Wall clock time and date at job start Tue Mar 31 2020 17:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.37196 * 2 1 4 4 C 1.54006 * 110.32482 * 237.81263 * 2 1 3 5 5 N 1.47480 * 107.24550 * 242.31763 * 4 2 1 6 6 C 1.34784 * 127.03402 * 154.61262 * 5 4 2 7 7 O 1.21471 * 120.00151 * 175.69874 * 6 5 4 8 8 C 1.48455 * 119.99525 * 355.69528 * 6 5 4 9 9 C 1.41151 * 120.54029 * 29.00265 * 8 6 5 10 10 C 1.35265 * 119.86846 * 179.97438 * 9 8 6 11 11 N 1.35703 * 121.00315 * 359.96522 * 10 9 8 12 12 C 1.46490 * 119.44510 * 180.02562 * 11 10 9 13 13 C 1.34606 * 121.11349 * 0.02562 * 11 10 9 14 14 O 1.22017 * 119.95722 * 180.02562 * 13 11 10 15 15 C 1.38295 * 120.53626 * 208.71266 * 8 6 5 16 16 C 1.48387 * 105.79588 * 334.78264 * 5 4 2 17 17 C 1.54616 * 110.32899 * 122.19066 * 2 1 3 18 18 H 1.08999 * 110.73747 * 22.40300 * 17 2 1 19 19 C 1.52994 * 110.73987 * 259.25736 * 17 2 1 20 20 C 1.53003 * 109.47044 * 174.99829 * 19 17 2 21 21 N 1.46506 * 109.46789 * 179.97438 * 20 19 17 22 22 C 1.36937 * 119.99709 * 180.02562 * 21 20 19 23 23 H 1.08005 * 120.00075 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00116 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99755 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99983 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47113 * 90.00239 * 26 24 22 28 28 H 1.48507 * 109.46870 * 209.99939 * 26 24 22 29 29 H 1.48502 * 109.47152 * 330.00000 * 26 24 22 30 30 H 1.08994 * 109.47350 * 180.73905 * 1 2 3 31 31 H 1.09009 * 109.47092 * 300.73604 * 1 2 3 32 32 H 1.08998 * 109.47368 * 60.73086 * 1 2 3 33 33 H 1.08997 * 109.90860 * 1.77221 * 4 2 1 34 34 H 1.08998 * 109.91602 * 122.85756 * 4 2 1 35 35 H 1.08001 * 120.06656 * 359.94597 * 9 8 6 36 36 H 1.07998 * 119.50079 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.47315 * 90.00247 * 12 11 10 38 38 H 1.08996 * 109.47494 * 210.00220 * 12 11 10 39 39 H 1.09004 * 109.47299 * 329.99964 * 12 11 10 40 40 H 1.08000 * 120.49228 * 0.02710 * 15 8 6 41 41 H 1.09004 * 110.51370 * 280.62634 * 16 5 4 42 42 H 1.08998 * 110.83167 * 157.65992 * 16 5 4 43 43 H 1.08996 * 109.47433 * 295.00284 * 19 17 2 44 44 H 1.09000 * 109.47481 * 55.00304 * 19 17 2 45 45 H 1.08993 * 109.47162 * 300.00015 * 20 19 17 46 46 H 1.09004 * 109.46865 * 60.00354 * 20 19 17 47 47 H 0.96992 * 120.00602 * 359.97438 * 21 20 19 48 48 H 0.96997 * 119.99547 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0649 -0.7693 -1.2222 5 7 2.8304 -1.9222 -0.7124 6 6 3.0656 -3.0863 -1.3498 7 8 3.7816 -3.9244 -0.8394 8 6 2.4495 -3.3442 -2.6757 9 6 2.1520 -2.2754 -3.5484 10 6 1.5911 -2.5260 -4.7535 11 7 1.3077 -3.7948 -5.1424 12 6 0.7009 -4.0271 -6.4553 13 6 1.5748 -4.8437 -4.3421 14 8 1.3117 -5.9758 -4.7132 15 6 2.1633 -4.6359 -3.0782 16 6 3.2835 -1.5370 0.6470 17 6 2.0671 -0.7724 1.2270 18 1 1.3175 -1.4684 1.6034 19 6 2.5055 0.1959 2.3274 20 6 2.9136 -0.5963 3.5711 21 7 3.3339 0.3310 4.6246 22 6 3.7461 -0.1524 5.8376 23 1 3.7610 -1.2172 6.0179 24 6 4.1449 0.7261 6.8357 25 7 4.1272 2.0237 6.6159 26 14 4.7065 0.0667 8.4908 27 1 6.1722 -0.1700 8.4578 28 1 4.3886 1.0562 9.5516 29 1 4.0052 -1.2102 8.7787 30 1 -0.3634 -1.0275 0.0133 31 1 -0.3634 0.5253 0.8834 32 1 -0.3634 0.5024 -0.8964 33 1 1.2333 -1.1174 -1.8348 34 1 2.7153 -0.1233 -1.8120 35 1 2.3712 -1.2596 -3.2543 36 1 1.3656 -1.7038 -5.4164 37 1 1.4857 -4.1655 -7.1990 38 1 0.0774 -4.9202 -6.4145 39 1 0.0880 -3.1684 -6.7293 40 1 2.3842 -5.4729 -2.4323 41 1 4.1553 -0.8852 0.5887 42 1 3.5044 -2.4199 1.2467 43 1 3.3533 0.7845 1.9770 44 1 1.6790 0.8618 2.5759 45 1 2.0657 -1.1848 3.9215 46 1 3.7402 -1.2621 3.3226 47 1 3.3209 1.2872 4.4626 48 1 4.4055 2.6375 7.3134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104360347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:12 Heat of formation + Delta-G solvation = -43.126046 kcal Electronic energy + Delta-G solvation = -28217.148524 eV Core-core repulsion = 24271.969277 eV Total energy + Delta-G solvation = -3945.179247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.50597 -41.22454 -39.26454 -38.08157 -36.89513 -35.68008 -34.54165 -33.42046 -31.85260 -31.03626 -29.53322 -28.16602 -27.44841 -26.18252 -24.95241 -24.51747 -23.69281 -22.07226 -21.06366 -20.82428 -19.19259 -18.89670 -18.33308 -18.11833 -17.25840 -17.00623 -16.90706 -16.67043 -16.30015 -15.92840 -15.44503 -15.30021 -15.14062 -15.05146 -14.67119 -14.39717 -14.26010 -14.25069 -13.89278 -13.57166 -13.43702 -13.17851 -13.13207 -12.92262 -12.86314 -12.68355 -12.63640 -12.39168 -12.26062 -12.10994 -11.90337 -11.68126 -11.52013 -11.46465 -11.23652 -11.17925 -10.95115 -10.93146 -9.82478 -9.07938 -9.00729 -7.97027 -5.25402 -0.65072 0.62623 1.46056 1.47603 1.50680 1.56119 1.62688 1.74268 2.53660 2.54685 3.15437 3.36295 3.52446 3.59310 3.68398 3.71823 3.77712 4.05173 4.13017 4.14358 4.26376 4.31551 4.42356 4.47866 4.48781 4.51986 4.59612 4.65482 4.69697 4.70746 4.81437 4.83911 4.88796 4.91629 4.94960 4.99087 5.10154 5.11934 5.22635 5.32812 5.39040 5.44219 5.45599 5.48843 5.59070 5.92398 6.26506 6.36977 6.80753 6.87045 7.32637 8.08883 8.32915 9.26244 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.002043 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.549851 B =13701.931732 C =14422.847522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.106 0.894 4 C 0.090 3.910 5 N -0.606 5.606 6 C 0.561 3.439 7 O -0.580 6.580 8 C -0.007 4.007 9 C -0.234 4.234 10 C 0.168 3.832 11 N -0.488 5.488 12 C 0.049 3.951 13 C 0.505 3.495 14 O -0.597 6.597 15 C -0.223 4.223 16 C 0.106 3.894 17 C -0.084 4.084 18 H 0.074 0.926 19 C -0.097 4.097 20 C 0.147 3.853 21 N -0.746 5.746 22 C -0.249 4.249 23 H 0.069 0.931 24 C -0.074 4.074 25 N -0.966 5.966 26 Si 0.972 3.028 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.273 1.273 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.190 0.810 36 H 0.236 0.764 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.012 0.988 46 H 0.013 0.987 47 H 0.376 0.624 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 -0.292 -32.886 34.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.124 0.876 4 C -0.031 4.031 5 N -0.337 5.337 6 C 0.351 3.649 7 O -0.461 6.461 8 C -0.015 4.015 9 C -0.255 4.255 10 C 0.040 3.960 11 N -0.196 5.196 12 C -0.090 4.090 13 C 0.308 3.692 14 O -0.484 6.484 15 C -0.246 4.246 16 C -0.016 4.016 17 C -0.104 4.104 18 H 0.093 0.907 19 C -0.136 4.136 20 C 0.021 3.979 21 N -0.389 5.389 22 C -0.381 4.381 23 H 0.087 0.913 24 C -0.266 4.266 25 N -0.617 5.617 26 Si 0.801 3.199 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.198 1.198 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.207 0.793 36 H 0.252 0.748 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.155 0.845 40 H 0.146 0.854 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.030 0.970 46 H 0.031 0.969 47 H 0.208 0.792 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.866 -1.671 -32.848 34.639 hybrid contribution 0.778 -0.600 1.817 2.065 sum -10.088 -2.271 -31.032 32.709 Atomic orbital electron populations 1.21845 0.93021 1.01824 1.03168 1.22197 0.97250 1.00128 0.91888 0.87587 1.22989 0.96828 0.86031 0.97255 1.48784 1.52487 1.14838 1.17592 1.18471 0.80755 0.80398 0.85303 1.90796 1.40164 1.46609 1.68493 1.20356 0.93498 0.94672 0.92929 1.21427 1.09072 1.00440 0.94584 1.22901 0.90483 0.86636 0.95955 1.45577 1.48728 1.07049 1.18266 1.22545 1.00231 1.06056 0.80206 1.16952 0.81507 0.84776 0.85965 1.90933 1.57925 1.23125 1.76412 1.22376 1.07167 0.97673 0.97405 1.22675 0.97905 0.99022 0.82005 1.22207 0.96192 0.96876 0.95104 0.90709 1.21545 1.01553 0.97494 0.92959 1.20871 0.95769 0.92662 0.88612 1.42563 1.79209 1.05525 1.11573 1.19610 1.35007 0.92275 0.91227 0.91257 1.25548 1.03316 0.95692 1.02082 1.69796 1.55628 1.01685 1.34546 0.85166 0.77956 0.77235 0.79561 1.21396 1.21726 1.19787 0.93357 0.92829 0.89621 0.87327 0.87446 0.79301 0.74819 0.89217 0.90858 0.84486 0.85446 0.89788 0.92482 0.91095 0.90917 0.97005 0.96911 0.79168 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.89 71.98 0.64 -0.91 16 2 C -0.10 -1.22 3.17 -9.90 -0.03 -1.25 16 3 H 0.11 1.13 7.85 -2.39 -0.02 1.11 16 4 C 0.09 0.89 4.79 86.53 0.41 1.31 16 5 N -0.61 -12.41 3.30 -811.42 -2.68 -15.09 16 6 C 0.56 14.63 7.70 86.97 0.67 15.30 16 7 O -0.58 -21.29 16.99 -3.63 -0.06 -21.35 16 8 C -0.01 -0.14 5.72 -19.82 -0.11 -0.25 16 9 C -0.23 -1.74 7.95 22.30 0.18 -1.56 16 10 C 0.17 0.40 10.25 83.41 0.86 1.25 16 11 N -0.49 -5.11 2.98 -674.33 -2.01 -7.12 16 12 C 0.05 0.19 10.34 127.77 1.32 1.51 16 13 C 0.50 11.46 7.42 84.93 0.63 12.09 16 14 O -0.60 -18.63 16.62 -5.37 -0.09 -18.72 16 15 C -0.22 -5.48 9.61 22.95 0.22 -5.26 16 16 C 0.11 2.61 5.94 86.68 0.51 3.12 16 17 C -0.08 -1.82 2.58 -9.58 -0.02 -1.84 16 18 H 0.07 1.79 7.86 -2.39 -0.02 1.77 16 19 C -0.10 -2.74 4.71 30.59 0.14 -2.59 16 20 C 0.15 5.88 6.15 86.38 0.53 6.41 16 21 N -0.75 -38.36 5.60 -343.43 -1.92 -40.28 16 22 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 23 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 24 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 25 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 26 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 27 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 30 H 0.05 0.61 8.13 -2.39 -0.02 0.59 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.61 5.71 -2.39 -0.01 0.59 16 34 H 0.11 0.45 7.43 -2.39 -0.02 0.43 16 35 H 0.19 0.23 4.93 -2.91 -0.01 0.22 16 36 H 0.24 -2.40 8.02 -2.91 -0.02 -2.42 16 37 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.07 0.69 7.37 -2.39 -0.02 0.67 16 39 H 0.14 -0.78 8.00 -2.39 -0.02 -0.80 16 40 H 0.13 3.80 7.94 -2.91 -0.02 3.78 16 41 H 0.08 2.00 7.95 -2.38 -0.02 1.98 16 42 H 0.06 1.76 7.89 -2.39 -0.02 1.74 16 43 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.01 0.53 7.67 -2.39 -0.02 0.51 16 47 H 0.38 20.08 7.67 -92.71 -0.71 19.37 16 48 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -90.26 389.41 3.06 -87.20 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.26 Total: 15.23 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 7.26 Total: 10.00 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -6.33 Total: -121.34 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.15 Total: -40.07 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -90.26 3.06 -87.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104360347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.077 kcal (2) G-P(sol) polarization free energy of solvation -90.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds