Wall clock time and date at job start Tue Mar 31 2020 17:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.65418 * 2 1 4 4 C 1.54595 * 110.98390 * 236.84402 * 2 1 3 5 5 N 1.48118 * 103.42095 * 204.37199 * 4 2 1 6 6 C 1.34780 * 127.03554 * 219.29179 * 5 4 2 7 7 O 1.21609 * 119.99482 * 4.77145 * 6 5 4 8 8 C 1.47458 * 120.00217 * 184.77414 * 6 5 4 9 9 C 1.41592 * 120.25537 * 255.14239 * 8 6 5 10 10 C 1.35977 * 119.01013 * 179.97438 * 9 8 6 11 11 C 1.40766 * 119.49620 * 359.97438 * 10 9 8 12 12 O 1.21966 * 119.74464 * 179.97438 * 11 10 9 13 13 N 1.34540 * 120.50340 * 0.02562 * 11 10 9 14 14 C 1.46498 * 119.47708 * 180.02562 * 13 11 10 15 15 C 1.34597 * 121.04377 * 359.97438 * 13 11 10 16 16 C 1.47480 * 105.93170 * 39.02500 * 5 4 2 17 17 C 1.54006 * 107.08567 * 334.78020 * 16 5 4 18 18 H 1.08996 * 110.32298 * 120.29759 * 17 16 5 19 19 C 1.52992 * 110.32446 * 242.41243 * 17 16 5 20 20 C 1.53004 * 109.47390 * 293.54544 * 19 17 16 21 21 N 1.46498 * 109.47109 * 180.02562 * 20 19 17 22 22 C 1.36943 * 119.99848 * 180.02562 * 21 20 19 23 23 H 1.07995 * 119.99842 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99793 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99984 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00189 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46902 * 90.00154 * 26 24 22 28 28 H 1.48496 * 109.47292 * 210.00277 * 26 24 22 29 29 H 1.48498 * 109.47052 * 330.00363 * 26 24 22 30 30 H 1.08998 * 109.47097 * 296.80126 * 1 2 3 31 31 H 1.09001 * 109.47422 * 56.80720 * 1 2 3 32 32 H 1.09007 * 109.46953 * 176.80836 * 1 2 3 33 33 H 1.09008 * 110.61727 * 85.86217 * 4 2 1 34 34 H 1.09002 * 110.55352 * 322.85274 * 4 2 1 35 35 H 1.07994 * 120.49697 * 359.69692 * 9 8 6 36 36 H 1.07999 * 120.25237 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.47014 * 269.97493 * 14 13 11 38 38 H 1.09002 * 109.47411 * 29.97745 * 14 13 11 39 39 H 1.08997 * 109.47026 * 149.97710 * 14 13 11 40 40 H 1.07998 * 119.76756 * 179.97438 * 15 13 11 41 41 H 1.09004 * 109.91148 * 94.14450 * 16 5 4 42 42 H 1.09008 * 109.91403 * 215.22557 * 16 5 4 43 43 H 1.08998 * 109.47712 * 53.54848 * 19 17 16 44 44 H 1.09004 * 109.46876 * 173.54433 * 19 17 16 45 45 H 1.09001 * 109.46668 * 299.99872 * 20 19 17 46 46 H 1.08993 * 109.46867 * 60.00404 * 20 19 17 47 47 H 0.96998 * 120.00265 * 359.97438 * 21 20 19 48 48 H 0.96996 * 120.00683 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0836 -0.7894 -1.2084 5 7 3.4320 -1.2057 -0.7585 6 6 4.5593 -1.2405 -1.4966 7 8 4.5508 -0.8246 -2.6393 8 6 5.8026 -1.7830 -0.9185 9 6 6.8432 -0.9103 -0.5179 10 6 7.9787 -1.4378 0.0126 11 6 8.0950 -2.8336 0.1521 12 8 9.1116 -3.3117 0.6270 13 7 7.0937 -3.6445 -0.2352 14 6 7.2384 -5.0939 -0.0792 15 6 5.9607 -3.1450 -0.7629 16 6 3.2903 -1.5681 0.6640 17 6 2.0775 -0.7916 1.2100 18 1 1.3229 -1.4830 1.5850 19 6 2.5158 0.1676 2.3183 20 6 3.0055 -0.6363 3.5246 21 7 3.4246 0.2823 4.5861 22 6 3.9036 -0.2122 5.7699 23 1 3.9719 -1.2794 5.9211 24 6 4.3012 0.6582 6.7754 25 7 4.7620 0.1829 7.9130 26 14 4.1837 2.5040 6.5136 27 1 2.8532 2.9843 6.9657 28 1 5.2473 3.1836 7.2958 29 1 4.3570 2.8113 5.0711 30 1 -0.3633 0.4634 0.9172 31 1 -0.3634 0.5626 -0.8600 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1523 -0.1479 -2.0871 34 1 1.4611 -1.6602 -1.4144 35 1 6.7385 0.1581 -0.6361 36 1 8.7848 -0.7906 0.3253 37 1 7.6860 -5.5135 -0.9802 38 1 7.8792 -5.3051 0.7770 39 1 6.2578 -5.5417 0.0818 40 1 5.1701 -3.8149 -1.0673 41 1 3.1179 -2.6402 0.7586 42 1 4.1909 -1.2875 1.2102 43 1 3.3235 0.8014 1.9521 44 1 1.6716 0.7901 2.6150 45 1 2.1977 -1.2699 3.8909 46 1 3.8496 -1.2586 3.2280 47 1 3.3636 1.2408 4.4501 48 1 5.0395 0.7910 8.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104384028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:05 Heat of formation + Delta-G solvation = -44.920675 kcal Electronic energy + Delta-G solvation = -29023.778106 eV Core-core repulsion = 25078.521038 eV Total energy + Delta-G solvation = -3945.257068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.58394 -41.14032 -39.24087 -38.00158 -36.95128 -35.72214 -34.51028 -33.68913 -32.14506 -31.30195 -28.87032 -28.59924 -27.41406 -25.92009 -25.21220 -24.17378 -23.71361 -22.17423 -20.98756 -20.87054 -19.58024 -18.80343 -18.69754 -17.96474 -17.41650 -17.09675 -16.93323 -16.54828 -16.27692 -15.80466 -15.58670 -15.45894 -15.31738 -14.87335 -14.60421 -14.34386 -14.30772 -14.18204 -13.86097 -13.53449 -13.50958 -13.39137 -13.19155 -13.10034 -12.92957 -12.82119 -12.71678 -12.44267 -12.30043 -12.03042 -11.84183 -11.61129 -11.46874 -11.30656 -11.24785 -11.21942 -11.09600 -10.93983 -9.73627 -9.27828 -9.14434 -8.02801 -5.35846 -0.28074 0.41614 1.31143 1.37213 1.40854 1.48222 1.56447 1.97571 2.46080 2.48396 3.28268 3.29381 3.49299 3.50513 3.61716 3.64604 3.75844 3.88964 4.02578 4.05762 4.28921 4.32580 4.34468 4.38479 4.44448 4.52791 4.63126 4.71304 4.72936 4.78815 4.79310 4.83531 4.86991 4.89179 4.97376 5.00760 5.06630 5.19219 5.25563 5.31021 5.32539 5.38655 5.43658 5.61208 5.76455 5.81124 6.21739 6.42584 6.77439 7.00301 7.09164 7.86686 8.03652 9.18894 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007980 B = 0.004013 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3507.989936 B = 6975.786911 C = 9428.267917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.072 0.928 4 C 0.108 3.892 5 N -0.609 5.609 6 C 0.604 3.396 7 O -0.571 6.571 8 C -0.252 4.252 9 C 0.022 3.978 10 C -0.261 4.261 11 C 0.501 3.499 12 O -0.591 6.591 13 N -0.485 5.485 14 C 0.047 3.953 15 C 0.198 3.802 16 C 0.100 3.900 17 C -0.084 4.084 18 H 0.108 0.892 19 C -0.110 4.110 20 C 0.152 3.848 21 N -0.762 5.762 22 C -0.234 4.234 23 H 0.056 0.944 24 C -0.065 4.065 25 N -0.985 5.985 26 Si 0.954 3.046 27 H -0.275 1.275 28 H -0.298 1.298 29 H -0.252 1.252 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.213 0.787 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.024 0.976 47 H 0.365 0.635 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 -7.484 -24.727 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.014 4.014 5 N -0.340 5.340 6 C 0.392 3.608 7 O -0.451 6.451 8 C -0.260 4.260 9 C 0.000 4.000 10 C -0.283 4.283 11 C 0.305 3.695 12 O -0.477 6.477 13 N -0.191 5.191 14 C -0.093 4.093 15 C 0.065 3.935 16 C -0.022 4.022 17 C -0.103 4.103 18 H 0.126 0.874 19 C -0.148 4.148 20 C 0.026 3.974 21 N -0.408 5.408 22 C -0.365 4.365 23 H 0.074 0.926 24 C -0.256 4.256 25 N -0.636 5.636 26 Si 0.782 3.218 27 H -0.201 1.201 28 H -0.225 1.225 29 H -0.177 1.177 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.229 0.771 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.042 0.958 47 H 0.198 0.802 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.233 -7.835 -24.936 27.121 hybrid contribution 0.658 1.313 0.740 1.645 sum -6.574 -6.522 -24.196 25.908 Atomic orbital electron populations 1.21712 0.92141 1.03145 1.02472 1.22228 0.97351 0.98927 0.92970 0.90943 1.22665 0.81480 0.99691 0.97555 1.48830 1.08336 1.64709 1.12172 1.17339 0.81799 0.77633 0.84022 1.90808 1.85134 1.49575 1.19588 1.19287 0.97750 0.93558 1.15401 1.21390 0.89901 1.00898 0.87824 1.22001 1.01993 0.93465 1.10812 1.17460 0.83170 0.88863 0.79962 1.90916 1.30129 1.77787 1.48907 1.45209 1.14337 1.11409 1.48123 1.22585 1.06775 0.74878 1.05012 1.22579 0.88592 0.94632 0.87655 1.22423 0.99330 1.00719 0.79751 1.22085 0.96872 0.97142 0.94237 0.87422 1.21729 1.00922 0.98082 0.94034 1.20901 0.96584 0.92504 0.87412 1.42791 1.78682 1.04874 1.14468 1.19048 1.33236 0.92797 0.91394 0.92564 1.25521 1.01576 1.02728 0.95821 1.69884 1.51316 1.35526 1.06870 0.85416 0.77410 0.80604 0.78409 1.20114 1.22534 1.17659 0.92240 0.91691 0.90945 0.90667 0.88329 0.83594 0.82986 0.88626 0.90240 0.85222 0.77082 0.88688 0.91546 0.92604 0.90960 0.95268 0.95812 0.80230 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.17 71.98 0.66 -0.72 16 2 C -0.10 -1.29 3.18 -9.70 -0.03 -1.32 16 3 H 0.07 1.18 7.86 -2.39 -0.02 1.16 16 4 C 0.11 1.48 6.54 86.61 0.57 2.05 16 5 N -0.61 -10.31 3.29 -813.87 -2.68 -12.99 16 6 C 0.60 12.77 7.29 86.67 0.63 13.40 16 7 O -0.57 -16.24 17.30 -4.06 -0.07 -16.31 16 8 C -0.25 -4.83 4.68 -20.08 -0.09 -4.92 16 9 C 0.02 0.47 9.86 22.57 0.22 0.70 16 10 C -0.26 -6.54 9.97 22.36 0.22 -6.32 16 11 C 0.50 13.69 7.40 84.90 0.63 14.32 16 12 O -0.59 -20.85 16.58 -5.20 -0.09 -20.94 16 13 N -0.48 -8.78 2.95 -673.10 -1.99 -10.77 16 14 C 0.05 0.53 10.33 127.77 1.32 1.85 16 15 C 0.20 2.74 10.02 84.21 0.84 3.58 16 16 C 0.10 1.58 5.90 86.53 0.51 2.09 16 17 C -0.08 -1.33 2.61 -9.91 -0.03 -1.35 16 18 H 0.11 1.42 7.86 -2.39 -0.02 1.40 16 19 C -0.11 -2.60 4.53 30.59 0.14 -2.46 16 20 C 0.15 5.09 6.08 86.38 0.53 5.62 16 21 N -0.76 -34.46 5.41 -343.45 -1.86 -36.32 16 22 C -0.23 -13.23 10.47 84.03 0.88 -12.35 16 23 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 24 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 25 N -0.99 -63.47 13.97 21.65 0.30 -63.17 16 26 Si 0.95 45.31 27.74 68.60 1.90 47.21 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.55 8.11 -2.38 -0.02 0.53 16 33 H 0.07 1.22 7.82 -2.38 -0.02 1.21 16 34 H 0.10 0.93 8.02 -2.39 -0.02 0.92 16 35 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 36 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.08 1.30 7.37 -2.39 -0.02 1.28 16 39 H 0.13 0.40 8.00 -2.39 -0.02 0.38 16 40 H 0.21 0.96 8.02 -2.91 -0.02 0.93 16 41 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.07 1.35 6.39 -2.38 -0.02 1.34 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.02 0.82 6.88 -2.39 -0.02 0.80 16 47 H 0.36 15.76 5.53 -92.71 -0.51 15.25 16 48 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -84.39 392.83 3.38 -81.01 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.39 Total: 21.48 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 7.47 Total: 10.79 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -6.22 Total: -123.25 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.16 Total: -37.25 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Total: -84.39 3.38 -81.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104384028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.094 kcal (2) G-P(sol) polarization free energy of solvation -84.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds