 3.867 15 C -0.078 4.078 16 H 0.078 0.922 17 C -0.101 4.101 18 C 0.126 3.874 19 N -0.704 5.704 20 C 0.595 3.405 21 O -0.569 6.569 22 C -0.279 4.279 23 C 0.042 3.958 24 N -0.375 5.375 25 O 0.084 5.916 26 C 0.085 3.915 27 C -0.116 4.116 28 C -0.147 4.147 29 C -0.152 4.152 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.068 0.932 34 H -0.018 1.018 35 H 0.246 0.754 36 H 0.026 0.974 37 H 0.011 0.989 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.417 0.583 43 H 0.238 0.762 44 H 0.139 0.861 45 H 0.110 0.890 46 H 0.126 0.874 47 H 0.120 0.880 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 5.851 27.008 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.356 5.356 6 C -0.367 4.367 7 H 0.094 0.906 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.216 1.216 14 C 0.008 3.992 15 C -0.098 4.098 16 H 0.096 0.904 17 C -0.139 4.139 18 C 0.002 3.998 19 N -0.356 5.356 20 C 0.383 3.617 21 O -0.450 6.450 22 C -0.286 4.286 23 C -0.140 4.140 24 N -0.083 5.083 25 O 0.028 5.972 26 C 0.021 3.979 27 C -0.135 4.135 28 C -0.184 4.184 29 C -0.189 4.189 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.000 1.000 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.029 0.971 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.254 0.746 43 H 0.255 0.745 44 H 0.157 0.843 45 H 0.128 0.872 46 H 0.144 0.856 47 H 0.138 0.862 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.675 6.106 27.597 28.391 hybrid contribution 0.595 -0.626 -1.992 2.172 sum -2.080 5.480 25.605 26.267 Atomic orbital electron populations 1.21595 0.92966 1.01503 1.02373 1.22506 0.96495 0.98431 0.94589 0.90972 1.21832 0.83601 0.94787 0.96414 1.44865 1.10662 1.78777 1.01290 1.19478 0.91991 1.37060 0.88174 0.90569 1.25629 0.99810 1.02624 0.98070 1.70080 1.24204 1.54914 1.10612 0.84999 0.78640 0.77009 0.78644 1.19314 1.21931 1.21578 1.21584 0.96744 0.97048 0.83813 1.22044 0.95125 0.98287 0.94299 0.90351 1.21646 1.03301 0.97559 0.91393 1.21341 1.01150 0.93474 0.83791 1.45640 1.67242 1.13763 1.08944 1.16959 0.76557 0.86009 0.82202 1.90786 1.52168 1.17016 1.85019 1.21967 1.16093 0.95103 0.95473 1.26924 0.99140 0.93153 0.94827 1.73664 1.17248 1.08989 1.08388 1.84547 1.63647 1.11804 1.37235 1.24095 0.94122 0.90009 0.89711 1.20780 1.03997 0.88494 1.00269 1.23260 1.00392 1.05570 0.89191 1.23216 0.89259 1.04979 1.01425 0.89948 0.93010 0.93550 0.91406 1.00045 0.94380 0.95607 0.97070 0.88160 0.90664 0.92963 0.91457 0.74622 0.74544 0.84304 0.87187 0.85599 0.86200 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.32 71.98 0.67 -2.78 16 2 C -0.10 -3.47 3.10 -9.33 -0.03 -3.50 16 3 H 0.07 2.45 8.05 -2.38 -0.02 2.43 16 4 C 0.16 7.82 5.37 86.93 0.47 8.28 16 5 N -0.63 -33.12 3.40 -691.56 -2.35 -35.47 16 6 C -0.24 -13.69 10.27 84.03 0.86 -12.83 16 7 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 8 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 9 N -0.95 -57.29 10.09 21.65 0.22 -57.08 16 10 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 14 C 0.13 5.47 6.11 86.73 0.53 6.00 16 15 C -0.08 -2.40 2.42 -9.60 -0.02 -2.42 16 16 H 0.08 2.36 8.04 -2.38 -0.02 2.34 16 17 C -0.10 -2.11 4.72 30.60 0.14 -1.96 16 18 C 0.13 2.79 5.54 86.38 0.48 3.26 16 19 N -0.70 -12.76 5.55 -466.39 -2.59 -15.35 16 20 C 0.60 13.70 7.81 86.65 0.68 14.38 16 21 O -0.57 -17.24 15.33 -4.06 -0.06 -17.31 16 22 C -0.28 -5.39 6.47 -18.75 -0.12 -5.51 16 23 C 0.04 0.63 11.95 87.29 1.04 1.67 16 24 N -0.37 -7.07 12.01 -54.20 -0.65 -7.72 16 25 O 0.08 1.57 10.86 76.97 0.84 2.41 16 26 C 0.08 1.61 7.00 25.48 0.18 1.78 16 27 C -0.12 -1.89 5.73 -11.54 -0.07 -1.95 16 28 C -0.15 -1.49 10.19 30.62 0.31 -1.18 16 29 C -0.15 -1.83 10.24 30.62 0.31 -1.52 16 30 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.31 8.08 -2.39 -0.02 1.30 16 33 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 34 H -0.02 -0.99 7.99 -2.38 -0.02 -1.01 16 35 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.03 1.04 7.73 -2.39 -0.02 1.02 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.57 8.00 -2.39 -0.02 1.55 16 40 H 0.05 1.42 7.58 -2.39 -0.02 1.40 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.42 4.58 7.84 -92.70 -0.73 3.85 16 43 H 0.24 1.39 7.88 -2.91 -0.02 1.37 16 44 H 0.14 2.69 6.97 -2.39 -0.02 2.67 16 45 H 0.11 1.00 8.02 -2.39 -0.02 0.98 16 46 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.45 393.14 3.57 -71.88 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.24 Total: 11.90 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.90 Total: -1.80 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -5.37 Total: -115.62 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.77 Total: -14.90 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -75.45 3.57 -71.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103598229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.158 kcal (2) G-P(sol) polarization free energy of solvation -75.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds