Wall clock time and date at job start Tue Mar 31 2020 17:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.29300 * 2 1 4 4 C 1.54003 * 110.32893 * 237.86020 * 2 1 3 5 5 N 1.47483 * 107.08996 * 242.31453 * 4 2 1 6 6 C 1.34773 * 127.03752 * 154.51161 * 5 4 2 7 7 O 1.21682 * 120.00057 * 179.74722 * 6 5 4 8 8 C 1.46726 * 119.99852 * 0.03003 * 6 5 4 9 9 O 1.35346 * 126.64251 * 359.40623 * 8 6 5 10 10 C 1.33660 * 107.68180 * 179.87763 * 9 8 6 11 11 N 1.30613 * 109.15642 * 0.39720 * 10 9 8 12 12 C 1.33695 * 108.99476 * 359.75438 * 11 10 9 13 13 C 1.50698 * 126.27229 * 180.02562 * 12 11 10 14 14 C 1.53002 * 117.50302 * 8.60147 * 13 12 11 15 15 C 1.52997 * 117.50140 * 299.97290 * 13 12 11 16 16 C 1.48122 * 105.92882 * 334.77985 * 5 4 2 17 17 C 1.54599 * 103.42652 * 39.02308 * 16 5 4 18 18 H 1.08994 * 110.57695 * 81.16770 * 17 16 5 19 19 C 1.52998 * 110.83388 * 204.44874 * 17 16 5 20 20 C 1.52993 * 109.47143 * 288.56129 * 19 17 16 21 21 N 1.46499 * 109.47551 * 180.02562 * 20 19 17 22 22 C 1.36932 * 120.00331 * 179.97438 * 21 20 19 23 23 H 1.07997 * 120.00061 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00142 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99852 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00243 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47082 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47309 * 120.00005 * 26 24 22 29 29 H 1.48499 * 109.47344 * 240.00148 * 26 24 22 30 30 H 1.09000 * 109.47426 * 180.68628 * 1 2 3 31 31 H 1.09003 * 109.47007 * 300.68317 * 1 2 3 32 32 H 1.09003 * 109.47113 * 60.67941 * 1 2 3 33 33 H 1.09003 * 109.91359 * 122.94889 * 4 2 1 34 34 H 1.09002 * 110.06579 * 1.76442 * 4 2 1 35 35 H 1.08008 * 125.42256 * 180.12809 * 10 9 8 36 36 H 1.09009 * 115.54913 * 154.30235 * 13 12 11 37 37 H 1.09006 * 117.49643 * 359.97438 * 14 13 12 38 38 H 1.08993 * 117.50172 * 145.02054 * 14 13 12 39 39 H 1.08994 * 117.50024 * 214.97628 * 15 13 12 40 40 H 1.09000 * 117.49953 * 359.97438 * 15 13 12 41 41 H 1.08994 * 110.66239 * 157.50975 * 16 5 4 42 42 H 1.08997 * 110.65901 * 280.62509 * 16 5 4 43 43 H 1.09006 * 109.46913 * 48.56172 * 19 17 16 44 44 H 1.09002 * 109.46765 * 168.55873 * 19 17 16 45 45 H 1.09006 * 109.47251 * 299.99836 * 20 19 17 46 46 H 1.09002 * 109.47499 * 60.00193 * 20 19 17 47 47 H 0.97004 * 119.99434 * 359.97438 * 21 20 19 48 48 H 0.96997 * 120.00276 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8297 -1.9204 -0.7102 6 6 3.0644 -3.0861 -1.3446 7 8 3.7203 -3.9541 -0.7997 8 6 2.5342 -3.3060 -2.6950 9 8 1.7880 -2.4409 -3.4206 10 6 1.5151 -3.0237 -4.5921 11 7 2.0542 -4.2132 -4.6149 12 6 2.6927 -4.4238 -3.4593 13 6 3.4495 -5.6683 -3.0728 14 6 3.6734 -6.7244 -4.1570 15 6 2.6706 -6.9845 -3.0310 16 6 3.2815 -1.5369 0.6473 17 6 2.0692 -0.7720 1.2264 18 1 1.3209 -1.4691 1.6032 19 6 2.5113 0.1968 2.3250 20 6 2.9217 -0.5949 3.5682 21 7 3.3444 0.3327 4.6204 22 6 3.7578 -0.1501 5.8332 23 1 3.7719 -1.2146 6.0144 24 6 4.1589 0.7289 6.8300 25 7 4.1413 2.0264 6.6095 26 14 4.7236 0.0703 8.4843 27 1 4.6499 -1.4129 8.4779 28 1 6.1241 0.4958 8.7346 29 1 3.8450 0.6044 9.5558 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5033 -0.8960 33 1 2.7166 -0.1222 -1.8111 34 1 1.2353 -1.1173 -1.8376 35 1 0.9370 -2.5830 -5.3909 36 1 4.2402 -5.5278 -2.3357 37 1 3.2730 -6.5192 -5.1498 38 1 4.6115 -7.2788 -4.1334 39 1 2.9490 -7.7101 -2.2669 40 1 1.6106 -6.9502 -3.2828 41 1 3.4980 -2.4222 1.2451 42 1 4.1540 -0.8858 0.5926 43 1 3.3590 0.7840 1.9719 44 1 1.6861 0.8637 2.5748 45 1 2.0739 -1.1821 3.9213 46 1 3.7468 -1.2618 3.3184 47 1 3.3314 1.2889 4.4578 48 1 4.4211 2.6406 7.3061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104673557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:28 Heat of formation + Delta-G solvation = 23.406855 kcal Electronic energy + Delta-G solvation = -28423.899363 eV Core-core repulsion = 24481.605200 eV Total energy + Delta-G solvation = -3942.294164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.83089 -40.24694 -38.33850 -37.58898 -35.21850 -34.76501 -33.31147 -32.10460 -31.02244 -30.11433 -27.42057 -26.68025 -24.98283 -24.12267 -23.62156 -22.61993 -22.41955 -21.09761 -20.81452 -20.16114 -20.00443 -17.84749 -17.32072 -17.16029 -17.00970 -16.19392 -15.82138 -15.57371 -15.00417 -14.82139 -14.64752 -14.35995 -14.02223 -13.80340 -13.43508 -13.29167 -13.15552 -13.06765 -12.51007 -12.41370 -12.20619 -12.14323 -11.75784 -11.75010 -11.43255 -11.30479 -11.18749 -11.01789 -10.85714 -10.84161 -10.77212 -10.61155 -10.47402 -10.30434 -10.22472 -9.95327 -9.66619 -9.26441 -8.86216 -8.84668 -6.90756 -5.75598 -3.04001 0.46381 2.01023 2.05604 2.74534 2.78815 3.44544 3.50406 3.52616 3.54642 3.69607 4.10058 4.19622 4.35218 4.52535 4.62412 4.66528 4.68824 4.77223 4.99100 5.02210 5.07673 5.17069 5.23631 5.32211 5.35966 5.40437 5.45481 5.52578 5.55565 5.59032 5.70213 5.73254 5.79816 5.81224 5.84885 5.88464 5.95803 5.98175 6.02596 6.11915 6.25910 6.36358 6.40366 6.84234 6.87925 7.08291 7.24967 7.72395 7.74974 8.43690 9.54769 10.12920 10.47318 11.47508 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002269 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.206578 B =12335.579626 C =13614.367210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.091 0.909 4 C 0.102 3.898 5 N -0.610 5.610 6 C 0.623 3.377 7 O -0.511 6.511 8 C -0.099 4.099 9 O -0.187 6.187 10 C 0.197 3.803 11 N -0.490 5.490 12 C 0.109 3.891 13 C -0.093 4.093 14 C -0.162 4.162 15 C -0.158 4.158 16 C 0.110 3.890 17 C -0.091 4.091 18 H 0.085 0.915 19 C -0.114 4.114 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.237 4.237 23 H 0.071 0.929 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.256 0.744 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.800 -9.317 -27.014 29.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.109 0.891 4 C -0.021 4.021 5 N -0.343 5.343 6 C 0.411 3.589 7 O -0.389 6.389 8 C -0.154 4.154 9 O -0.073 6.073 10 C -0.028 4.028 11 N -0.219 5.219 12 C -0.014 4.014 13 C -0.112 4.112 14 C -0.199 4.199 15 C -0.195 4.195 16 C -0.011 4.011 17 C -0.111 4.111 18 H 0.103 0.897 19 C -0.152 4.152 20 C 0.024 3.976 21 N -0.378 5.378 22 C -0.368 4.368 23 H 0.089 0.911 24 C -0.212 4.212 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.272 0.728 36 H 0.157 0.843 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.452 -10.327 -27.119 29.961 hybrid contribution 0.167 0.757 1.192 1.422 sum -7.285 -9.570 -25.928 28.582 Atomic orbital electron populations 1.21835 0.93978 1.01956 1.02177 1.22173 0.96565 0.99850 0.93564 0.89114 1.22374 0.95736 0.87079 0.96867 1.48659 1.52919 1.14266 1.18435 1.15854 0.80157 0.81379 0.81535 1.90884 1.40222 1.42938 1.64849 1.22798 1.04771 0.91838 0.96036 1.84600 1.53991 1.42736 1.25971 1.28325 0.98453 0.88660 0.87396 1.70248 1.12729 1.16440 1.22457 1.21008 0.96767 0.94955 0.88683 1.20564 1.02034 0.84955 1.03609 1.22995 1.01016 1.00896 0.94985 1.22958 0.97967 0.96987 1.01579 1.22686 0.97286 1.00281 0.80840 1.22306 0.96858 0.97396 0.94545 0.89677 1.21724 1.01377 0.97600 0.94542 1.20682 0.96435 0.92822 0.87697 1.42372 1.79111 1.05146 1.11207 1.19289 1.35465 0.92184 0.89896 0.91135 1.24749 1.02523 0.95339 0.98573 1.69669 1.54426 1.00702 1.33559 0.86113 0.78022 0.77905 0.84163 1.20528 1.21856 1.21887 0.92690 0.91687 0.92574 0.91249 0.90112 0.72835 0.84266 0.87831 0.88201 0.87882 0.88747 0.89036 0.90067 0.91536 0.91264 0.96443 0.96295 0.78336 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.90 37.15 0.33 -0.87 16 2 C -0.10 -0.97 3.17 -89.24 -0.28 -1.25 16 3 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 4 C 0.10 0.96 5.98 -2.98 -0.02 0.95 16 5 N -0.61 -7.40 3.29 -171.50 -0.56 -7.97 16 6 C 0.62 8.45 7.86 -12.83 -0.10 8.35 16 7 O -0.51 -8.21 15.08 5.20 0.08 -8.13 16 8 C -0.10 -1.17 6.98 -36.84 -0.26 -1.42 16 9 O -0.19 -1.69 8.16 4.43 0.04 -1.65 16 10 C 0.20 1.35 13.21 52.24 0.69 2.04 16 11 N -0.49 -4.89 10.89 -10.89 -0.12 -5.00 16 12 C 0.11 1.26 6.67 -82.47 -0.55 0.71 16 13 C -0.09 -1.01 5.60 -91.77 -0.51 -1.53 16 14 C -0.16 -1.40 10.15 -26.73 -0.27 -1.67 16 15 C -0.16 -1.43 10.23 -26.73 -0.27 -1.71 16 16 C 0.11 1.41 5.92 -2.31 -0.01 1.39 16 17 C -0.09 -1.09 2.58 -88.93 -0.23 -1.32 16 18 H 0.08 1.07 7.86 -51.93 -0.41 0.66 16 19 C -0.11 -1.69 4.70 -26.74 -0.13 -1.82 16 20 C 0.15 2.98 6.15 -4.05 -0.02 2.96 16 21 N -0.73 -18.69 5.60 -59.91 -0.34 -19.02 16 22 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 24 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 25 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 26 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.70 5.77 -51.93 -0.30 0.40 16 35 H 0.26 0.31 8.06 -52.48 -0.42 -0.11 16 36 H 0.14 1.68 6.65 -51.92 -0.35 1.33 16 37 H 0.10 0.92 7.92 -51.93 -0.41 0.51 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.30 7.83 -51.93 -0.41 0.89 16 42 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 43 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.38 7.67 -51.93 -0.40 -0.02 16 47 H 0.38 10.15 7.67 -40.82 -0.31 9.84 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 393.17 15.07 5.93 5.93 Total: -1.00 -34.20 393.17 -8.76 -42.96 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.59 Total: 5.61 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.89 Total: -2.64 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.29 Total: -59.71 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.11 Total: -9.78 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.20 -8.76 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104673557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.367 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds