Wall clock time and date at job start Tue Mar 31 2020 17:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.65807 * 2 1 4 4 C 1.54594 * 110.99132 * 236.84027 * 2 1 3 5 5 N 1.48120 * 103.42242 * 204.37266 * 4 2 1 6 6 C 1.34775 * 127.03273 * 219.28572 * 5 4 2 7 7 O 1.21283 * 119.99850 * 179.69056 * 6 5 4 8 8 C 1.50696 * 120.00252 * 359.68838 * 6 5 4 9 9 C 1.50701 * 109.47355 * 179.97438 * 8 6 5 10 10 C 1.38835 * 120.35206 * 90.00152 * 9 8 6 11 11 C 1.38380 * 118.47905 * 179.97438 * 10 9 8 12 12 C 1.38918 * 119.11368 * 0.02562 * 11 10 9 13 13 O 1.35682 * 119.68380 * 179.97438 * 12 11 10 14 14 N 1.32242 * 120.63060 * 359.97438 * 12 11 10 15 15 C 1.31959 * 121.65338 * 359.97438 * 14 12 11 16 16 C 1.47487 * 105.93183 * 39.02806 * 5 4 2 17 17 C 1.54005 * 107.08189 * 334.77616 * 16 5 4 18 18 H 1.08994 * 110.32679 * 120.20183 * 17 16 5 19 19 C 1.53002 * 110.32516 * 242.31335 * 17 16 5 20 20 C 1.53002 * 109.47137 * 293.54642 * 19 17 16 21 21 N 1.46496 * 109.47198 * 180.02562 * 20 19 17 22 22 C 1.36936 * 120.00089 * 180.02562 * 21 20 19 23 23 H 1.08005 * 120.00132 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00029 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00384 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99878 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47175 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47303 * 119.99899 * 26 24 22 29 29 H 1.48506 * 109.47345 * 239.99640 * 26 24 22 30 30 H 1.08997 * 109.47476 * 296.81265 * 1 2 3 31 31 H 1.09003 * 109.46904 * 56.81198 * 1 2 3 32 32 H 1.09001 * 109.47182 * 176.80983 * 1 2 3 33 33 H 1.09006 * 110.61629 * 85.86503 * 4 2 1 34 34 H 1.08994 * 110.54955 * 322.85494 * 4 2 1 35 35 H 1.09004 * 109.47411 * 59.99635 * 8 6 5 36 36 H 1.09006 * 109.47259 * 299.99830 * 8 6 5 37 37 H 1.07991 * 120.76039 * 359.70277 * 10 9 8 38 38 H 1.08004 * 120.44231 * 179.97438 * 11 10 9 39 39 H 0.96695 * 113.99895 * 269.98148 * 13 12 11 40 40 H 1.08000 * 119.59033 * 180.02562 * 15 14 12 41 41 H 1.08995 * 109.91549 * 94.13802 * 16 5 4 42 42 H 1.09004 * 109.91091 * 215.41728 * 16 5 4 43 43 H 1.09001 * 109.47244 * 53.54866 * 19 17 16 44 44 H 1.08999 * 109.47082 * 173.54595 * 19 17 16 45 45 H 1.09001 * 109.47236 * 300.00229 * 20 19 17 46 46 H 1.08999 * 109.47174 * 60.00008 * 20 19 17 47 47 H 0.97002 * 120.00120 * 359.97438 * 21 20 19 48 48 H 0.96998 * 120.00866 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0838 -0.7895 -1.2083 5 7 3.4322 -1.2056 -0.7583 6 6 4.5594 -1.2405 -1.4963 7 8 5.6027 -1.6000 -0.9931 8 6 4.5234 -0.8329 -2.9466 9 6 5.9032 -0.9607 -3.5388 10 6 6.3067 -2.1520 -4.1267 11 6 7.5820 -2.2264 -4.6589 12 6 8.4104 -1.1136 -4.5869 13 8 9.6632 -1.1740 -5.1045 14 7 7.9898 0.0039 -4.0186 15 6 6.7792 0.1057 -3.5034 16 6 3.2903 -1.5680 0.6643 17 6 2.0775 -0.7915 1.2101 18 1 1.3221 -1.4829 1.5835 19 6 2.5153 0.1660 2.3202 20 6 3.0032 -0.6398 3.5259 21 7 3.4218 0.2770 4.5890 22 6 3.8992 -0.2194 5.7726 23 1 3.9668 -1.2869 5.9224 24 6 4.2964 0.6493 6.7797 25 7 4.2146 1.9502 6.5970 26 14 4.9470 -0.0278 8.3945 27 1 4.9390 -1.5121 8.3479 28 1 6.3357 0.4526 8.6092 29 1 4.0843 0.4377 9.5100 30 1 -0.3634 0.4635 0.9171 31 1 -0.3633 0.5626 -0.8601 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1526 -0.1480 -2.0869 34 1 1.4613 -1.6602 -1.4142 35 1 4.1891 0.2017 -3.0251 36 1 3.8336 -1.4796 -3.4889 37 1 5.6422 -3.0024 -4.1638 38 1 7.9288 -3.1378 -5.1233 39 1 10.3347 -1.4713 -4.4754 40 1 6.4700 1.0347 -3.0475 41 1 3.1179 -2.6401 0.7589 42 1 4.1895 -1.2843 1.2112 43 1 3.3237 0.7997 1.9556 44 1 1.6712 0.7886 2.6169 45 1 2.1948 -1.2736 3.8905 46 1 3.8472 -1.2624 3.2292 47 1 3.3615 1.2357 4.4543 48 1 4.4925 2.5573 7.3006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104427863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:42 Heat of formation + Delta-G solvation = -64.257384 kcal Electronic energy + Delta-G solvation = -27894.225664 eV Core-core repulsion = 23948.130094 eV Total energy + Delta-G solvation = -3946.095570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68806 -40.98342 -39.21967 -38.03969 -36.86981 -34.66158 -34.18502 -33.44363 -32.71655 -31.77154 -29.34130 -27.80392 -27.11097 -25.87586 -24.75877 -24.19422 -23.35786 -21.99173 -20.88466 -20.25035 -19.82155 -19.17986 -18.10171 -17.99566 -17.36866 -16.98842 -16.70694 -16.56337 -15.98583 -15.78436 -15.50720 -15.35357 -15.13008 -14.96422 -14.52096 -14.34048 -14.20611 -14.04149 -13.71461 -13.53070 -13.28463 -13.18810 -13.01889 -12.88923 -12.72314 -12.69015 -12.63737 -12.42318 -12.29006 -12.08960 -11.91770 -11.60120 -11.44330 -11.21515 -11.07913 -10.96357 -10.80312 -10.45657 -9.78902 -9.68796 -9.04044 -7.99357 -5.28675 -0.06046 0.24466 1.43837 1.45564 1.55591 1.62587 1.96210 2.52605 2.53336 2.85061 3.34163 3.47831 3.58841 3.61479 3.68146 3.71855 3.92158 3.93850 4.01004 4.16096 4.28822 4.31840 4.34439 4.45955 4.52345 4.52525 4.59677 4.69211 4.73179 4.74867 4.77136 4.79845 4.93370 4.95269 5.00542 5.03582 5.19384 5.19955 5.26493 5.31596 5.37227 5.44073 5.46714 5.55462 5.62028 6.23714 6.57710 6.58960 6.90755 7.16103 7.29116 8.05527 8.28273 9.24656 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.002387 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.270726 B =11728.690434 C =13668.152349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 H 0.076 0.924 4 C 0.103 3.897 5 N -0.620 5.620 6 C 0.523 3.477 7 O -0.591 6.591 8 C -0.080 4.080 9 C -0.132 4.132 10 C -0.048 4.048 11 C -0.184 4.184 12 C 0.287 3.713 13 O -0.496 6.496 14 N -0.539 5.539 15 C 0.120 3.880 16 C 0.107 3.893 17 C -0.083 4.083 18 H 0.100 0.900 19 C -0.102 4.102 20 C 0.149 3.851 21 N -0.749 5.749 22 C -0.248 4.248 23 H 0.074 0.926 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.975 3.025 27 H -0.266 1.266 28 H -0.293 1.293 29 H -0.288 1.288 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.417 0.583 40 H 0.165 0.835 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.025 0.975 46 H 0.010 0.990 47 H 0.373 0.627 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 -9.084 -28.922 31.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.018 4.018 5 N -0.353 5.353 6 C 0.314 3.686 7 O -0.472 6.472 8 C -0.119 4.119 9 C -0.134 4.134 10 C -0.073 4.073 11 C -0.205 4.205 12 C 0.108 3.892 13 O -0.306 6.306 14 N -0.258 5.258 15 C -0.037 4.037 16 C -0.017 4.017 17 C -0.102 4.102 18 H 0.119 0.881 19 C -0.140 4.140 20 C 0.023 3.977 21 N -0.392 5.392 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.804 3.196 27 H -0.191 1.191 28 H -0.221 1.221 29 H -0.215 1.215 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.182 0.818 39 H 0.278 0.722 40 H 0.182 0.818 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.043 0.957 46 H 0.028 0.972 47 H 0.205 0.795 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.724 -8.580 -29.120 30.893 hybrid contribution 0.771 -0.432 1.914 2.108 sum -4.953 -9.012 -27.206 29.084 Atomic orbital electron populations 1.21709 0.91977 1.03076 1.02622 1.22283 0.97460 0.99080 0.92956 0.90557 1.22908 0.80902 1.00011 0.97973 1.48938 1.09646 1.65603 1.11149 1.20911 0.81419 0.77002 0.89272 1.90750 1.31938 1.50009 1.74476 1.20627 0.94634 1.07164 0.89507 1.20542 0.97512 0.95233 1.00150 1.21767 0.95514 0.97450 0.92605 1.22329 0.95502 0.99527 1.03115 1.19513 0.87755 0.89044 0.92857 1.84703 1.15583 1.90007 1.40262 1.67109 1.18746 1.28439 1.11492 1.22645 0.87313 0.99622 0.94081 1.22095 0.98428 0.99285 0.81859 1.22084 0.96227 0.97044 0.94874 0.88131 1.21628 1.00299 0.97856 0.94201 1.20890 0.95894 0.92714 0.88199 1.42632 1.77372 1.05345 1.13844 1.19685 1.33510 0.92293 0.92449 0.90816 1.25620 1.03364 0.95680 1.02322 1.69819 1.55582 1.02056 1.34658 0.85049 0.77184 0.77956 0.79437 1.19058 1.22053 1.21495 0.93094 0.90481 0.91172 0.86816 0.88221 0.84786 0.83758 0.81556 0.81804 0.72229 0.81750 0.91108 0.93959 0.93659 0.91289 0.95724 0.97186 0.79548 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.17 71.98 0.66 -0.73 16 2 C -0.10 -1.39 3.19 -9.70 -0.03 -1.42 16 3 H 0.08 1.25 7.87 -2.39 -0.02 1.23 16 4 C 0.10 1.01 6.38 86.61 0.55 1.56 16 5 N -0.62 -11.98 3.29 -810.08 -2.67 -14.65 16 6 C 0.52 11.55 7.88 87.66 0.69 12.24 16 7 O -0.59 -20.03 16.37 -3.04 -0.05 -20.08 16 8 C -0.08 -0.91 4.79 29.10 0.14 -0.77 16 9 C -0.13 -2.28 4.39 -19.77 -0.09 -2.37 16 10 C -0.05 -0.73 9.85 22.45 0.22 -0.51 16 11 C -0.18 -3.09 10.04 22.47 0.23 -2.87 16 12 C 0.29 6.36 7.74 84.79 0.66 7.02 16 13 O -0.50 -9.51 13.56 -90.00 -1.22 -10.73 16 14 N -0.54 -13.99 10.39 -308.95 -3.21 -17.20 16 15 C 0.12 2.62 10.85 84.63 0.92 3.54 16 16 C 0.11 2.64 6.15 86.53 0.53 3.17 16 17 C -0.08 -1.77 2.61 -9.90 -0.03 -1.80 16 18 H 0.10 1.92 7.85 -2.39 -0.02 1.90 16 19 C -0.10 -3.17 4.53 30.60 0.14 -3.03 16 20 C 0.15 6.13 6.08 86.38 0.53 6.65 16 21 N -0.75 -40.03 5.60 -343.45 -1.92 -41.95 16 22 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 23 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 24 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 25 N -0.97 -61.20 13.06 21.65 0.28 -60.92 16 26 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 28 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.57 8.11 -2.39 -0.02 0.55 16 33 H 0.11 0.42 7.23 -2.38 -0.02 0.40 16 34 H 0.10 0.59 8.02 -2.39 -0.02 0.57 16 35 H 0.13 0.86 7.85 -2.38 -0.02 0.84 16 36 H 0.14 0.56 8.10 -2.38 -0.02 0.54 16 37 H 0.17 1.47 8.06 -2.92 -0.02 1.45 16 38 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.42 4.19 9.06 -74.06 -0.67 3.52 16 40 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.42 6.64 -2.38 -0.02 1.41 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.01 0.44 6.88 -2.39 -0.02 0.42 16 47 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 48 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -86.50 396.74 -0.74 -87.24 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.41 Total: 25.81 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.42 Total: 2.90 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -7.52 Total: -134.72 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.27 Total: -30.81 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -86.50 -0.74 -87.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104427863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.983 kcal (2) G-P(sol) polarization free energy of solvation -86.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds