Wall clock time and date at job start Tue Mar 31 2020 17:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.65807 * 2 1 4 4 C 1.54594 * 110.99132 * 236.84027 * 2 1 3 5 5 N 1.48120 * 103.42242 * 204.37266 * 4 2 1 6 6 C 1.34775 * 127.03273 * 219.28572 * 5 4 2 7 7 O 1.21283 * 119.99850 * 179.69056 * 6 5 4 8 8 C 1.50696 * 120.00252 * 359.68838 * 6 5 4 9 9 C 1.50701 * 109.47355 * 179.97438 * 8 6 5 10 10 C 1.38835 * 120.35206 * 90.00152 * 9 8 6 11 11 C 1.38380 * 118.47905 * 179.97438 * 10 9 8 12 12 C 1.38918 * 119.11368 * 0.02562 * 11 10 9 13 13 O 1.35682 * 119.68380 * 179.97438 * 12 11 10 14 14 N 1.32242 * 120.63060 * 359.97438 * 12 11 10 15 15 C 1.31959 * 121.65338 * 359.97438 * 14 12 11 16 16 C 1.47487 * 105.93183 * 39.02806 * 5 4 2 17 17 C 1.54005 * 107.08189 * 334.77616 * 16 5 4 18 18 H 1.08994 * 110.32679 * 120.20183 * 17 16 5 19 19 C 1.53002 * 110.32516 * 242.31335 * 17 16 5 20 20 C 1.53002 * 109.47137 * 293.54642 * 19 17 16 21 21 N 1.46496 * 109.47198 * 180.02562 * 20 19 17 22 22 C 1.36936 * 120.00089 * 180.02562 * 21 20 19 23 23 H 1.08005 * 120.00132 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00029 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00384 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99878 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47175 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47303 * 119.99899 * 26 24 22 29 29 H 1.48506 * 109.47345 * 239.99640 * 26 24 22 30 30 H 1.08997 * 109.47476 * 296.81265 * 1 2 3 31 31 H 1.09003 * 109.46904 * 56.81198 * 1 2 3 32 32 H 1.09001 * 109.47182 * 176.80983 * 1 2 3 33 33 H 1.09006 * 110.61629 * 85.86503 * 4 2 1 34 34 H 1.08994 * 110.54955 * 322.85494 * 4 2 1 35 35 H 1.09004 * 109.47411 * 59.99635 * 8 6 5 36 36 H 1.09006 * 109.47259 * 299.99830 * 8 6 5 37 37 H 1.07991 * 120.76039 * 359.70277 * 10 9 8 38 38 H 1.08004 * 120.44231 * 179.97438 * 11 10 9 39 39 H 0.96695 * 113.99895 * 269.98148 * 13 12 11 40 40 H 1.08000 * 119.59033 * 180.02562 * 15 14 12 41 41 H 1.08995 * 109.91549 * 94.13802 * 16 5 4 42 42 H 1.09004 * 109.91091 * 215.41728 * 16 5 4 43 43 H 1.09001 * 109.47244 * 53.54866 * 19 17 16 44 44 H 1.08999 * 109.47082 * 173.54595 * 19 17 16 45 45 H 1.09001 * 109.47236 * 300.00229 * 20 19 17 46 46 H 1.08999 * 109.47174 * 60.00008 * 20 19 17 47 47 H 0.97002 * 120.00120 * 359.97438 * 21 20 19 48 48 H 0.96998 * 120.00866 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0838 -0.7895 -1.2083 5 7 3.4322 -1.2056 -0.7583 6 6 4.5594 -1.2405 -1.4963 7 8 5.6027 -1.6000 -0.9931 8 6 4.5234 -0.8329 -2.9466 9 6 5.9032 -0.9607 -3.5388 10 6 6.3067 -2.1520 -4.1267 11 6 7.5820 -2.2264 -4.6589 12 6 8.4104 -1.1136 -4.5869 13 8 9.6632 -1.1740 -5.1045 14 7 7.9898 0.0039 -4.0186 15 6 6.7792 0.1057 -3.5034 16 6 3.2903 -1.5680 0.6643 17 6 2.0775 -0.7915 1.2101 18 1 1.3221 -1.4829 1.5835 19 6 2.5153 0.1660 2.3202 20 6 3.0032 -0.6398 3.5259 21 7 3.4218 0.2770 4.5890 22 6 3.8992 -0.2194 5.7726 23 1 3.9668 -1.2869 5.9224 24 6 4.2964 0.6493 6.7797 25 7 4.2146 1.9502 6.5970 26 14 4.9470 -0.0278 8.3945 27 1 4.9390 -1.5121 8.3479 28 1 6.3357 0.4526 8.6092 29 1 4.0843 0.4377 9.5100 30 1 -0.3634 0.4635 0.9171 31 1 -0.3633 0.5626 -0.8601 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1526 -0.1480 -2.0869 34 1 1.4613 -1.6602 -1.4142 35 1 4.1891 0.2017 -3.0251 36 1 3.8336 -1.4796 -3.4889 37 1 5.6422 -3.0024 -4.1638 38 1 7.9288 -3.1378 -5.1233 39 1 10.3347 -1.4713 -4.4754 40 1 6.4700 1.0347 -3.0475 41 1 3.1179 -2.6401 0.7589 42 1 4.1895 -1.2843 1.2112 43 1 3.3237 0.7997 1.9556 44 1 1.6712 0.7886 2.6169 45 1 2.1948 -1.2736 3.8905 46 1 3.8472 -1.2624 3.2292 47 1 3.3615 1.2357 4.4543 48 1 4.4925 2.5573 7.3006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104427863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:43 Heat of formation + Delta-G solvation = -34.593130 kcal Electronic energy + Delta-G solvation = -27892.939326 eV Core-core repulsion = 23948.130094 eV Total energy + Delta-G solvation = -3944.809232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94074 -40.15520 -38.30464 -37.29224 -35.13510 -33.59922 -33.20914 -32.13486 -32.00634 -30.22932 -28.31022 -26.66877 -26.45298 -24.31818 -24.04711 -22.80362 -22.41647 -20.74645 -20.02344 -19.39180 -19.12265 -17.35120 -17.26282 -16.99503 -16.56050 -16.22426 -15.75228 -15.27061 -14.73033 -14.67412 -14.51542 -14.28241 -13.78553 -13.66344 -13.51559 -13.35980 -13.22941 -13.09960 -12.84686 -12.58963 -12.54204 -12.22070 -12.01403 -11.99002 -11.84466 -11.46071 -11.19452 -11.00967 -10.84758 -10.57316 -10.43372 -10.31464 -10.23939 -9.99284 -9.93385 -9.71340 -9.65125 -9.06852 -8.85169 -8.81001 -6.89342 -5.74279 -3.02752 0.64936 0.93776 2.46940 2.74246 3.20677 3.45165 3.50664 3.53036 3.56055 4.19776 4.26980 4.33104 4.37062 4.51118 4.55489 4.61814 4.67446 4.75735 4.90279 5.02254 5.07693 5.12142 5.18892 5.24723 5.30784 5.38851 5.47874 5.50488 5.59117 5.61727 5.68839 5.76410 5.84965 5.87351 5.95865 5.97655 6.02302 6.13056 6.18285 6.29572 6.37607 6.43118 6.85501 6.90228 7.16937 7.38557 7.63079 7.72783 8.01270 8.44886 9.55848 10.14341 10.48575 11.48897 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.002387 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.270726 B =11728.690434 C =13668.152349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.102 3.898 5 N -0.621 5.621 6 C 0.530 3.470 7 O -0.530 6.530 8 C -0.092 4.092 9 C -0.128 4.128 10 C -0.045 4.045 11 C -0.184 4.184 12 C 0.307 3.693 13 O -0.485 6.485 14 N -0.501 5.501 15 C 0.142 3.858 16 C 0.107 3.893 17 C -0.091 4.091 18 H 0.086 0.914 19 C -0.117 4.117 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.402 0.598 40 H 0.159 0.841 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -7.596 -27.043 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.104 0.896 4 C -0.021 4.021 5 N -0.355 5.355 6 C 0.318 3.682 7 O -0.406 6.406 8 C -0.132 4.132 9 C -0.130 4.130 10 C -0.071 4.071 11 C -0.205 4.205 12 C 0.129 3.871 13 O -0.293 6.293 14 N -0.219 5.219 15 C -0.015 4.015 16 C -0.015 4.015 17 C -0.111 4.111 18 H 0.105 0.895 19 C -0.155 4.155 20 C 0.024 3.976 21 N -0.378 5.378 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.212 4.212 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.259 0.741 40 H 0.176 0.824 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.216 0.784 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.409 -7.065 -27.210 28.318 hybrid contribution 0.050 -0.860 1.338 1.592 sum -3.360 -7.925 -25.871 27.266 Atomic orbital electron populations 1.21734 0.93722 1.02026 1.02362 1.22305 0.96165 0.99865 0.93955 0.89625 1.22618 0.83065 0.98672 0.97786 1.48821 1.08210 1.66343 1.12159 1.20083 0.82249 0.78177 0.87703 1.90773 1.29682 1.47163 1.72970 1.20550 0.95012 1.04790 0.92844 1.20303 0.96717 0.95473 1.00512 1.21341 0.95291 0.96882 0.93605 1.22053 0.95529 0.99385 1.03546 1.19196 0.87015 0.88586 0.92331 1.84752 1.15358 1.89800 1.39355 1.67173 1.17563 1.27060 1.10097 1.22373 0.87182 0.98422 0.93564 1.22250 0.99982 0.98810 0.80465 1.22155 0.96445 0.97466 0.95030 0.89534 1.21791 1.01098 0.97793 0.94785 1.20701 0.96184 0.92907 0.87851 1.42370 1.77272 1.05051 1.13111 1.19285 1.34192 0.92009 0.91388 0.91160 1.24747 1.02403 0.95325 0.98680 1.69666 1.54172 1.00847 1.33644 0.86116 0.78307 0.77922 0.83868 1.20549 1.21850 1.21864 0.91702 0.92527 0.92412 0.90252 0.90719 0.87441 0.87678 0.84443 0.84144 0.74062 0.82352 0.91687 0.89517 0.91862 0.91504 0.96476 0.96354 0.78350 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.17 37.16 0.34 -0.64 16 2 C -0.10 -0.88 3.19 -88.93 -0.28 -1.16 16 3 H 0.09 0.80 7.87 -51.93 -0.41 0.39 16 4 C 0.10 0.72 6.38 -2.31 -0.01 0.70 16 5 N -0.62 -6.62 3.29 -169.98 -0.56 -7.18 16 6 C 0.53 6.23 7.88 -10.99 -0.09 6.15 16 7 O -0.53 -8.80 16.37 5.56 0.09 -8.71 16 8 C -0.09 -0.68 4.79 -29.04 -0.14 -0.81 16 9 C -0.13 -1.20 4.39 -104.47 -0.46 -1.66 16 10 C -0.05 -0.39 9.85 -39.31 -0.39 -0.78 16 11 C -0.18 -1.66 10.04 -39.28 -0.39 -2.05 16 12 C 0.31 3.39 7.74 -17.12 -0.13 3.26 16 13 O -0.49 -4.60 13.56 -18.75 -0.25 -4.85 16 14 N -0.50 -6.32 10.39 -13.33 -0.14 -6.46 16 15 C 0.14 1.54 10.85 -17.57 -0.19 1.35 16 16 C 0.11 1.34 6.15 -2.98 -0.02 1.33 16 17 C -0.09 -1.04 2.61 -89.24 -0.23 -1.27 16 18 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 19 C -0.12 -1.79 4.53 -26.73 -0.12 -1.91 16 20 C 0.15 3.03 6.08 -4.04 -0.02 3.01 16 21 N -0.73 -19.07 5.60 -59.91 -0.34 -19.40 16 22 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 23 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 24 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 25 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 26 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.08 0.38 7.23 -51.93 -0.38 0.01 16 34 H 0.07 0.44 8.02 -51.93 -0.42 0.02 16 35 H 0.11 0.56 7.85 -51.93 -0.41 0.16 16 36 H 0.10 0.49 8.10 -51.93 -0.42 0.07 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.40 1.93 9.06 45.56 0.41 2.35 16 40 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.38 6.64 -51.93 -0.34 1.03 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.38 6.88 -51.93 -0.36 0.03 16 47 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -37.78 396.74 -8.72 -46.50 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.81 Total: 6.43 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.39 Total: -2.04 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.31 Total: -61.16 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.16 Total: -13.57 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.78 -8.72 -46.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104427863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.908 kcal (2) G-P(sol) polarization free energy of solvation -37.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds