Wall clock time and date at job start Tue Mar 31 2020 17:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35423 * 116.99917 * 2 1 4 4 N 1.32228 * 119.80309 * 0.02562 * 3 2 1 5 5 C 1.31881 * 121.80263 * 179.97438 * 4 3 2 6 6 C 1.38352 * 121.18774 * 359.97438 * 5 4 3 7 7 C 1.38344 * 119.45671 * 359.76719 * 6 5 4 8 8 C 1.39994 * 118.34340 * 0.47035 * 7 6 5 9 9 C 1.47529 * 120.58980 * 179.80132 * 8 7 6 10 10 O 1.21595 * 119.99607 * 225.90314 * 9 8 7 11 11 N 1.34774 * 120.00173 * 45.91252 * 9 8 7 12 12 C 1.47022 * 125.64590 * 355.11962 * 11 9 8 13 13 C 1.54330 * 107.39881 * 178.90124 * 12 11 9 14 14 H 1.09000 * 110.72037 * 96.24517 * 13 12 11 15 15 C 1.52998 * 110.71672 * 219.51760 * 13 12 11 16 16 C 1.55400 * 102.82707 * 337.97697 * 13 12 11 17 17 H 1.09007 * 110.88896 * 277.26236 * 16 13 12 18 18 C 1.52998 * 111.06934 * 153.49011 * 16 13 12 19 19 C 1.53001 * 109.47191 * 181.20628 * 18 16 13 20 20 N 1.46494 * 109.47501 * 180.02562 * 19 18 16 21 21 C 1.36938 * 120.00635 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99127 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00305 * 179.97438 * 21 20 19 24 24 N 1.31617 * 119.99646 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00071 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46809 * 90.00194 * 25 23 21 27 27 H 1.48499 * 109.47139 * 209.99692 * 25 23 21 28 28 H 1.48493 * 109.47038 * 330.00207 * 25 23 21 29 29 C 1.47426 * 125.65023 * 175.16232 * 11 9 8 30 30 H 1.09000 * 109.47371 * 300.00257 * 1 2 3 31 31 H 1.09007 * 109.46912 * 60.00269 * 1 2 3 32 32 H 1.09003 * 109.47157 * 179.97438 * 1 2 3 33 33 H 1.08003 * 119.40638 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.27508 * 180.02562 * 6 5 4 35 35 H 1.07996 * 120.82964 * 180.25397 * 7 6 5 36 36 H 1.08996 * 109.88144 * 298.38959 * 12 11 9 37 37 H 1.08993 * 109.88714 * 59.40613 * 12 11 9 38 38 H 1.08997 * 109.47018 * 58.55056 * 15 13 12 39 39 H 1.09001 * 109.46662 * 178.54220 * 15 13 12 40 40 H 1.08997 * 109.47618 * 298.54414 * 15 13 12 41 41 H 1.08992 * 109.47237 * 301.20482 * 18 16 13 42 42 H 1.09003 * 109.47553 * 61.20852 * 18 16 13 43 43 H 1.08999 * 109.47277 * 300.00056 * 19 18 16 44 44 H 1.09004 * 109.47171 * 59.99480 * 19 18 16 45 45 H 0.97002 * 120.00106 * 359.97438 * 20 19 18 46 46 H 0.97006 * 119.99865 * 180.02562 * 24 23 21 47 47 H 1.09010 * 110.36382 * 322.93225 * 29 11 9 48 48 H 1.08995 * 110.36527 * 85.24906 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 0.0005 5 6 1.8772 3.5083 0.0010 6 6 3.2526 3.6575 0.0016 7 6 4.0588 2.5332 0.0065 8 6 3.4449 1.2751 0.0006 9 6 4.2570 0.0435 0.0011 10 8 3.9832 -0.8655 -0.7587 11 7 5.3023 -0.0743 0.8437 12 6 5.8044 0.9788 1.7384 13 6 6.9892 0.3858 2.5298 14 1 7.9367 0.6443 2.0571 15 6 6.9606 0.8608 3.9839 16 6 6.7313 -1.1441 2.4423 17 1 6.0150 -1.4615 3.2002 18 6 8.0383 -1.9301 2.5640 19 6 7.7463 -3.4271 2.4431 20 7 8.9976 -4.1798 2.5602 21 6 8.9845 -5.5469 2.4816 22 1 8.0514 -6.0701 2.3328 23 6 10.1703 -6.2599 2.5921 24 7 10.1575 -7.5738 2.5159 25 14 11.7842 -5.3547 2.8473 26 1 12.0361 -5.1924 4.3018 27 1 12.8910 -6.1346 2.2373 28 1 11.7086 -4.0176 2.2058 29 6 6.1320 -1.2800 1.0204 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2485 4.3866 0.0019 34 1 3.6934 4.6434 0.0024 35 1 5.1350 2.6239 0.0112 36 1 6.1412 1.8338 1.1522 37 1 5.0171 1.2879 2.4258 38 1 6.0184 0.5639 4.4446 39 1 7.7896 0.4102 4.5296 40 1 7.0534 1.9464 4.0135 41 1 8.7196 -1.6275 1.7688 42 1 8.4961 -1.7263 3.5319 43 1 7.0650 -3.7298 3.2383 44 1 7.2884 -3.6311 1.4752 45 1 9.8358 -3.7098 2.6928 46 1 10.9861 -8.0722 2.5935 47 1 5.5167 -2.1772 0.9520 48 1 6.9265 -1.3062 0.2747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104619635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:58 Heat of formation + Delta-G solvation = -45.850577 kcal Electronic energy + Delta-G solvation = -28556.120006 eV Core-core repulsion = 24610.822615 eV Total energy + Delta-G solvation = -3945.297391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.07872 -40.86788 -39.05559 -38.96108 -37.04692 -34.85460 -33.82092 -33.40301 -32.16675 -31.86344 -29.00229 -28.20592 -27.44719 -26.21695 -25.02361 -23.97765 -23.69956 -22.17268 -21.13276 -20.96359 -19.65355 -19.40175 -18.42345 -18.25824 -17.28017 -17.08447 -16.66799 -16.53257 -16.20288 -15.90598 -15.75814 -15.38390 -15.13157 -14.84062 -14.63193 -14.48412 -14.38283 -14.20815 -13.98768 -13.87281 -13.57069 -13.32989 -13.22502 -12.93743 -12.78375 -12.65466 -12.51354 -12.28989 -12.26405 -12.05737 -11.84660 -11.66089 -11.61505 -11.36025 -11.22140 -11.02290 -10.97059 -10.66100 -9.80070 -9.56008 -9.32071 -8.04175 -5.39003 -0.27820 0.20021 1.37291 1.43070 1.50533 1.52972 1.86888 2.03115 2.48472 2.68531 3.14732 3.26631 3.33961 3.46900 3.56206 3.71566 3.78296 3.92887 3.95014 4.15938 4.24373 4.27589 4.33137 4.34448 4.41704 4.42755 4.50433 4.55226 4.61892 4.63787 4.66955 4.77512 4.86617 4.88985 4.91154 5.01741 5.06192 5.14252 5.18228 5.27089 5.33496 5.40515 5.41637 5.53413 5.73381 6.12958 6.19703 6.38442 6.71171 6.99421 7.06619 7.81589 8.03323 9.17665 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.002388 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.595101 B =11724.094830 C =12660.980149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.323 6.323 3 C 0.340 3.660 4 N -0.556 5.556 5 C 0.158 3.842 6 C -0.196 4.196 7 C -0.009 4.009 8 C -0.224 4.224 9 C 0.577 3.423 10 O -0.578 6.578 11 N -0.612 5.612 12 C 0.098 3.902 13 C -0.089 4.089 14 H 0.103 0.897 15 C -0.138 4.138 16 C -0.082 4.082 17 H 0.083 0.917 18 C -0.102 4.102 19 C 0.150 3.850 20 N -0.758 5.758 21 C -0.242 4.242 22 H 0.048 0.952 23 C -0.069 4.069 24 N -0.986 5.986 25 Si 0.965 3.035 26 H -0.273 1.273 27 H -0.296 1.296 28 H -0.246 1.246 29 C 0.108 3.892 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.203 0.797 34 H 0.189 0.811 35 H 0.171 0.829 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.019 0.981 44 H 0.013 0.987 45 H 0.369 0.631 46 H 0.259 0.741 47 H 0.049 0.951 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.646 35.473 -0.642 38.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.161 3.839 4 N -0.280 5.280 5 C 0.001 3.999 6 C -0.216 4.216 7 C -0.034 4.034 8 C -0.230 4.230 9 C 0.366 3.634 10 O -0.458 6.458 11 N -0.344 5.344 12 C -0.023 4.023 13 C -0.108 4.108 14 H 0.121 0.879 15 C -0.196 4.196 16 C -0.102 4.102 17 H 0.102 0.898 18 C -0.140 4.140 19 C 0.024 3.976 20 N -0.404 5.404 21 C -0.373 4.373 22 H 0.066 0.934 23 C -0.261 4.261 24 N -0.637 5.637 25 Si 0.791 3.209 26 H -0.199 1.199 27 H -0.222 1.222 28 H -0.170 1.170 29 C -0.014 4.014 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.219 0.781 34 H 0.206 0.794 35 H 0.189 0.811 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.037 0.963 44 H 0.032 0.968 45 H 0.203 0.797 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.795 34.430 -1.116 37.897 hybrid contribution 1.258 -0.918 -0.164 1.566 sum -14.537 33.513 -1.281 36.552 Atomic orbital electron populations 1.23088 0.75487 1.04384 1.02803 1.86339 1.24763 1.25171 1.86632 1.19967 0.88332 0.85421 0.90156 1.67500 1.40573 0.99191 1.20778 1.23458 0.94543 0.93546 0.88321 1.22410 0.94027 1.00963 1.04185 1.22078 1.02399 0.89062 0.89907 1.19836 0.91269 0.95321 1.16579 1.17970 0.79278 0.86772 0.79394 1.90798 1.70535 1.43024 1.41406 1.48450 1.29950 1.15839 1.40175 1.22591 0.96850 0.90386 0.92486 1.22340 0.98462 0.92199 0.97759 0.87889 1.21744 1.02372 1.02384 0.93082 1.22343 0.96745 0.96354 0.94771 0.89844 1.21578 0.96815 0.92078 1.03497 1.20839 0.87583 0.91728 0.97478 1.42687 1.05710 1.02616 1.89398 1.19039 0.94172 0.83145 1.40943 0.93402 1.25663 1.01893 0.96187 1.02309 1.69918 1.27742 1.06991 1.59022 0.85267 0.78497 0.78757 0.78402 1.19914 1.22246 1.17038 1.22330 0.93632 0.87435 0.98022 0.91402 0.91821 0.87228 0.78056 0.79373 0.81143 0.88281 0.90265 0.92775 0.91851 0.90070 0.90759 0.89684 0.96312 0.96846 0.79739 0.93249 0.93220 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.38 113.37 1.18 1.88 16 2 O -0.32 -9.17 9.46 -76.20 -0.72 -9.89 16 3 C 0.34 8.38 7.48 85.13 0.64 9.01 16 4 N -0.56 -10.41 9.21 -308.02 -2.84 -13.24 16 5 C 0.16 1.54 11.17 84.71 0.95 2.49 16 6 C -0.20 -1.31 10.09 22.32 0.23 -1.09 16 7 C -0.01 -0.11 8.66 22.72 0.20 0.09 16 8 C -0.22 -5.10 5.46 -19.91 -0.11 -5.21 16 9 C 0.58 17.18 7.18 86.69 0.62 17.81 16 10 O -0.58 -23.27 16.73 6.96 0.12 -23.16 16 11 N -0.61 -14.73 3.33 -815.56 -2.71 -17.45 16 12 C 0.10 1.36 5.20 86.73 0.45 1.81 16 13 C -0.09 -1.22 3.03 -9.52 -0.03 -1.25 16 14 H 0.10 1.20 8.04 -2.39 -0.02 1.18 16 15 C -0.14 -1.46 9.14 71.98 0.66 -0.81 16 16 C -0.08 -1.80 2.53 -9.32 -0.02 -1.82 16 17 H 0.08 1.92 8.04 -2.38 -0.02 1.90 16 18 C -0.10 -2.68 4.85 30.59 0.15 -2.53 16 19 C 0.15 5.83 6.11 86.38 0.53 6.36 16 20 N -0.76 -36.43 5.41 -343.46 -1.86 -38.28 16 21 C -0.24 -14.48 10.47 84.03 0.88 -13.59 16 22 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 23 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 24 N -0.99 -65.16 13.97 21.65 0.30 -64.86 16 25 Si 0.96 45.75 27.74 68.60 1.90 47.65 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 29 C 0.11 2.95 5.55 86.85 0.48 3.44 16 30 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 31 H 0.06 1.12 8.11 -2.38 -0.02 1.10 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 33 H 0.20 0.31 8.06 -2.91 -0.02 0.28 16 34 H 0.19 -0.36 8.06 -2.91 -0.02 -0.38 16 35 H 0.17 1.15 5.85 -2.91 -0.02 1.14 16 36 H 0.10 0.77 5.94 -2.39 -0.01 0.76 16 37 H 0.08 0.99 7.82 -2.39 -0.02 0.97 16 38 H 0.05 0.64 8.13 -2.39 -0.02 0.62 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.01 0.56 7.46 -2.39 -0.02 0.55 16 45 H 0.37 16.31 5.53 -92.71 -0.51 15.80 16 46 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 47 H 0.05 1.67 8.01 -2.38 -0.02 1.65 16 48 H 0.07 1.92 8.00 -2.39 -0.02 1.90 16 Total: -1.00 -88.51 389.70 1.84 -86.67 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.39 Total: 19.73 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 7.26 Total: 12.82 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -7.10 Total: -133.83 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.60 Total: -33.05 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Total: -88.51 1.84 -86.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104619635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.822 kcal (2) G-P(sol) polarization free energy of solvation -88.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds