Wall clock time and date at job start Tue Mar 31 2020 17:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.87991 * 2 1 4 4 C 1.54908 * 111.00525 * 236.12591 * 2 1 3 5 5 N 1.47429 * 104.83070 * 204.87278 * 4 2 1 6 6 C 1.36931 * 125.64709 * 204.09032 * 5 4 2 7 7 H 1.08002 * 120.00098 * 180.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 0.02562 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00576 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00326 * 10 8 6 13 13 H 1.48498 * 109.47210 * 150.00037 * 10 8 6 14 14 C 1.47023 * 108.69980 * 24.35768 * 5 4 2 15 15 C 1.54327 * 107.26742 * 358.58082 * 14 5 4 16 16 H 1.09004 * 110.66842 * 96.52852 * 15 14 5 17 17 C 1.52999 * 110.85377 * 219.67414 * 15 14 5 18 18 C 1.52997 * 109.47224 * 288.69638 * 17 15 14 19 19 N 1.46505 * 109.47454 * 179.97438 * 18 17 15 20 20 C 1.34773 * 119.99807 * 180.02562 * 19 18 17 21 21 O 1.21274 * 120.00604 * 359.97438 * 20 19 18 22 22 C 1.50706 * 119.99709 * 180.02562 * 20 19 18 23 23 N 1.46499 * 109.47302 * 179.97438 * 22 20 19 24 24 C 1.35758 * 119.62176 * 89.99823 * 23 22 20 25 25 C 1.35350 * 120.70129 * 180.02562 * 24 23 22 26 26 C 1.40200 * 119.94567 * 359.97438 * 25 24 23 27 27 C 1.36397 * 119.26775 * 359.97438 * 26 25 24 28 28 C 1.34658 * 119.62360 * 269.73278 * 23 22 20 29 29 O 1.22059 * 119.98826 * 359.96952 * 28 23 22 30 30 H 1.09002 * 109.46455 * 182.42202 * 1 2 3 31 31 H 1.08995 * 109.47373 * 302.42062 * 1 2 3 32 32 H 1.08994 * 109.47241 * 62.42693 * 1 2 3 33 33 H 1.09000 * 110.36556 * 86.03492 * 4 2 1 34 34 H 1.08993 * 110.36493 * 323.71151 * 4 2 1 35 35 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.88037 * 118.13318 * 14 5 4 37 37 H 1.08998 * 109.87956 * 239.29392 * 14 5 4 38 38 H 1.09000 * 109.46950 * 48.69331 * 17 15 14 39 39 H 1.08999 * 109.47347 * 168.69304 * 17 15 14 40 40 H 1.08996 * 109.47366 * 299.99914 * 18 17 15 41 41 H 1.08999 * 109.47231 * 59.99595 * 18 17 15 42 42 H 0.96999 * 119.99614 * 359.97438 * 19 18 17 43 43 H 1.08996 * 109.47054 * 300.00379 * 22 20 19 44 44 H 1.08999 * 109.47039 * 59.99752 * 22 20 19 45 45 H 1.07998 * 119.65201 * 0.02562 * 24 23 22 46 46 H 1.08004 * 120.02801 * 179.97438 * 25 24 23 47 47 H 1.08002 * 120.36583 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.34995 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8060 -1.2007 5 7 3.4277 -1.2418 -0.7743 6 6 4.4644 -1.5646 -1.6085 7 1 5.4132 -1.8743 -1.1960 8 6 4.2959 -1.4938 -2.9846 9 7 3.1397 -1.1159 -3.4874 10 14 5.7104 -1.9335 -4.1227 11 1 6.5128 -0.7171 -4.4079 12 1 6.5714 -2.9529 -3.4709 13 1 5.1714 -2.4804 -5.3938 14 6 3.4667 -1.2784 0.6950 15 6 2.0871 -0.8078 1.2018 16 1 1.4466 -1.6617 1.4227 17 6 2.2358 0.0876 2.4335 18 6 2.6668 -0.7607 3.6316 19 7 2.8098 0.0967 4.8110 20 6 3.1845 -0.4368 5.9905 21 8 3.4030 -1.6266 6.0759 22 6 3.3310 0.4452 7.2038 23 7 3.7439 -0.3671 8.3509 24 6 5.0653 -0.5504 8.6025 25 6 5.4711 -1.2970 9.6560 26 6 4.5220 -1.8897 10.5007 27 6 3.1949 -1.7035 10.2469 28 6 2.8084 -0.9188 9.1470 29 8 1.6242 -0.7404 8.9110 30 1 -0.3632 -1.0268 0.0434 31 1 -0.3634 0.5509 0.8674 32 1 -0.3633 0.4757 -0.9109 33 1 2.1553 -0.1711 -2.0839 34 1 1.4524 -1.6701 -1.4027 35 1 3.0221 -1.0660 -4.4490 36 1 3.6618 -2.2953 1.0354 37 1 4.2431 -0.6071 1.0620 38 1 2.9891 0.8509 2.2390 39 1 1.2813 0.5665 2.6520 40 1 1.9135 -1.5240 3.8262 41 1 3.6213 -1.2395 3.4132 42 1 2.6354 1.0485 4.7426 43 1 4.0839 1.2089 7.0090 44 1 2.3764 0.9236 7.4225 45 1 5.8005 -0.0957 7.9552 46 1 6.5252 -1.4361 9.8457 47 1 4.8383 -2.4872 11.3430 48 1 2.4489 -2.1517 10.8865 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103710131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:48 Heat of formation + Delta-G solvation = -15.016006 kcal Electronic energy + Delta-G solvation = -28002.121219 eV Core-core repulsion = 24058.160915 eV Total energy + Delta-G solvation = -3943.960304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77105 -39.65052 -38.16664 -37.15971 -35.43720 -34.80192 -33.29923 -31.38464 -30.70044 -30.23024 -28.91896 -26.70400 -25.63149 -24.39340 -24.00969 -23.08799 -22.02983 -20.95998 -19.73296 -19.25757 -18.06076 -17.70033 -17.63579 -16.86010 -16.68594 -15.87506 -15.81887 -15.42366 -15.16043 -14.77024 -14.52971 -14.39716 -13.95121 -13.83437 -13.61523 -13.03493 -12.87575 -12.80332 -12.61460 -12.25335 -12.20270 -12.09366 -11.99621 -11.67731 -11.50812 -11.13881 -11.04185 -10.88731 -10.82820 -10.74842 -10.25787 -10.15258 -10.04664 -9.89002 -9.81564 -9.71758 -9.33046 -9.24163 -8.63987 -8.29418 -6.80972 -5.64002 -3.05529 0.50426 1.59206 2.10877 2.30414 2.93002 3.39826 3.43503 3.44902 3.47066 4.15857 4.22455 4.37057 4.49697 4.51650 4.67199 4.82634 4.88723 4.93221 5.00692 5.07338 5.25802 5.45241 5.51877 5.54335 5.59924 5.65770 5.71809 5.75149 5.90220 5.95136 5.96213 6.11384 6.15589 6.20870 6.26087 6.28622 6.33528 6.55511 6.62131 6.69036 6.71906 6.83077 7.01615 7.20452 7.56536 7.64843 7.73491 7.88102 7.91903 8.38196 9.23866 9.84848 10.50371 11.39654 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.002041 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.805280 B =13718.535659 C =14802.539444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.221 4.221 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.282 1.282 13 H -0.290 1.290 14 C 0.140 3.860 15 C -0.093 4.093 16 H 0.072 0.928 17 C -0.116 4.116 18 C 0.118 3.882 19 N -0.723 5.723 20 C 0.498 3.502 21 O -0.526 6.526 22 C 0.069 3.931 23 N -0.480 5.480 24 C 0.142 3.858 25 C -0.233 4.233 26 C -0.015 4.015 27 C -0.242 4.242 28 C 0.519 3.481 29 O -0.552 6.552 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.251 0.749 36 H 0.019 0.981 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.401 0.599 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.161 0.839 46 H 0.146 0.854 47 H 0.135 0.865 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 6.847 25.722 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.033 3.967 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.571 5.571 10 Si 0.745 3.255 11 H -0.216 1.216 12 H -0.208 1.208 13 H -0.217 1.217 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.154 4.154 18 C -0.004 4.004 19 N -0.375 5.375 20 C 0.281 3.719 21 O -0.402 6.402 22 C -0.056 4.056 23 N -0.191 5.191 24 C 0.015 3.985 25 C -0.256 4.256 26 C -0.037 4.037 27 C -0.264 4.264 28 C 0.321 3.679 29 O -0.434 6.434 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.029 0.971 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.236 0.764 43 H 0.141 0.859 44 H 0.148 0.852 45 H 0.178 0.822 46 H 0.164 0.836 47 H 0.152 0.848 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.244 6.066 25.362 26.107 hybrid contribution 0.761 0.057 -0.684 1.024 sum 2.004 6.123 24.679 25.506 Atomic orbital electron populations 1.21636 0.95741 1.01173 1.00576 1.22627 0.94384 0.99324 0.97070 0.91385 1.21971 0.84057 0.95887 0.94737 1.44511 1.10524 1.78946 0.99164 1.19081 0.91017 1.37592 0.87237 0.90582 1.24791 0.97277 1.02136 0.96628 1.69809 1.22341 1.53986 1.10993 0.86076 0.81133 0.77943 0.80389 1.21633 1.20764 1.21661 1.21365 0.93665 0.97158 0.86410 1.22151 0.98171 0.97641 0.93279 0.90918 1.21789 1.01547 0.98465 0.93578 1.21549 1.02343 0.93327 0.83229 1.45977 1.69652 1.12402 1.09438 1.20637 0.77645 0.89113 0.84461 1.90776 1.49263 1.15518 1.84605 1.21817 1.05853 0.93562 0.84399 1.45031 1.06819 1.43052 1.24157 1.21937 0.84535 0.95495 0.96503 1.20649 1.01020 1.05294 0.98600 1.21451 0.92684 0.92973 0.96562 1.22093 0.97587 1.06192 1.00536 1.17161 0.85515 0.81373 0.83816 1.90962 1.15962 1.62469 1.73989 0.93074 0.93847 0.92777 0.87739 0.97069 0.93785 0.96331 0.96052 0.91139 0.91486 0.91380 0.90867 0.76449 0.85940 0.85187 0.82161 0.83631 0.84750 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.30 37.16 0.35 -1.70 16 2 C -0.11 -2.08 3.09 -88.47 -0.27 -2.35 16 3 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 4 C 0.16 3.82 5.36 -2.53 -0.01 3.81 16 5 N -0.61 -15.62 3.39 -170.07 -0.58 -16.20 16 6 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 9 N -0.92 -27.00 10.09 55.49 0.56 -26.44 16 10 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.14 2.90 6.24 -3.06 -0.02 2.88 16 15 C -0.09 -1.54 2.39 -88.79 -0.21 -1.75 16 16 H 0.07 1.21 8.01 -51.93 -0.42 0.80 16 17 C -0.12 -1.43 4.73 -26.73 -0.13 -1.56 16 18 C 0.12 1.47 5.56 -4.04 -0.02 1.45 16 19 N -0.72 -7.08 5.56 -60.29 -0.33 -7.41 16 20 C 0.50 5.71 7.90 -10.98 -0.09 5.63 16 21 O -0.53 -8.61 16.43 5.56 0.09 -8.52 16 22 C 0.07 0.53 5.82 -5.19 -0.03 0.50 16 23 N -0.48 -4.59 2.07 -121.07 -0.25 -4.84 16 24 C 0.14 0.96 10.28 -16.84 -0.17 0.78 16 25 C -0.23 -1.40 10.01 -39.87 -0.40 -1.80 16 26 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16 27 C -0.24 -2.38 9.99 -39.38 -0.39 -2.77 16 28 C 0.52 6.51 7.40 -15.45 -0.11 6.40 16 29 O -0.55 -8.94 16.63 4.87 0.08 -8.86 16 30 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 2.85 5.87 -51.93 -0.31 2.54 16 34 H 0.01 0.29 8.04 -51.93 -0.42 -0.12 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.44 7.69 -51.93 -0.40 0.04 16 38 H 0.07 0.86 7.94 -51.93 -0.41 0.44 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 42 H 0.40 2.54 8.47 -40.82 -0.35 2.20 16 43 H 0.12 0.38 8.01 -51.93 -0.42 -0.04 16 44 H 0.13 0.97 7.38 -51.93 -0.38 0.58 16 45 H 0.16 0.55 8.04 -52.49 -0.42 0.13 16 46 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 47 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 48 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -37.97 393.29 -9.38 -47.35 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.68 Total: -0.36 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.17 Total: 2.18 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.60 Total: -54.89 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.17 Total: -17.37 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.97 -9.38 -47.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103710131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.332 kcal (2) G-P(sol) polarization free energy of solvation -37.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds