Wall clock time and date at job start Tue Mar 31 2020 17:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.91803 * 2 1 4 4 C 1.54905 * 111.00341 * 236.09352 * 2 1 3 5 5 N 1.47426 * 104.83290 * 204.91502 * 4 2 1 6 6 C 1.34782 * 125.65059 * 204.16205 * 5 4 2 7 7 O 1.21617 * 119.99582 * 355.12864 * 6 5 4 8 8 C 1.47285 * 119.99839 * 175.12802 * 6 5 4 9 9 C 1.37994 * 120.88513 * 7.62456 * 8 6 5 10 10 N 1.34344 * 120.37306 * 179.71302 * 9 8 6 11 11 C 1.46493 * 118.80348 * 180.26928 * 10 9 8 12 12 C 1.35580 * 122.38801 * 0.58698 * 10 9 8 13 13 C 1.34873 * 121.80102 * 359.70466 * 12 10 9 14 14 C 1.41666 * 119.33587 * 359.97438 * 13 12 10 15 15 O 1.22093 * 121.06604 * 180.02562 * 14 13 12 16 16 C 1.47025 * 108.70179 * 24.13279 * 5 4 2 17 17 C 1.54321 * 107.26818 * 358.93888 * 16 5 4 18 18 H 1.09002 * 110.72414 * 96.35336 * 17 16 5 19 19 C 1.53005 * 110.72024 * 219.44250 * 17 16 5 20 20 C 1.52998 * 109.47248 * 293.55060 * 19 17 16 21 21 N 1.46500 * 109.47211 * 179.97438 * 20 19 17 22 22 C 1.36934 * 119.99773 * 179.97438 * 21 20 19 23 23 H 1.08000 * 120.00523 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99969 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99833 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00249 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46897 * 270.00163 * 26 24 22 28 28 H 1.48495 * 109.47089 * 149.99859 * 26 24 22 29 29 H 1.48504 * 109.46912 * 29.99810 * 26 24 22 30 30 H 1.09000 * 109.47220 * 296.10051 * 1 2 3 31 31 H 1.09004 * 109.46982 * 56.09654 * 1 2 3 32 32 H 1.09005 * 109.47177 * 176.09932 * 1 2 3 33 33 H 1.09001 * 110.36776 * 86.08160 * 4 2 1 34 34 H 1.08996 * 110.46491 * 323.80726 * 4 2 1 35 35 H 1.08002 * 119.80790 * 359.97438 * 9 8 6 36 36 H 1.09007 * 109.47310 * 270.29803 * 11 10 9 37 37 H 1.08994 * 109.47535 * 30.30378 * 11 10 9 38 38 H 1.09004 * 109.46810 * 150.30670 * 11 10 9 39 39 H 1.08002 * 119.10447 * 179.68488 * 12 10 9 40 40 H 1.07995 * 120.33240 * 180.02562 * 13 12 10 41 41 H 1.08993 * 109.87936 * 239.52074 * 16 5 4 42 42 H 1.09001 * 109.87961 * 118.35623 * 16 5 4 43 43 H 1.08990 * 109.47231 * 173.54491 * 19 17 16 44 44 H 1.09008 * 109.46515 * 53.54777 * 19 17 16 45 45 H 1.09006 * 109.47299 * 59.99267 * 20 19 17 46 46 H 1.09000 * 109.47116 * 299.99605 * 20 19 17 47 47 H 0.96998 * 120.00035 * 359.97438 * 21 20 19 48 48 H 0.97001 * 119.99802 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4481 -1.5604 -1.5939 7 8 4.2760 -1.5837 -2.7976 8 6 5.7721 -1.8790 -1.0329 9 6 5.9513 -2.0114 0.3289 10 7 7.1623 -2.3079 0.8291 11 6 7.3123 -2.4462 2.2798 12 6 8.2521 -2.4775 0.0406 13 6 8.1829 -2.3636 -1.3015 14 6 6.9399 -2.0590 -1.9091 15 8 6.8412 -1.9491 -3.1210 16 6 3.4674 -1.2741 0.6961 17 6 2.0861 -0.8079 1.2022 18 1 1.4478 -1.6632 1.4240 19 6 2.2349 0.0877 2.4338 20 6 2.7848 -0.7361 3.6000 21 7 2.9278 0.1216 4.7791 22 6 3.4053 -0.4004 5.9515 23 1 3.6761 -1.4444 6.0072 24 6 3.5403 0.4121 7.0689 25 7 3.2098 1.6843 7.0013 26 14 4.1923 -0.2998 8.6682 27 1 3.0591 -0.8081 9.4821 28 1 4.9099 0.7577 9.4244 29 1 5.1263 -1.4149 8.3691 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8530 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1560 -0.1721 -2.0836 34 1 1.4525 -1.6704 -1.4043 35 1 5.1121 -1.8800 0.9960 36 1 7.5593 -1.4772 2.7136 37 1 6.3782 -2.8088 2.7087 38 1 8.1111 -3.1554 2.4965 39 1 9.2017 -2.7098 0.4997 40 1 9.0661 -2.5039 -1.9070 41 1 4.2425 -0.5998 1.0600 42 1 3.6650 -2.2894 1.0401 43 1 1.2619 0.4970 2.7051 44 1 2.9223 0.9032 2.2090 45 1 3.7579 -1.1455 3.3287 46 1 2.0974 -1.5516 3.8248 47 1 2.6842 1.0592 4.7292 48 1 2.8723 2.0542 6.1705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104405833.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:23 Heat of formation + Delta-G solvation = -3.393047 kcal Electronic energy + Delta-G solvation = -29244.200746 eV Core-core repulsion = 25300.744452 eV Total energy + Delta-G solvation = -3943.456295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40599 -40.00715 -38.34780 -37.42676 -35.42283 -33.81970 -32.74917 -32.70151 -31.59722 -30.15982 -27.48864 -27.17970 -26.59493 -25.04214 -23.88896 -22.96421 -22.62656 -20.98703 -20.28818 -20.00669 -18.12592 -17.46152 -17.37867 -17.07366 -16.37393 -15.97069 -15.72111 -15.22651 -14.91188 -14.85366 -14.56885 -14.27902 -13.89986 -13.86480 -13.75151 -13.49546 -13.40063 -13.20854 -13.05487 -12.72128 -12.62477 -12.59311 -12.25276 -12.18050 -11.80935 -11.55711 -11.31995 -10.88186 -10.86619 -10.66543 -10.58364 -10.38488 -10.12158 -10.02522 -9.95151 -9.29202 -9.24573 -9.01222 -8.74732 -8.14677 -7.14387 -6.22894 -3.23860 0.67034 1.15296 2.17525 2.83651 2.91490 3.40471 3.45426 3.59338 3.74640 3.94869 4.15603 4.27266 4.30929 4.45130 4.49870 4.55462 4.62732 4.77267 4.88069 4.92954 4.99893 5.10750 5.13485 5.15064 5.24299 5.36409 5.37479 5.40561 5.51005 5.53809 5.55355 5.64786 5.69484 5.81154 5.89353 5.93668 5.98452 6.03971 6.09335 6.19186 6.28691 6.35314 6.53628 6.54443 6.61797 7.44299 7.66066 8.04999 8.28044 8.63109 9.09856 9.96262 10.10963 11.25538 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003557 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.519172 B = 7870.735016 C =10365.772784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.114 3.886 5 N -0.623 5.623 6 C 0.591 3.409 7 O -0.516 6.516 8 C -0.307 4.307 9 C 0.144 3.856 10 N -0.471 5.471 11 C 0.049 3.951 12 C 0.127 3.873 13 C -0.270 4.270 14 C 0.408 3.592 15 O -0.487 6.487 16 C 0.089 3.911 17 C -0.088 4.088 18 H 0.090 0.910 19 C -0.120 4.120 20 C 0.159 3.841 21 N -0.745 5.745 22 C -0.336 4.336 23 H 0.064 0.936 24 C -0.043 4.043 25 N -0.942 5.942 26 Si 1.081 2.919 27 H -0.295 1.295 28 H -0.287 1.287 29 H -0.295 1.295 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.197 0.803 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.013 0.987 46 H 0.020 0.980 47 H 0.367 0.633 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -8.522 -10.330 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.105 0.895 4 C -0.008 4.008 5 N -0.359 5.359 6 C 0.381 3.619 7 O -0.391 6.391 8 C -0.318 4.318 9 C 0.014 3.986 10 N -0.157 5.157 11 C -0.092 4.092 12 C 0.003 3.997 13 C -0.294 4.294 14 C 0.295 3.705 15 O -0.368 6.368 16 C -0.033 4.033 17 C -0.108 4.108 18 H 0.109 0.891 19 C -0.158 4.158 20 C 0.032 3.968 21 N -0.391 5.391 22 C -0.467 4.467 23 H 0.082 0.918 24 C -0.241 4.241 25 N -0.587 5.587 26 Si 0.912 3.088 27 H -0.222 1.222 28 H -0.213 1.213 29 H -0.222 1.222 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.213 0.787 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.030 0.970 46 H 0.038 0.962 47 H 0.200 0.800 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.165 -8.427 -9.908 13.995 hybrid contribution -0.326 -0.170 -1.250 1.303 sum 4.838 -8.597 -11.158 14.893 Atomic orbital electron populations 1.21688 0.93463 1.02226 1.02387 1.22447 0.96475 0.99530 0.93606 0.89466 1.22283 0.82516 0.98261 0.97750 1.48419 1.12592 1.68565 1.06313 1.17172 0.82075 0.77075 0.85577 1.90839 1.82766 1.51659 1.13828 1.22336 0.97288 1.19268 0.92926 1.24108 0.88708 0.89233 0.96572 1.42884 1.06842 1.56651 1.09282 1.22607 1.05707 1.04832 0.76009 1.21791 0.90798 0.95023 0.92097 1.22456 1.01115 1.11863 0.94016 1.18150 0.86693 0.76792 0.88907 1.90809 1.86759 1.44266 1.14960 1.22589 0.99448 1.00606 0.80695 1.22297 0.94530 0.99109 0.94851 0.89132 1.21798 1.02218 0.98161 0.93598 1.20593 0.96552 0.93266 0.86437 1.42387 1.79683 1.08808 1.08191 1.20017 1.40443 0.95946 0.90283 0.91798 1.25777 1.01156 0.95528 1.01671 1.70853 1.46473 1.12650 1.28737 0.83215 0.75980 0.74376 0.75204 1.22231 1.21329 1.22184 0.91686 0.92321 0.92305 0.90418 0.91343 0.78685 0.89349 0.88530 0.88783 0.81800 0.82950 0.90353 0.90800 0.91059 0.91677 0.96954 0.96206 0.79987 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.31 37.16 0.35 -0.84 16 2 C -0.10 -1.00 3.09 -88.47 -0.27 -1.27 16 3 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 4 C 0.11 1.31 6.36 -2.53 -0.02 1.29 16 5 N -0.62 -8.03 3.33 -173.73 -0.58 -8.61 16 6 C 0.59 9.66 7.80 -12.58 -0.10 9.56 16 7 O -0.52 -10.69 15.91 -14.54 -0.23 -10.92 16 8 C -0.31 -4.39 6.05 -102.72 -0.62 -5.02 16 9 C 0.14 1.45 8.89 -16.54 -0.15 1.30 16 10 N -0.47 -3.57 2.97 -124.39 -0.37 -3.94 16 11 C 0.05 0.23 10.52 59.84 0.63 0.86 16 12 C 0.13 0.92 10.17 -17.09 -0.17 0.74 16 13 C -0.27 -2.90 10.01 -39.47 -0.40 -3.29 16 14 C 0.41 6.48 6.96 -34.68 -0.24 6.24 16 15 O -0.49 -10.01 16.44 -14.97 -0.25 -10.26 16 16 C 0.09 0.92 3.63 -3.06 -0.01 0.91 16 17 C -0.09 -0.92 2.45 -88.78 -0.22 -1.13 16 18 H 0.09 0.89 8.04 -51.93 -0.42 0.48 16 19 C -0.12 -1.55 4.72 -26.73 -0.13 -1.68 16 20 C 0.16 2.67 6.11 -4.04 -0.02 2.65 16 21 N -0.75 -16.99 5.60 -59.91 -0.34 -17.32 16 22 C -0.34 -8.73 9.99 -15.06 -0.15 -8.88 16 23 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 24 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 25 N -0.94 -27.68 13.70 55.49 0.76 -26.92 16 26 Si 1.08 24.18 29.92 -169.99 -5.09 19.09 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.30 -6.09 7.11 56.52 0.40 -5.69 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.07 0.74 7.99 -51.93 -0.41 0.32 16 35 H 0.20 1.69 2.74 -54.95 -0.15 1.53 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.43 7.96 -51.93 -0.41 0.02 16 38 H 0.09 0.21 7.96 -51.93 -0.41 -0.21 16 39 H 0.16 0.48 7.97 -52.49 -0.42 0.06 16 40 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.08 0.81 6.32 -51.93 -0.33 0.48 16 42 H 0.07 0.65 6.82 -51.93 -0.35 0.30 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.87 8.06 -51.92 -0.42 0.45 16 45 H 0.01 0.20 7.49 -51.93 -0.39 -0.19 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.37 8.69 6.50 -40.82 -0.27 8.42 16 48 H 0.26 7.39 6.77 -40.82 -0.28 7.11 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -39.00 386.18 -9.14 -48.15 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.26 Total: 4.75 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.62 Total: 0.17 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.52 Total: -56.80 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.48 Total: -21.18 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.09 Total: 19.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.00 -9.14 -48.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104405833.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.752 kcal (2) G-P(sol) polarization free energy of solvation -39.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds