Wall clock time and date at job start Tue Mar 31 2020 17:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.65418 * 2 1 4 4 C 1.54595 * 110.98390 * 236.84402 * 2 1 3 5 5 N 1.48118 * 103.42095 * 204.37199 * 4 2 1 6 6 C 1.34780 * 127.03554 * 219.29179 * 5 4 2 7 7 O 1.21609 * 119.99482 * 4.77145 * 6 5 4 8 8 C 1.47458 * 120.00217 * 184.77414 * 6 5 4 9 9 C 1.41592 * 120.25537 * 255.14239 * 8 6 5 10 10 C 1.35977 * 119.01013 * 179.97438 * 9 8 6 11 11 C 1.40766 * 119.49620 * 359.97438 * 10 9 8 12 12 O 1.21966 * 119.74464 * 179.97438 * 11 10 9 13 13 N 1.34540 * 120.50340 * 0.02562 * 11 10 9 14 14 C 1.46498 * 119.47708 * 180.02562 * 13 11 10 15 15 C 1.34597 * 121.04377 * 359.97438 * 13 11 10 16 16 C 1.47480 * 105.93170 * 39.02500 * 5 4 2 17 17 C 1.54006 * 107.08567 * 334.78020 * 16 5 4 18 18 H 1.08996 * 110.32298 * 120.29759 * 17 16 5 19 19 C 1.52992 * 110.32446 * 242.41243 * 17 16 5 20 20 C 1.53004 * 109.47390 * 293.54544 * 19 17 16 21 21 N 1.46498 * 109.47109 * 180.02562 * 20 19 17 22 22 C 1.36943 * 119.99848 * 180.02562 * 21 20 19 23 23 H 1.07995 * 119.99842 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99793 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99984 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00189 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46902 * 90.00154 * 26 24 22 28 28 H 1.48496 * 109.47292 * 210.00277 * 26 24 22 29 29 H 1.48498 * 109.47052 * 330.00363 * 26 24 22 30 30 H 1.08998 * 109.47097 * 296.80126 * 1 2 3 31 31 H 1.09001 * 109.47422 * 56.80720 * 1 2 3 32 32 H 1.09007 * 109.46953 * 176.80836 * 1 2 3 33 33 H 1.09008 * 110.61727 * 85.86217 * 4 2 1 34 34 H 1.09002 * 110.55352 * 322.85274 * 4 2 1 35 35 H 1.07994 * 120.49697 * 359.69692 * 9 8 6 36 36 H 1.07999 * 120.25237 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.47014 * 269.97493 * 14 13 11 38 38 H 1.09002 * 109.47411 * 29.97745 * 14 13 11 39 39 H 1.08997 * 109.47026 * 149.97710 * 14 13 11 40 40 H 1.07998 * 119.76756 * 179.97438 * 15 13 11 41 41 H 1.09004 * 109.91148 * 94.14450 * 16 5 4 42 42 H 1.09008 * 109.91403 * 215.22557 * 16 5 4 43 43 H 1.08998 * 109.47712 * 53.54848 * 19 17 16 44 44 H 1.09004 * 109.46876 * 173.54433 * 19 17 16 45 45 H 1.09001 * 109.46668 * 299.99872 * 20 19 17 46 46 H 1.08993 * 109.46867 * 60.00404 * 20 19 17 47 47 H 0.96998 * 120.00265 * 359.97438 * 21 20 19 48 48 H 0.96996 * 120.00683 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0836 -0.7894 -1.2084 5 7 3.4320 -1.2057 -0.7585 6 6 4.5593 -1.2405 -1.4966 7 8 4.5508 -0.8246 -2.6393 8 6 5.8026 -1.7830 -0.9185 9 6 6.8432 -0.9103 -0.5179 10 6 7.9787 -1.4378 0.0126 11 6 8.0950 -2.8336 0.1521 12 8 9.1116 -3.3117 0.6270 13 7 7.0937 -3.6445 -0.2352 14 6 7.2384 -5.0939 -0.0792 15 6 5.9607 -3.1450 -0.7629 16 6 3.2903 -1.5681 0.6640 17 6 2.0775 -0.7916 1.2100 18 1 1.3229 -1.4830 1.5850 19 6 2.5158 0.1676 2.3183 20 6 3.0055 -0.6363 3.5246 21 7 3.4246 0.2823 4.5861 22 6 3.9036 -0.2122 5.7699 23 1 3.9719 -1.2794 5.9211 24 6 4.3012 0.6582 6.7754 25 7 4.7620 0.1829 7.9130 26 14 4.1837 2.5040 6.5136 27 1 2.8532 2.9843 6.9657 28 1 5.2473 3.1836 7.2958 29 1 4.3570 2.8113 5.0711 30 1 -0.3633 0.4634 0.9172 31 1 -0.3634 0.5626 -0.8600 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1523 -0.1479 -2.0871 34 1 1.4611 -1.6602 -1.4144 35 1 6.7385 0.1581 -0.6361 36 1 8.7848 -0.7906 0.3253 37 1 7.6860 -5.5135 -0.9802 38 1 7.8792 -5.3051 0.7770 39 1 6.2578 -5.5417 0.0818 40 1 5.1701 -3.8149 -1.0673 41 1 3.1179 -2.6402 0.7586 42 1 4.1909 -1.2875 1.2102 43 1 3.3235 0.8014 1.9521 44 1 1.6716 0.7901 2.6150 45 1 2.1977 -1.2699 3.8909 46 1 3.8496 -1.2586 3.2280 47 1 3.3636 1.2408 4.4501 48 1 5.0395 0.7910 8.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104384028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:06 Heat of formation + Delta-G solvation = -19.756643 kcal Electronic energy + Delta-G solvation = -29022.686911 eV Core-core repulsion = 25078.521038 eV Total energy + Delta-G solvation = -3944.165873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71586 -40.29889 -38.32706 -37.00419 -35.32648 -34.90404 -33.37577 -32.26108 -30.60460 -30.45310 -28.20275 -27.37489 -26.72669 -24.75978 -24.20404 -23.21848 -22.25039 -20.97488 -20.21611 -19.99597 -17.98198 -17.87948 -17.54964 -17.03349 -16.56925 -16.25846 -16.07561 -15.48840 -14.83032 -14.57431 -14.53848 -14.39643 -14.02294 -13.73007 -13.55898 -13.54188 -13.24850 -13.05836 -12.81251 -12.70937 -12.63003 -12.43712 -12.26459 -12.06509 -12.00612 -11.56836 -11.41949 -11.28916 -10.95527 -10.70878 -10.60354 -10.46804 -10.31686 -10.24171 -10.16828 -10.10221 -9.60887 -8.93680 -8.90745 -8.25357 -7.25609 -5.78523 -3.14439 0.51634 1.32750 2.12431 2.40362 2.78132 3.35810 3.35891 3.38330 3.44214 4.05192 4.11675 4.34048 4.38006 4.53302 4.56575 4.57687 4.63558 4.78534 4.86665 4.95440 5.02707 5.10330 5.23145 5.26632 5.31101 5.36459 5.42159 5.49839 5.52523 5.58114 5.61623 5.63071 5.68522 5.80228 5.87241 5.89469 5.93774 5.98387 6.00573 6.11107 6.12315 6.29887 6.65849 6.66985 6.70544 7.25302 7.72127 7.85940 7.97072 8.40419 9.19404 9.91844 10.11119 11.39920 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007980 B = 0.004013 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3507.989936 B = 6975.786911 C = 9428.267917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.084 0.916 4 C 0.108 3.892 5 N -0.614 5.614 6 C 0.599 3.401 7 O -0.534 6.534 8 C -0.232 4.232 9 C 0.011 3.989 10 C -0.233 4.233 11 C 0.514 3.486 12 O -0.542 6.542 13 N -0.490 5.490 14 C 0.055 3.945 15 C 0.174 3.826 16 C 0.101 3.899 17 C -0.091 4.091 18 H 0.090 0.910 19 C -0.123 4.123 20 C 0.156 3.844 21 N -0.757 5.757 22 C -0.246 4.246 23 H 0.089 0.911 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.156 0.844 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.167 0.833 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.026 0.974 46 H 0.024 0.976 47 H 0.360 0.640 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 -7.215 -22.538 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.103 0.897 4 C -0.014 4.014 5 N -0.347 5.347 6 C 0.386 3.614 7 O -0.411 6.411 8 C -0.240 4.240 9 C -0.010 4.010 10 C -0.254 4.254 11 C 0.316 3.684 12 O -0.424 6.424 13 N -0.198 5.198 14 C -0.086 4.086 15 C 0.042 3.958 16 C -0.022 4.022 17 C -0.110 4.110 18 H 0.108 0.892 19 C -0.161 4.161 20 C 0.029 3.971 21 N -0.403 5.403 22 C -0.376 4.376 23 H 0.107 0.893 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.174 0.826 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.184 0.816 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.042 0.958 47 H 0.193 0.807 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.373 -7.546 -22.699 24.317 hybrid contribution -0.118 1.351 0.093 1.360 sum -4.491 -6.195 -22.606 23.866 Atomic orbital electron populations 1.21728 0.93658 1.02114 1.02320 1.22307 0.96236 0.99848 0.93878 0.89738 1.22519 0.82065 0.98827 0.97983 1.48815 1.08146 1.65617 1.12147 1.17340 0.81406 0.78073 0.84548 1.90822 1.84580 1.47726 1.17934 1.19261 0.98023 0.92578 1.14178 1.21272 0.90294 1.00261 0.89205 1.22042 1.01146 0.93590 1.08645 1.17248 0.82956 0.88152 0.79996 1.90955 1.28155 1.76985 1.46260 1.45123 1.14893 1.10246 1.49581 1.22279 1.04572 0.76792 1.04993 1.21972 0.88759 0.94647 0.90392 1.22370 1.00256 0.99195 0.80381 1.22127 0.96440 0.97460 0.95000 0.89178 1.21864 1.01185 0.98004 0.94996 1.20668 0.96643 0.92598 0.87177 1.42713 1.78926 1.03826 1.14787 1.19045 1.34675 0.94141 0.89699 0.89301 1.24675 1.00975 0.97409 0.96020 1.69697 1.49117 1.33767 1.05579 0.86546 0.77530 0.87162 0.77268 1.21067 1.21688 1.20360 0.91774 0.92468 0.92329 0.89773 0.90767 0.84260 0.82610 0.90272 0.88158 0.89290 0.81618 0.91353 0.89632 0.91851 0.91413 0.95578 0.95782 0.80701 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.17 37.16 0.34 -0.63 16 2 C -0.10 -0.87 3.18 -88.93 -0.28 -1.15 16 3 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 4 C 0.11 0.93 6.54 -2.31 -0.02 0.91 16 5 N -0.61 -6.12 3.29 -171.22 -0.56 -6.69 16 6 C 0.60 6.97 7.29 -12.50 -0.09 6.88 16 7 O -0.53 -7.97 17.30 5.27 0.09 -7.88 16 8 C -0.23 -2.42 4.68 -104.95 -0.49 -2.91 16 9 C 0.01 0.12 9.86 -39.11 -0.39 -0.26 16 10 C -0.23 -2.79 9.97 -39.44 -0.39 -3.18 16 11 C 0.51 6.85 7.40 -15.41 -0.11 6.73 16 12 O -0.54 -9.06 16.58 4.95 0.08 -8.97 16 13 N -0.49 -4.80 2.95 -126.73 -0.37 -5.18 16 14 C 0.05 0.37 10.33 59.85 0.62 0.98 16 15 C 0.17 1.46 10.02 -16.43 -0.16 1.29 16 16 C 0.10 0.96 5.90 -2.98 -0.02 0.94 16 17 C -0.09 -0.88 2.61 -89.25 -0.23 -1.11 16 18 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 19 C -0.12 -1.61 4.53 -26.73 -0.12 -1.73 16 20 C 0.16 2.76 6.08 -4.04 -0.02 2.73 16 21 N -0.76 -17.55 5.41 -59.91 -0.32 -17.88 16 22 C -0.25 -6.91 10.47 -15.06 -0.16 -7.06 16 23 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 24 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 25 N -0.93 -29.34 13.97 55.49 0.78 -28.57 16 26 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.11 -51.92 -0.42 -0.06 16 33 H 0.08 0.79 7.82 -51.92 -0.41 0.38 16 34 H 0.07 0.53 8.02 -51.93 -0.42 0.11 16 35 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.83 7.37 -51.93 -0.38 0.45 16 39 H 0.09 0.32 8.00 -51.93 -0.42 -0.09 16 40 H 0.17 0.82 8.02 -52.49 -0.42 0.40 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.97 6.39 -51.92 -0.33 0.64 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.43 6.88 -51.93 -0.36 0.07 16 47 H 0.36 8.17 5.53 -40.82 -0.23 7.95 16 48 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -37.15 392.83 -8.33 -45.47 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.59 Total: 3.99 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.63 Total: 2.49 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.49 Total: -58.31 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.17 Total: -16.85 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.15 -8.33 -45.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104384028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.717 kcal (2) G-P(sol) polarization free energy of solvation -37.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds