Wall clock time and date at job start Tue Mar 31 2020 17:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35423 * 116.99917 * 2 1 4 4 N 1.32228 * 119.80309 * 0.02562 * 3 2 1 5 5 C 1.31881 * 121.80263 * 179.97438 * 4 3 2 6 6 C 1.38352 * 121.18774 * 359.97438 * 5 4 3 7 7 C 1.38344 * 119.45671 * 359.76719 * 6 5 4 8 8 C 1.39994 * 118.34340 * 0.47035 * 7 6 5 9 9 C 1.47529 * 120.58980 * 179.80132 * 8 7 6 10 10 O 1.21595 * 119.99607 * 225.90314 * 9 8 7 11 11 N 1.34774 * 120.00173 * 45.91252 * 9 8 7 12 12 C 1.47022 * 125.64590 * 355.11962 * 11 9 8 13 13 C 1.54330 * 107.39881 * 178.90124 * 12 11 9 14 14 H 1.09000 * 110.72037 * 96.24517 * 13 12 11 15 15 C 1.52998 * 110.71672 * 219.51760 * 13 12 11 16 16 C 1.55400 * 102.82707 * 337.97697 * 13 12 11 17 17 H 1.09007 * 110.88896 * 277.26236 * 16 13 12 18 18 C 1.52998 * 111.06934 * 153.49011 * 16 13 12 19 19 C 1.53001 * 109.47191 * 181.20628 * 18 16 13 20 20 N 1.46494 * 109.47501 * 180.02562 * 19 18 16 21 21 C 1.36938 * 120.00635 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99127 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00305 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99646 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00071 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46809 * 90.00194 * 25 23 21 27 27 H 1.48499 * 109.47139 * 209.99692 * 25 23 21 28 28 H 1.48493 * 109.47038 * 330.00207 * 25 23 21 29 29 C 1.47426 * 125.65023 * 175.16232 * 11 9 8 30 30 H 1.09000 * 109.47371 * 300.00257 * 1 2 3 31 31 H 1.09007 * 109.46912 * 60.00269 * 1 2 3 32 32 H 1.09003 * 109.47157 * 179.97438 * 1 2 3 33 33 H 1.08003 * 119.40638 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.27508 * 180.02562 * 6 5 4 35 35 H 1.07996 * 120.82964 * 180.25397 * 7 6 5 36 36 H 1.08996 * 109.88144 * 298.38959 * 12 11 9 37 37 H 1.08993 * 109.88714 * 59.40613 * 12 11 9 38 38 H 1.08997 * 109.47018 * 58.55056 * 15 13 12 39 39 H 1.09001 * 109.46662 * 178.54220 * 15 13 12 40 40 H 1.08997 * 109.47618 * 298.54414 * 15 13 12 41 41 H 1.08992 * 109.47237 * 301.20482 * 18 16 13 42 42 H 1.09003 * 109.47553 * 61.20852 * 18 16 13 43 43 H 1.08999 * 109.47277 * 300.00056 * 19 18 16 44 44 H 1.09004 * 109.47171 * 59.99480 * 19 18 16 45 45 H 0.97002 * 120.00106 * 359.97438 * 20 19 18 46 46 H 0.97006 * 119.99865 * 180.02562 * 24 23 21 47 47 H 1.09010 * 110.36382 * 322.93225 * 29 11 9 48 48 H 1.08995 * 110.36527 * 85.24906 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 0.0005 5 6 1.8772 3.5083 0.0010 6 6 3.2526 3.6575 0.0016 7 6 4.0588 2.5332 0.0065 8 6 3.4449 1.2751 0.0006 9 6 4.2570 0.0435 0.0011 10 8 3.9832 -0.8655 -0.7587 11 7 5.3023 -0.0743 0.8437 12 6 5.8044 0.9788 1.7384 13 6 6.9892 0.3858 2.5298 14 1 7.9367 0.6443 2.0571 15 6 6.9606 0.8608 3.9839 16 6 6.7313 -1.1441 2.4423 17 1 6.0150 -1.4615 3.2002 18 6 8.0383 -1.9301 2.5640 19 6 7.7463 -3.4271 2.4431 20 7 8.9976 -4.1798 2.5602 21 6 8.9845 -5.5469 2.4816 22 1 8.0514 -6.0701 2.3328 23 6 10.1703 -6.2599 2.5921 24 7 10.1575 -7.5738 2.5159 25 14 11.7842 -5.3547 2.8473 26 1 12.0361 -5.1924 4.3018 27 1 12.8910 -6.1346 2.2373 28 1 11.7086 -4.0176 2.2058 29 6 6.1320 -1.2800 1.0204 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2485 4.3866 0.0019 34 1 3.6934 4.6434 0.0024 35 1 5.1350 2.6239 0.0112 36 1 6.1412 1.8338 1.1522 37 1 5.0171 1.2879 2.4258 38 1 6.0184 0.5639 4.4446 39 1 7.7896 0.4102 4.5296 40 1 7.0534 1.9464 4.0135 41 1 8.7196 -1.6275 1.7688 42 1 8.4961 -1.7263 3.5319 43 1 7.0650 -3.7298 3.2383 44 1 7.2884 -3.6311 1.4752 45 1 9.8358 -3.7098 2.6928 46 1 10.9861 -8.0722 2.5935 47 1 5.5167 -2.1772 0.9520 48 1 6.9265 -1.3062 0.2747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104619635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:59 Heat of formation + Delta-G solvation = -18.355152 kcal Electronic energy + Delta-G solvation = -28554.927715 eV Core-core repulsion = 24610.822615 eV Total energy + Delta-G solvation = -3944.105100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.32174 -39.98521 -38.25242 -37.98012 -35.34484 -33.67455 -32.77709 -32.11037 -31.29010 -30.52586 -27.86098 -27.32049 -26.71904 -25.09203 -23.84093 -23.29503 -22.14137 -20.89831 -20.25606 -20.04177 -18.70207 -17.61617 -17.54308 -17.44774 -16.43749 -16.16423 -15.76023 -15.57139 -14.81296 -14.65663 -14.42205 -14.40352 -14.11934 -13.81090 -13.69076 -13.56686 -13.23908 -13.16344 -12.89196 -12.75453 -12.52825 -12.39471 -12.08021 -11.90361 -11.60277 -11.56518 -11.38717 -11.22498 -10.89929 -10.70434 -10.55691 -10.46492 -10.36481 -10.25611 -10.04000 -9.84690 -9.55749 -8.97182 -8.86333 -8.74135 -7.19988 -5.73506 -3.09024 0.37470 0.79744 2.49399 2.70274 2.78096 3.33624 3.38829 3.40995 3.46646 3.79399 4.15340 4.24199 4.26979 4.49783 4.54770 4.61525 4.62370 4.71082 4.96217 4.96913 5.01330 5.02092 5.16375 5.18507 5.24099 5.32339 5.34740 5.41567 5.46639 5.56087 5.57337 5.61287 5.69786 5.80931 5.86522 5.87408 5.92146 5.96439 6.02963 6.16214 6.17335 6.31750 6.76120 6.79265 6.82912 7.27385 7.37996 8.00942 8.03586 8.45556 9.24839 9.97016 10.16794 11.45056 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.002388 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.595101 B =11724.094830 C =12660.980149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.286 6.286 3 C 0.367 3.633 4 N -0.542 5.542 5 C 0.160 3.840 6 C -0.217 4.217 7 C -0.014 4.014 8 C -0.197 4.197 9 C 0.583 3.417 10 O -0.516 6.516 11 N -0.614 5.614 12 C 0.102 3.898 13 C -0.101 4.101 14 H 0.088 0.912 15 C -0.141 4.141 16 C -0.090 4.090 17 H 0.088 0.912 18 C -0.117 4.117 19 C 0.155 3.845 20 N -0.757 5.757 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.002 3.998 24 N -0.935 5.935 25 Si 0.886 3.114 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.111 3.889 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.084 0.916 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.118 29.772 -1.676 33.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.191 6.191 3 C 0.187 3.813 4 N -0.266 5.266 5 C 0.003 3.997 6 C -0.238 4.238 7 C -0.040 4.040 8 C -0.203 4.203 9 C 0.370 3.630 10 O -0.391 6.391 11 N -0.349 5.349 12 C -0.021 4.021 13 C -0.120 4.120 14 H 0.107 0.893 15 C -0.198 4.198 16 C -0.110 4.110 17 H 0.106 0.894 18 C -0.156 4.156 19 C 0.028 3.972 20 N -0.403 5.403 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.194 4.194 24 N -0.583 5.583 25 Si 0.717 3.283 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.010 4.010 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.251 28.646 -2.184 33.511 hybrid contribution 1.864 0.821 0.176 2.044 sum -15.388 29.467 -2.008 33.304 Atomic orbital electron populations 1.22962 0.76829 1.03537 1.02383 1.86392 1.23073 1.23527 1.86071 1.19744 0.87873 0.85150 0.88551 1.67451 1.40277 0.98665 1.20226 1.22644 0.93097 0.93696 0.90277 1.21933 0.94737 0.99847 1.07246 1.21759 1.01039 0.90198 0.90958 1.19872 0.91628 0.95165 1.13624 1.17398 0.79136 0.86357 0.80112 1.90850 1.68885 1.40628 1.38735 1.48375 1.30699 1.15376 1.40419 1.22296 0.96658 0.90671 0.92507 1.22344 0.97802 0.95433 0.96409 0.89330 1.21744 1.02653 1.00851 0.94600 1.22463 0.98289 0.93839 0.96368 0.89406 1.21724 0.95358 0.96161 1.02327 1.20664 0.89555 0.88370 0.98652 1.42714 1.03698 1.04278 1.89601 1.19083 0.95570 0.80797 1.41835 0.89228 1.24692 0.97317 0.95269 1.02090 1.69709 1.26585 1.04746 1.57272 0.86516 0.84876 0.79054 0.77900 1.21124 1.21762 1.20349 1.22424 0.94075 0.87768 0.96749 0.92146 0.92068 0.88182 0.81837 0.83789 0.83440 0.91524 0.91311 0.92349 0.91619 0.92498 0.91643 0.91304 0.95553 0.95411 0.80744 0.93096 0.89737 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.29 -3.76 9.46 -29.44 -0.28 -4.04 16 3 C 0.37 4.44 7.48 -16.61 -0.12 4.31 16 4 N -0.54 -5.40 9.21 -12.99 -0.12 -5.52 16 5 C 0.16 1.07 11.17 -17.49 -0.20 0.87 16 6 C -0.22 -1.25 10.09 -39.50 -0.40 -1.64 16 7 C -0.01 -0.11 8.66 -38.88 -0.34 -0.44 16 8 C -0.20 -2.28 5.46 -104.69 -0.57 -2.85 16 9 C 0.58 8.33 7.18 -12.47 -0.09 8.24 16 10 O -0.52 -9.53 16.73 -6.19 -0.10 -9.63 16 11 N -0.61 -7.44 3.33 -171.75 -0.57 -8.01 16 12 C 0.10 0.86 5.20 -3.06 -0.02 0.84 16 13 C -0.10 -0.87 3.03 -88.65 -0.27 -1.14 16 14 H 0.09 0.73 8.04 -51.93 -0.42 0.31 16 15 C -0.14 -1.03 9.14 37.16 0.34 -0.69 16 16 C -0.09 -1.03 2.53 -88.34 -0.22 -1.25 16 17 H 0.09 1.03 8.04 -51.92 -0.42 0.61 16 18 C -0.12 -1.65 4.85 -26.73 -0.13 -1.77 16 19 C 0.15 2.96 6.11 -4.04 -0.02 2.94 16 20 N -0.76 -18.25 5.41 -59.91 -0.32 -18.58 16 21 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 22 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 23 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 24 N -0.93 -29.92 13.97 55.49 0.78 -29.14 16 25 Si 0.89 22.30 27.74 -169.99 -4.71 17.59 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 29 C 0.11 1.47 5.55 -2.53 -0.01 1.45 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.11 -51.92 -0.42 0.08 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.16 0.53 8.06 -52.48 -0.42 0.10 16 34 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 35 H 0.15 0.84 5.85 -52.49 -0.31 0.53 16 36 H 0.07 0.42 5.94 -51.93 -0.31 0.11 16 37 H 0.07 0.54 7.82 -51.93 -0.41 0.14 16 38 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.03 0.55 7.46 -51.93 -0.39 0.17 16 45 H 0.36 8.35 5.53 -40.82 -0.23 8.13 16 46 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 47 H 0.08 1.27 8.01 -51.92 -0.42 0.86 16 48 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -37.15 389.70 -8.26 -45.40 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.54 Total: 3.07 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.26 Total: 3.00 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.24 Total: -61.26 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.38 Total: -13.67 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.15 -8.26 -45.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104619635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.049 kcal (2) G-P(sol) polarization free energy of solvation -37.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds