Wall clock time and date at job start Tue Mar 31 2020 17:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.91803 * 2 1 4 4 C 1.54905 * 111.00341 * 236.09352 * 2 1 3 5 5 N 1.47426 * 104.83290 * 204.91502 * 4 2 1 6 6 C 1.34782 * 125.65059 * 204.16205 * 5 4 2 7 7 O 1.21617 * 119.99582 * 355.12864 * 6 5 4 8 8 C 1.47285 * 119.99839 * 175.12802 * 6 5 4 9 9 C 1.37994 * 120.88513 * 7.62456 * 8 6 5 10 10 N 1.34344 * 120.37306 * 179.71302 * 9 8 6 11 11 C 1.46493 * 118.80348 * 180.26928 * 10 9 8 12 12 C 1.35580 * 122.38801 * 0.58698 * 10 9 8 13 13 C 1.34873 * 121.80102 * 359.70466 * 12 10 9 14 14 C 1.41666 * 119.33587 * 359.97438 * 13 12 10 15 15 O 1.22093 * 121.06604 * 180.02562 * 14 13 12 16 16 C 1.47025 * 108.70179 * 24.13279 * 5 4 2 17 17 C 1.54321 * 107.26818 * 358.93888 * 16 5 4 18 18 H 1.09002 * 110.72414 * 96.35336 * 17 16 5 19 19 C 1.53005 * 110.72024 * 219.44250 * 17 16 5 20 20 C 1.52998 * 109.47248 * 293.55060 * 19 17 16 21 21 N 1.46500 * 109.47211 * 179.97438 * 20 19 17 22 22 C 1.36934 * 119.99773 * 179.97438 * 21 20 19 23 23 H 1.08000 * 120.00523 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99969 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99833 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00249 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46897 * 270.00163 * 26 24 22 28 28 H 1.48495 * 109.47089 * 149.99859 * 26 24 22 29 29 H 1.48504 * 109.46912 * 29.99810 * 26 24 22 30 30 H 1.09000 * 109.47220 * 296.10051 * 1 2 3 31 31 H 1.09004 * 109.46982 * 56.09654 * 1 2 3 32 32 H 1.09005 * 109.47177 * 176.09932 * 1 2 3 33 33 H 1.09001 * 110.36776 * 86.08160 * 4 2 1 34 34 H 1.08996 * 110.46491 * 323.80726 * 4 2 1 35 35 H 1.08002 * 119.80790 * 359.97438 * 9 8 6 36 36 H 1.09007 * 109.47310 * 270.29803 * 11 10 9 37 37 H 1.08994 * 109.47535 * 30.30378 * 11 10 9 38 38 H 1.09004 * 109.46810 * 150.30670 * 11 10 9 39 39 H 1.08002 * 119.10447 * 179.68488 * 12 10 9 40 40 H 1.07995 * 120.33240 * 180.02562 * 13 12 10 41 41 H 1.08993 * 109.87936 * 239.52074 * 16 5 4 42 42 H 1.09001 * 109.87961 * 118.35623 * 16 5 4 43 43 H 1.08990 * 109.47231 * 173.54491 * 19 17 16 44 44 H 1.09008 * 109.46515 * 53.54777 * 19 17 16 45 45 H 1.09006 * 109.47299 * 59.99267 * 20 19 17 46 46 H 1.09000 * 109.47116 * 299.99605 * 20 19 17 47 47 H 0.96998 * 120.00035 * 359.97438 * 21 20 19 48 48 H 0.97001 * 119.99802 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4481 -1.5604 -1.5939 7 8 4.2760 -1.5837 -2.7976 8 6 5.7721 -1.8790 -1.0329 9 6 5.9513 -2.0114 0.3289 10 7 7.1623 -2.3079 0.8291 11 6 7.3123 -2.4462 2.2798 12 6 8.2521 -2.4775 0.0406 13 6 8.1829 -2.3636 -1.3015 14 6 6.9399 -2.0590 -1.9091 15 8 6.8412 -1.9491 -3.1210 16 6 3.4674 -1.2741 0.6961 17 6 2.0861 -0.8079 1.2022 18 1 1.4478 -1.6632 1.4240 19 6 2.2349 0.0877 2.4338 20 6 2.7848 -0.7361 3.6000 21 7 2.9278 0.1216 4.7791 22 6 3.4053 -0.4004 5.9515 23 1 3.6761 -1.4444 6.0072 24 6 3.5403 0.4121 7.0689 25 7 3.2098 1.6843 7.0013 26 14 4.1923 -0.2998 8.6682 27 1 3.0591 -0.8081 9.4821 28 1 4.9099 0.7577 9.4244 29 1 5.1263 -1.4149 8.3691 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8530 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1560 -0.1721 -2.0836 34 1 1.4525 -1.6704 -1.4043 35 1 5.1121 -1.8800 0.9960 36 1 7.5593 -1.4772 2.7136 37 1 6.3782 -2.8088 2.7087 38 1 8.1111 -3.1554 2.4965 39 1 9.2017 -2.7098 0.4997 40 1 9.0661 -2.5039 -1.9070 41 1 4.2425 -0.5998 1.0600 42 1 3.6650 -2.2894 1.0401 43 1 1.2619 0.4970 2.7051 44 1 2.9223 0.9032 2.2090 45 1 3.7579 -1.1455 3.3287 46 1 2.0974 -1.5516 3.8248 47 1 2.6842 1.0592 4.7292 48 1 2.8723 2.0542 6.1705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104405833.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:22 Heat of formation + Delta-G solvation = -29.513782 kcal Electronic energy + Delta-G solvation = -29245.333426 eV Core-core repulsion = 25300.744452 eV Total energy + Delta-G solvation = -3944.588975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.30153 -40.95432 -39.43195 -38.58768 -37.02424 -34.94376 -34.09451 -33.50868 -32.57782 -31.57792 -28.58908 -28.03615 -27.38277 -26.17307 -25.26597 -24.14079 -23.74854 -22.10516 -21.19629 -20.99215 -19.33138 -18.98224 -18.29320 -17.96492 -17.30918 -16.86903 -16.67562 -16.56639 -16.20246 -15.90643 -15.76477 -15.47852 -15.23801 -14.96229 -14.91569 -14.59104 -14.51464 -14.13628 -13.84028 -13.61838 -13.57328 -13.36564 -13.17182 -12.78102 -12.76819 -12.71855 -12.69613 -12.40820 -12.22808 -11.84709 -11.71803 -11.66445 -11.43049 -11.26811 -11.05621 -10.84563 -10.77051 -10.36584 -9.82780 -9.09855 -9.02789 -8.31117 -5.25909 -0.24671 0.32504 1.48636 1.64661 1.74277 1.76210 1.85888 1.87729 2.72104 2.77730 3.17845 3.27293 3.42046 3.48655 3.57957 3.61126 3.73785 3.84030 4.02094 4.07876 4.13255 4.23302 4.25611 4.33502 4.38430 4.48121 4.49131 4.58440 4.58892 4.66622 4.73599 4.75362 4.76396 4.84662 4.87347 4.96243 5.07586 5.12971 5.22226 5.30431 5.34437 5.38436 5.48450 5.63397 5.67883 5.77170 6.36843 6.57241 7.01330 7.13561 7.17555 8.08226 8.19684 9.21190 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003557 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.519172 B = 7870.735016 C =10365.772784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.082 0.918 4 C 0.109 3.891 5 N -0.619 5.619 6 C 0.581 3.419 7 O -0.579 6.579 8 C -0.352 4.352 9 C 0.178 3.822 10 N -0.458 5.458 11 C 0.038 3.962 12 C 0.163 3.837 13 C -0.298 4.298 14 C 0.383 3.617 15 O -0.567 6.567 16 C 0.083 3.917 17 C -0.077 4.077 18 H 0.106 0.894 19 C -0.105 4.105 20 C 0.154 3.846 21 N -0.761 5.761 22 C -0.327 4.327 23 H 0.074 0.926 24 C -0.106 4.106 25 N -0.982 5.982 26 Si 1.125 2.875 27 H -0.292 1.292 28 H -0.300 1.300 29 H -0.263 1.263 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.216 0.784 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.225 0.775 40 H 0.163 0.837 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.036 0.964 46 H 0.022 0.978 47 H 0.358 0.642 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 -10.525 -7.196 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.100 0.900 4 C -0.013 4.013 5 N -0.352 5.352 6 C 0.374 3.626 7 O -0.459 6.459 8 C -0.362 4.362 9 C 0.044 3.956 10 N -0.140 5.140 11 C -0.101 4.101 12 C 0.038 3.962 13 C -0.321 4.321 14 C 0.276 3.724 15 O -0.455 6.455 16 C -0.038 4.038 17 C -0.096 4.096 18 H 0.124 0.876 19 C -0.143 4.143 20 C 0.029 3.971 21 N -0.406 5.406 22 C -0.458 4.458 23 H 0.092 0.908 24 C -0.297 4.297 25 N -0.630 5.630 26 Si 0.951 3.049 27 H -0.219 1.219 28 H -0.227 1.227 29 H -0.188 1.188 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.231 0.769 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.149 0.851 39 H 0.241 0.759 40 H 0.181 0.819 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.190 0.810 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.352 -10.477 -6.720 13.974 hybrid contribution -0.696 0.408 -2.079 2.230 sum 5.656 -10.070 -8.799 14.520 Atomic orbital electron populations 1.21680 0.92094 1.02989 1.02709 1.22369 0.97466 0.98810 0.92373 0.90003 1.22403 0.82251 0.98612 0.98007 1.48426 1.12307 1.67228 1.07272 1.17617 0.83356 0.76513 0.85154 1.90788 1.83857 1.54823 1.16462 1.22164 0.96182 1.23213 0.94675 1.24207 0.90276 0.86298 0.94866 1.43418 1.06069 1.53378 1.11144 1.23018 1.07667 1.06334 0.73053 1.22538 0.92334 0.90604 0.90748 1.22404 0.99415 1.14351 0.95918 1.18971 0.89021 0.75992 0.88453 1.90757 1.88034 1.49030 1.17705 1.22805 0.99752 1.02265 0.79002 1.22197 0.94764 0.99070 0.93594 0.87629 1.21619 1.01633 0.97885 0.93171 1.20845 0.97834 0.92944 0.85527 1.42680 1.79504 1.09147 1.09253 1.20420 1.38071 0.96205 0.91105 0.90777 1.27084 1.02142 0.95362 1.05151 1.70969 1.49392 1.14215 1.28452 0.82654 0.75998 0.74362 0.71918 1.21905 1.22668 1.18794 0.91603 0.91730 0.91395 0.92125 0.90466 0.76884 0.88780 0.87786 0.85106 0.75871 0.81907 0.89811 0.88239 0.91485 0.92106 0.94618 0.96010 0.81019 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.31 71.98 0.67 -1.40 16 2 C -0.09 -1.66 3.09 -9.40 -0.03 -1.69 16 3 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 4 C 0.11 2.50 6.36 86.85 0.55 3.06 16 5 N -0.62 -15.85 3.33 -821.81 -2.73 -18.58 16 6 C 0.58 20.08 7.80 86.62 0.68 20.75 16 7 O -0.58 -26.33 15.91 14.85 0.24 -26.10 16 8 C -0.35 -10.27 6.05 -18.63 -0.11 -10.38 16 9 C 0.18 3.10 8.89 84.25 0.75 3.85 16 10 N -0.46 -4.83 2.97 -547.47 -1.63 -6.45 16 11 C 0.04 0.11 10.52 127.77 1.34 1.46 16 12 C 0.16 1.63 10.17 83.34 0.85 2.48 16 13 C -0.30 -6.13 10.01 22.34 0.22 -5.91 16 14 C 0.38 12.93 6.96 25.44 0.18 13.11 16 15 O -0.57 -25.94 16.44 13.31 0.22 -25.72 16 16 C 0.08 1.51 3.63 86.73 0.31 1.82 16 17 C -0.08 -1.38 2.45 -9.60 -0.02 -1.40 16 18 H 0.11 1.67 8.04 -2.39 -0.02 1.65 16 19 C -0.10 -2.45 4.72 30.60 0.14 -2.31 16 20 C 0.15 4.66 6.11 86.38 0.53 5.19 16 21 N -0.76 -33.18 5.60 -343.45 -1.92 -35.10 16 22 C -0.33 -16.17 9.99 84.04 0.84 -15.33 16 23 H 0.07 3.46 7.83 -2.91 -0.02 3.44 16 24 C -0.11 -5.64 5.50 84.86 0.47 -5.17 16 25 N -0.98 -57.68 13.70 21.65 0.30 -57.38 16 26 Si 1.12 46.98 29.92 68.60 2.05 49.04 16 27 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 29 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 0.92 8.08 -2.38 -0.02 0.90 16 33 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 34 H 0.08 1.64 7.99 -2.39 -0.02 1.62 16 35 H 0.22 2.85 2.74 -5.22 -0.01 2.84 16 36 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 37 H 0.10 0.27 7.96 -2.39 -0.02 0.25 16 38 H 0.13 -0.43 7.96 -2.38 -0.02 -0.45 16 39 H 0.22 -0.33 7.97 -2.91 -0.02 -0.35 16 40 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.08 1.46 6.32 -2.39 -0.02 1.45 16 42 H 0.10 1.34 6.82 -2.39 -0.02 1.33 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.50 8.06 -2.38 -0.02 1.48 16 45 H 0.04 0.94 7.49 -2.38 -0.02 0.92 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.36 16.71 6.50 -92.71 -0.60 16.11 16 48 H 0.24 14.28 6.77 -92.71 -0.63 13.66 16 Total: -1.00 -93.54 386.18 4.40 -89.15 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.51 Total: 23.04 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 7.37 Total: 8.11 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -5.99 Total: -117.52 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: 0.46 Total: -51.82 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.05 Total: 49.04 kcal Total: -93.54 4.40 -89.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104405833.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.635 kcal (2) G-P(sol) polarization free energy of solvation -93.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds