Wall clock time and date at job start Tue Mar 31 2020 17:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.37196 * 2 1 4 4 C 1.54006 * 110.32482 * 237.81263 * 2 1 3 5 5 N 1.47480 * 107.24550 * 242.31763 * 4 2 1 6 6 C 1.34784 * 127.03402 * 154.61262 * 5 4 2 7 7 O 1.21471 * 120.00151 * 175.69874 * 6 5 4 8 8 C 1.48455 * 119.99525 * 355.69528 * 6 5 4 9 9 C 1.41151 * 120.54029 * 29.00265 * 8 6 5 10 10 C 1.35265 * 119.86846 * 179.97438 * 9 8 6 11 11 N 1.35703 * 121.00315 * 359.96522 * 10 9 8 12 12 C 1.46490 * 119.44510 * 180.02562 * 11 10 9 13 13 C 1.34606 * 121.11349 * 0.02562 * 11 10 9 14 14 O 1.22017 * 119.95722 * 180.02562 * 13 11 10 15 15 C 1.38295 * 120.53626 * 208.71266 * 8 6 5 16 16 C 1.48387 * 105.79588 * 334.78264 * 5 4 2 17 17 C 1.54616 * 110.32899 * 122.19066 * 2 1 3 18 18 H 1.08999 * 110.73747 * 22.40300 * 17 2 1 19 19 C 1.52994 * 110.73987 * 259.25736 * 17 2 1 20 20 C 1.53003 * 109.47044 * 174.99829 * 19 17 2 21 21 N 1.46506 * 109.46789 * 179.97438 * 20 19 17 22 22 C 1.36937 * 119.99709 * 180.02562 * 21 20 19 23 23 H 1.08005 * 120.00075 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00116 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99755 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99983 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47113 * 90.00239 * 26 24 22 28 28 H 1.48507 * 109.46870 * 209.99939 * 26 24 22 29 29 H 1.48502 * 109.47152 * 330.00000 * 26 24 22 30 30 H 1.08994 * 109.47350 * 180.73905 * 1 2 3 31 31 H 1.09009 * 109.47092 * 300.73604 * 1 2 3 32 32 H 1.08998 * 109.47368 * 60.73086 * 1 2 3 33 33 H 1.08997 * 109.90860 * 1.77221 * 4 2 1 34 34 H 1.08998 * 109.91602 * 122.85756 * 4 2 1 35 35 H 1.08001 * 120.06656 * 359.94597 * 9 8 6 36 36 H 1.07998 * 119.50079 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.47315 * 90.00247 * 12 11 10 38 38 H 1.08996 * 109.47494 * 210.00220 * 12 11 10 39 39 H 1.09004 * 109.47299 * 329.99964 * 12 11 10 40 40 H 1.08000 * 120.49228 * 0.02710 * 15 8 6 41 41 H 1.09004 * 110.51370 * 280.62634 * 16 5 4 42 42 H 1.08998 * 110.83167 * 157.65992 * 16 5 4 43 43 H 1.08996 * 109.47433 * 295.00284 * 19 17 2 44 44 H 1.09000 * 109.47481 * 55.00304 * 19 17 2 45 45 H 1.08993 * 109.47162 * 300.00015 * 20 19 17 46 46 H 1.09004 * 109.46865 * 60.00354 * 20 19 17 47 47 H 0.96992 * 120.00602 * 359.97438 * 21 20 19 48 48 H 0.96997 * 119.99547 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0649 -0.7693 -1.2222 5 7 2.8304 -1.9222 -0.7124 6 6 3.0656 -3.0863 -1.3498 7 8 3.7816 -3.9244 -0.8394 8 6 2.4495 -3.3442 -2.6757 9 6 2.1520 -2.2754 -3.5484 10 6 1.5911 -2.5260 -4.7535 11 7 1.3077 -3.7948 -5.1424 12 6 0.7009 -4.0271 -6.4553 13 6 1.5748 -4.8437 -4.3421 14 8 1.3117 -5.9758 -4.7132 15 6 2.1633 -4.6359 -3.0782 16 6 3.2835 -1.5370 0.6470 17 6 2.0671 -0.7724 1.2270 18 1 1.3175 -1.4684 1.6034 19 6 2.5055 0.1959 2.3274 20 6 2.9136 -0.5963 3.5711 21 7 3.3339 0.3310 4.6246 22 6 3.7461 -0.1524 5.8376 23 1 3.7610 -1.2172 6.0179 24 6 4.1449 0.7261 6.8357 25 7 4.1272 2.0237 6.6159 26 14 4.7065 0.0667 8.4908 27 1 6.1722 -0.1700 8.4578 28 1 4.3886 1.0562 9.5516 29 1 4.0052 -1.2102 8.7787 30 1 -0.3634 -1.0275 0.0133 31 1 -0.3634 0.5253 0.8834 32 1 -0.3634 0.5024 -0.8964 33 1 1.2333 -1.1174 -1.8348 34 1 2.7153 -0.1233 -1.8120 35 1 2.3712 -1.2596 -3.2543 36 1 1.3656 -1.7038 -5.4164 37 1 1.4857 -4.1655 -7.1990 38 1 0.0774 -4.9202 -6.4145 39 1 0.0880 -3.1684 -6.7293 40 1 2.3842 -5.4729 -2.4323 41 1 4.1553 -0.8852 0.5887 42 1 3.5044 -2.4199 1.2467 43 1 3.3533 0.7845 1.9770 44 1 1.6790 0.8618 2.5759 45 1 2.0657 -1.1848 3.9215 46 1 3.7402 -1.2621 3.3226 47 1 3.3209 1.2872 4.4626 48 1 4.4055 2.6375 7.3134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104360347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:13 Heat of formation + Delta-G solvation = -16.818222 kcal Electronic energy + Delta-G solvation = -28216.007731 eV Core-core repulsion = 24271.969277 eV Total energy + Delta-G solvation = -3944.038454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83083 -40.33693 -38.27481 -37.31538 -35.27712 -34.88776 -33.27241 -32.10529 -30.52659 -30.23986 -28.67490 -27.10424 -26.77288 -24.93758 -24.03967 -23.49613 -22.41781 -20.82627 -20.14915 -20.02616 -18.22204 -17.71463 -17.40599 -17.09575 -16.57831 -16.13825 -16.02442 -15.52171 -14.88158 -14.70992 -14.56544 -14.39111 -13.84750 -13.80589 -13.68300 -13.41985 -13.29287 -13.17021 -13.08704 -13.00925 -12.59955 -12.31546 -12.30145 -12.02883 -11.75855 -11.41567 -11.20081 -11.03880 -10.82270 -10.73307 -10.65389 -10.51546 -10.45021 -10.30569 -10.05528 -9.97340 -9.65875 -8.93301 -8.85314 -8.44560 -6.90533 -5.75306 -3.03643 0.06190 1.21299 2.11839 2.47168 2.61383 3.25006 3.45442 3.50625 3.52211 3.90052 4.02649 4.14769 4.29479 4.46082 4.59182 4.61409 4.63432 4.67862 4.70488 4.85494 4.97273 5.07048 5.13981 5.22935 5.25579 5.30631 5.43360 5.49281 5.50259 5.58335 5.68001 5.69761 5.73582 5.79222 5.82577 5.93045 5.97167 6.02627 6.12050 6.25909 6.36618 6.39933 6.52142 6.84573 6.88224 7.24928 7.51576 7.72361 7.82771 8.44091 9.55140 10.13198 10.47606 11.47699 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.002043 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.549851 B =13701.931732 C =14422.847522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.090 0.910 4 C 0.095 3.905 5 N -0.612 5.612 6 C 0.570 3.430 7 O -0.522 6.522 8 C -0.024 4.024 9 C -0.223 4.223 10 C 0.131 3.869 11 N -0.497 5.497 12 C 0.057 3.943 13 C 0.513 3.487 14 O -0.543 6.543 15 C -0.174 4.174 16 C 0.109 3.891 17 C -0.091 4.091 18 H 0.085 0.915 19 C -0.114 4.114 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.161 0.839 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.720 -3.314 -29.799 31.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.109 0.891 4 C -0.028 4.028 5 N -0.345 5.345 6 C 0.358 3.642 7 O -0.398 6.398 8 C -0.031 4.031 9 C -0.246 4.246 10 C 0.004 3.996 11 N -0.209 5.209 12 C -0.084 4.084 13 C 0.314 3.686 14 O -0.425 6.425 15 C -0.198 4.198 16 C -0.012 4.012 17 C -0.111 4.111 18 H 0.103 0.897 19 C -0.152 4.152 20 C 0.023 3.977 21 N -0.378 5.378 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.179 0.821 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.461 -4.725 -29.718 31.543 hybrid contribution 0.372 0.257 0.905 1.012 sum -9.089 -4.468 -28.813 30.541 Atomic orbital electron populations 1.21843 0.93985 1.02020 1.02174 1.22201 0.96534 0.99879 0.93726 0.89120 1.22607 0.95699 0.87240 0.97243 1.48736 1.53005 1.14392 1.18352 1.17925 0.81236 0.80652 0.84366 1.90831 1.37428 1.44690 1.66891 1.20413 0.94700 0.94010 0.93934 1.21099 1.08442 1.00549 0.94504 1.21871 0.94694 0.86690 0.96313 1.45413 1.50612 1.06909 1.17924 1.22211 0.99626 1.04681 0.81911 1.17055 0.81403 0.84375 0.85730 1.90979 1.55149 1.21010 1.75331 1.22688 1.03060 0.97631 0.96383 1.22765 0.97131 1.00171 0.81138 1.22355 0.96865 0.97379 0.94503 0.89703 1.21719 1.01357 0.97606 0.94554 1.20687 0.96460 0.92834 0.87697 1.42359 1.79206 1.05124 1.11120 1.19249 1.35638 0.92152 0.89886 0.91191 1.24744 1.02504 0.95339 0.98553 1.69659 1.54387 1.00692 1.33624 0.86184 0.78503 0.77624 0.83873 1.21713 1.21779 1.20756 0.92603 0.91738 0.92583 0.89850 0.90972 0.82412 0.81432 0.90372 0.88631 0.89425 0.82141 0.90194 0.89250 0.91561 0.91308 0.96452 0.96308 0.78343 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.89 37.16 0.33 -0.71 16 2 C -0.10 -0.85 3.17 -89.25 -0.28 -1.13 16 3 H 0.09 0.70 7.85 -51.93 -0.41 0.29 16 4 C 0.09 0.68 4.79 -2.98 -0.01 0.66 16 5 N -0.61 -6.61 3.30 -170.43 -0.56 -7.17 16 6 C 0.57 7.23 7.70 -12.05 -0.09 7.14 16 7 O -0.52 -8.76 16.99 5.39 0.09 -8.67 16 8 C -0.02 -0.24 5.72 -104.56 -0.60 -0.83 16 9 C -0.22 -1.34 7.95 -39.54 -0.31 -1.65 16 10 C 0.13 0.55 10.25 -16.90 -0.17 0.37 16 11 N -0.50 -3.36 2.98 -127.14 -0.38 -3.74 16 12 C 0.06 0.21 10.34 59.84 0.62 0.83 16 13 C 0.51 5.64 7.42 -15.31 -0.11 5.53 16 14 O -0.54 -7.81 16.62 4.90 0.08 -7.73 16 15 C -0.17 -1.96 9.61 -38.53 -0.37 -2.33 16 16 C 0.11 1.33 5.94 -1.98 -0.01 1.32 16 17 C -0.09 -1.03 2.58 -88.75 -0.23 -1.26 16 18 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 19 C -0.11 -1.64 4.71 -26.73 -0.13 -1.77 16 20 C 0.15 2.95 6.15 -4.04 -0.02 2.92 16 21 N -0.73 -18.57 5.60 -59.90 -0.34 -18.91 16 22 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 23 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 24 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 25 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 26 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.05 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.47 5.71 -51.93 -0.30 0.18 16 34 H 0.07 0.39 7.43 -51.93 -0.39 0.00 16 35 H 0.16 0.63 4.93 -52.49 -0.26 0.37 16 36 H 0.17 -0.04 8.02 -52.49 -0.42 -0.46 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 0.51 7.37 -51.93 -0.38 0.12 16 39 H 0.09 0.04 8.00 -51.93 -0.42 -0.38 16 40 H 0.16 1.96 7.94 -52.49 -0.42 1.54 16 41 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 42 H 0.09 1.27 7.89 -51.93 -0.41 0.86 16 43 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.38 7.67 -51.93 -0.40 -0.02 16 47 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -37.33 389.41 -8.61 -45.93 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.42 Total: 2.75 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.65 Total: 1.64 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.55 Total: -57.43 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.17 Total: -16.40 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.33 -8.61 -45.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104360347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.114 kcal (2) G-P(sol) polarization free energy of solvation -37.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds