Wall clock time and date at job start Tue Mar 31 2020 17:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.87991 * 2 1 4 4 C 1.54908 * 111.00525 * 236.12591 * 2 1 3 5 5 N 1.47429 * 104.83070 * 204.87278 * 4 2 1 6 6 C 1.36931 * 125.64709 * 204.09032 * 5 4 2 7 7 H 1.08002 * 120.00098 * 180.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 0.02562 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00576 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00326 * 10 8 6 13 13 H 1.48498 * 109.47210 * 150.00037 * 10 8 6 14 14 C 1.47023 * 108.69980 * 24.35768 * 5 4 2 15 15 C 1.54327 * 107.26742 * 358.58082 * 14 5 4 16 16 H 1.09004 * 110.66842 * 96.52852 * 15 14 5 17 17 C 1.52999 * 110.85377 * 219.67414 * 15 14 5 18 18 C 1.52997 * 109.47224 * 288.69638 * 17 15 14 19 19 N 1.46505 * 109.47454 * 179.97438 * 18 17 15 20 20 C 1.34773 * 119.99807 * 180.02562 * 19 18 17 21 21 O 1.21274 * 120.00604 * 359.97438 * 20 19 18 22 22 C 1.50706 * 119.99709 * 180.02562 * 20 19 18 23 23 N 1.46499 * 109.47302 * 179.97438 * 22 20 19 24 24 C 1.35758 * 119.62176 * 89.99823 * 23 22 20 25 25 C 1.35350 * 120.70129 * 180.02562 * 24 23 22 26 26 C 1.40200 * 119.94567 * 359.97438 * 25 24 23 27 27 C 1.36397 * 119.26775 * 359.97438 * 26 25 24 28 28 C 1.34658 * 119.62360 * 269.73278 * 23 22 20 29 29 O 1.22059 * 119.98826 * 359.96952 * 28 23 22 30 30 H 1.09002 * 109.46455 * 182.42202 * 1 2 3 31 31 H 1.08995 * 109.47373 * 302.42062 * 1 2 3 32 32 H 1.08994 * 109.47241 * 62.42693 * 1 2 3 33 33 H 1.09000 * 110.36556 * 86.03492 * 4 2 1 34 34 H 1.08993 * 110.36493 * 323.71151 * 4 2 1 35 35 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.88037 * 118.13318 * 14 5 4 37 37 H 1.08998 * 109.87956 * 239.29392 * 14 5 4 38 38 H 1.09000 * 109.46950 * 48.69331 * 17 15 14 39 39 H 1.08999 * 109.47347 * 168.69304 * 17 15 14 40 40 H 1.08996 * 109.47366 * 299.99914 * 18 17 15 41 41 H 1.08999 * 109.47231 * 59.99595 * 18 17 15 42 42 H 0.96999 * 119.99614 * 359.97438 * 19 18 17 43 43 H 1.08996 * 109.47054 * 300.00379 * 22 20 19 44 44 H 1.08999 * 109.47039 * 59.99752 * 22 20 19 45 45 H 1.07998 * 119.65201 * 0.02562 * 24 23 22 46 46 H 1.08004 * 120.02801 * 179.97438 * 25 24 23 47 47 H 1.08002 * 120.36583 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.34995 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8060 -1.2007 5 7 3.4277 -1.2418 -0.7743 6 6 4.4644 -1.5646 -1.6085 7 1 5.4132 -1.8743 -1.1960 8 6 4.2959 -1.4938 -2.9846 9 7 3.1397 -1.1159 -3.4874 10 14 5.7104 -1.9335 -4.1227 11 1 6.5128 -0.7171 -4.4079 12 1 6.5714 -2.9529 -3.4709 13 1 5.1714 -2.4804 -5.3938 14 6 3.4667 -1.2784 0.6950 15 6 2.0871 -0.8078 1.2018 16 1 1.4466 -1.6617 1.4227 17 6 2.2358 0.0876 2.4335 18 6 2.6668 -0.7607 3.6316 19 7 2.8098 0.0967 4.8110 20 6 3.1845 -0.4368 5.9905 21 8 3.4030 -1.6266 6.0759 22 6 3.3310 0.4452 7.2038 23 7 3.7439 -0.3671 8.3509 24 6 5.0653 -0.5504 8.6025 25 6 5.4711 -1.2970 9.6560 26 6 4.5220 -1.8897 10.5007 27 6 3.1949 -1.7035 10.2469 28 6 2.8084 -0.9188 9.1470 29 8 1.6242 -0.7404 8.9110 30 1 -0.3632 -1.0268 0.0434 31 1 -0.3634 0.5509 0.8674 32 1 -0.3633 0.4757 -0.9109 33 1 2.1553 -0.1711 -2.0839 34 1 1.4524 -1.6701 -1.4027 35 1 3.0221 -1.0660 -4.4490 36 1 3.6618 -2.2953 1.0354 37 1 4.2431 -0.6071 1.0620 38 1 2.9891 0.8509 2.2390 39 1 1.2813 0.5665 2.6520 40 1 1.9135 -1.5240 3.8262 41 1 3.6213 -1.2395 3.4132 42 1 2.6354 1.0485 4.7426 43 1 4.0839 1.2089 7.0090 44 1 2.3764 0.9236 7.4225 45 1 5.8005 -0.0957 7.9552 46 1 6.5252 -1.4361 9.8457 47 1 4.8383 -2.4872 11.3430 48 1 2.4489 -2.1517 10.8865 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103710131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:47 Heat of formation + Delta-G solvation = -41.315280 kcal Electronic energy + Delta-G solvation = -28003.261641 eV Core-core repulsion = 24058.160915 eV Total energy + Delta-G solvation = -3945.100726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47837 -40.59672 -39.70198 -37.96257 -36.56632 -35.48504 -35.03998 -32.63031 -32.53423 -30.86605 -29.80744 -28.21712 -27.30053 -25.65805 -24.81487 -23.96343 -23.33591 -21.86745 -21.38483 -20.67826 -18.88549 -18.78170 -18.46737 -18.30004 -17.38738 -17.14020 -16.74128 -16.60518 -16.24169 -16.04473 -15.62612 -15.35451 -15.17842 -15.00888 -14.75538 -14.59906 -14.19081 -13.74522 -13.64150 -13.38690 -13.36600 -13.17943 -12.99321 -12.88567 -12.77491 -12.74805 -12.71314 -12.43017 -12.20262 -11.96931 -11.79846 -11.60362 -11.42549 -11.27414 -11.12272 -11.04137 -10.78459 -10.71747 -10.19092 -8.97193 -8.88202 -7.77759 -5.22537 -0.08769 0.93918 1.44148 1.44615 1.46796 1.47901 1.55496 2.15011 2.48566 2.74776 3.30709 3.59094 3.69025 3.70472 3.73915 3.78679 3.90438 4.05328 4.06027 4.17021 4.22884 4.25544 4.32543 4.38570 4.50302 4.53232 4.61764 4.71321 4.77801 4.82534 5.00065 5.00790 5.05115 5.10699 5.17343 5.18532 5.26816 5.35892 5.39846 5.40118 5.44978 5.54069 5.64981 5.75676 5.85116 6.05195 6.31907 6.42941 6.95663 7.10948 7.12488 7.79028 8.43150 9.23537 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.002041 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.805280 B =13718.535659 C =14802.539444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.075 0.925 4 C 0.159 3.841 5 N -0.630 5.630 6 C -0.240 4.240 7 H 0.078 0.922 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.981 3.019 11 H -0.282 1.282 12 H -0.273 1.273 13 H -0.294 1.294 14 C 0.135 3.865 15 C -0.080 4.080 16 H 0.071 0.929 17 C -0.099 4.099 18 C 0.126 3.874 19 N -0.707 5.707 20 C 0.494 3.506 21 O -0.582 6.582 22 C 0.072 3.928 23 N -0.482 5.482 24 C 0.134 3.866 25 C -0.233 4.233 26 C 0.006 3.994 27 C -0.286 4.286 28 C 0.498 3.502 29 O -0.612 6.612 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.070 0.930 34 H -0.021 1.021 35 H 0.247 0.753 36 H 0.008 0.992 37 H 0.031 0.969 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.422 0.578 43 H 0.179 0.821 44 H 0.132 0.868 45 H 0.200 0.800 46 H 0.182 0.818 47 H 0.167 0.833 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 8.629 27.510 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.094 0.906 4 C 0.034 3.966 5 N -0.356 5.356 6 C -0.369 4.369 7 H 0.095 0.905 8 C -0.262 4.262 9 N -0.598 5.598 10 Si 0.809 3.191 11 H -0.208 1.208 12 H -0.198 1.198 13 H -0.220 1.220 14 C 0.010 3.990 15 C -0.100 4.100 16 H 0.089 0.911 17 C -0.137 4.137 18 C 0.002 3.998 19 N -0.360 5.360 20 C 0.280 3.720 21 O -0.462 6.462 22 C -0.053 4.053 23 N -0.191 5.191 24 C 0.008 3.992 25 C -0.255 4.255 26 C -0.015 4.015 27 C -0.307 4.307 28 C 0.303 3.697 29 O -0.499 6.499 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.088 0.912 34 H -0.003 1.003 35 H 0.056 0.944 36 H 0.026 0.974 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.260 0.740 43 H 0.196 0.804 44 H 0.150 0.850 45 H 0.217 0.783 46 H 0.199 0.801 47 H 0.184 0.816 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.194 7.900 27.178 28.483 hybrid contribution 0.294 -0.547 -1.226 1.374 sum 3.487 7.353 25.952 27.198 Atomic orbital electron populations 1.21602 0.93187 1.01515 1.02228 1.22468 0.96361 0.98580 0.94524 0.90625 1.21790 0.83579 0.94774 0.96453 1.44869 1.10501 1.78962 1.01243 1.19449 0.91886 1.37419 0.88140 0.90459 1.25657 0.99830 1.02571 0.98121 1.70078 1.24094 1.54897 1.10762 0.85043 0.78253 0.77890 0.77942 1.20835 1.19769 1.22030 1.21565 0.96646 0.96917 0.83892 1.22054 0.95270 0.98169 0.94488 0.91054 1.21629 1.03530 0.97481 0.91029 1.21265 1.00798 0.93448 0.84328 1.45771 1.68723 1.13202 1.08291 1.21323 0.76337 0.88796 0.85543 1.90753 1.51839 1.18072 1.85524 1.22057 1.07991 0.93278 0.81954 1.45099 1.07577 1.42532 1.23896 1.22729 0.83839 0.95367 0.97246 1.21194 1.02568 1.03992 0.97726 1.21885 0.91467 0.91357 0.96831 1.22121 0.99210 1.08247 1.01159 1.17609 0.85349 0.81867 0.84863 1.90902 1.18103 1.65144 1.75798 0.93630 0.90115 0.92993 0.91216 1.00272 0.94364 0.97431 0.95111 0.89981 0.88555 0.93020 0.92861 0.74010 0.80403 0.85040 0.78300 0.80113 0.81578 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.30 71.98 0.67 -2.98 16 2 C -0.10 -3.52 3.09 -9.40 -0.03 -3.54 16 3 H 0.08 2.58 8.05 -2.39 -0.02 2.56 16 4 C 0.16 7.92 5.36 86.85 0.47 8.39 16 5 N -0.63 -33.25 3.39 -691.99 -2.35 -35.60 16 6 C -0.24 -13.79 10.27 84.03 0.86 -12.92 16 7 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 8 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 9 N -0.95 -57.39 10.09 21.65 0.22 -57.17 16 10 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 14 C 0.13 5.60 6.24 86.73 0.54 6.14 16 15 C -0.08 -2.56 2.39 -9.61 -0.02 -2.59 16 16 H 0.07 2.31 8.01 -2.39 -0.02 2.29 16 17 C -0.10 -2.14 4.73 30.59 0.14 -2.00 16 18 C 0.13 2.93 5.56 86.38 0.48 3.41 16 19 N -0.71 -12.13 5.56 -463.07 -2.57 -14.70 16 20 C 0.49 10.61 7.90 87.66 0.69 11.30 16 21 O -0.58 -19.04 16.43 -3.01 -0.05 -19.09 16 22 C 0.07 0.93 5.82 85.63 0.50 1.43 16 23 N -0.48 -8.50 2.07 -655.07 -1.36 -9.86 16 24 C 0.13 1.37 10.28 83.42 0.86 2.23 16 25 C -0.23 -2.00 10.01 22.08 0.22 -1.78 16 26 C 0.01 0.07 10.10 22.32 0.23 0.30 16 27 C -0.29 -5.73 9.99 22.40 0.22 -5.51 16 28 C 0.50 12.82 7.40 84.82 0.63 13.45 16 29 O -0.61 -21.06 16.63 -5.51 -0.09 -21.15 16 30 H 0.04 1.35 8.11 -2.39 -0.02 1.33 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 3.96 5.87 -2.39 -0.01 3.95 16 34 H -0.02 -1.13 8.04 -2.39 -0.02 -1.15 16 35 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.03 1.22 7.69 -2.39 -0.02 1.20 16 38 H 0.08 1.67 7.94 -2.39 -0.02 1.65 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.47 7.68 -2.39 -0.02 1.45 16 42 H 0.42 3.74 8.47 -92.71 -0.79 2.96 16 43 H 0.18 0.23 8.01 -2.39 -0.02 0.21 16 44 H 0.13 1.75 7.38 -2.39 -0.02 1.73 16 45 H 0.20 0.37 8.04 -2.91 -0.02 0.35 16 46 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 47 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 48 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -90.66 393.29 2.92 -87.75 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.17 Total: 9.71 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 6.92 Total: 11.79 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -6.06 Total: -117.33 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -0.14 Total: -40.24 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -90.66 2.92 -87.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103710131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.432 kcal (2) G-P(sol) polarization free energy of solvation -90.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds