Wall clock time and date at job start Tue Mar 31 2020 17:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.29300 * 2 1 4 4 C 1.54003 * 110.32893 * 237.86020 * 2 1 3 5 5 N 1.47483 * 107.08996 * 242.31453 * 4 2 1 6 6 C 1.34773 * 127.03752 * 154.51161 * 5 4 2 7 7 O 1.21682 * 120.00057 * 179.74722 * 6 5 4 8 8 C 1.46726 * 119.99852 * 0.03003 * 6 5 4 9 9 O 1.35346 * 126.64251 * 359.40623 * 8 6 5 10 10 C 1.33660 * 107.68180 * 179.87763 * 9 8 6 11 11 N 1.30613 * 109.15642 * 0.39720 * 10 9 8 12 12 C 1.33695 * 108.99476 * 359.75438 * 11 10 9 13 13 C 1.50698 * 126.27229 * 180.02562 * 12 11 10 14 14 C 1.53002 * 117.50302 * 8.60147 * 13 12 11 15 15 C 1.52997 * 117.50140 * 299.97290 * 13 12 11 16 16 C 1.48122 * 105.92882 * 334.77985 * 5 4 2 17 17 C 1.54599 * 103.42652 * 39.02308 * 16 5 4 18 18 H 1.08994 * 110.57695 * 81.16770 * 17 16 5 19 19 C 1.52998 * 110.83388 * 204.44874 * 17 16 5 20 20 C 1.52993 * 109.47143 * 288.56129 * 19 17 16 21 21 N 1.46499 * 109.47551 * 180.02562 * 20 19 17 22 22 C 1.36932 * 120.00331 * 179.97438 * 21 20 19 23 23 H 1.07997 * 120.00061 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00142 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99852 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00243 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47082 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47309 * 120.00005 * 26 24 22 29 29 H 1.48499 * 109.47344 * 240.00148 * 26 24 22 30 30 H 1.09000 * 109.47426 * 180.68628 * 1 2 3 31 31 H 1.09003 * 109.47007 * 300.68317 * 1 2 3 32 32 H 1.09003 * 109.47113 * 60.67941 * 1 2 3 33 33 H 1.09003 * 109.91359 * 122.94889 * 4 2 1 34 34 H 1.09002 * 110.06579 * 1.76442 * 4 2 1 35 35 H 1.08008 * 125.42256 * 180.12809 * 10 9 8 36 36 H 1.09009 * 115.54913 * 154.30235 * 13 12 11 37 37 H 1.09006 * 117.49643 * 359.97438 * 14 13 12 38 38 H 1.08993 * 117.50172 * 145.02054 * 14 13 12 39 39 H 1.08994 * 117.50024 * 214.97628 * 15 13 12 40 40 H 1.09000 * 117.49953 * 359.97438 * 15 13 12 41 41 H 1.08994 * 110.66239 * 157.50975 * 16 5 4 42 42 H 1.08997 * 110.65901 * 280.62509 * 16 5 4 43 43 H 1.09006 * 109.46913 * 48.56172 * 19 17 16 44 44 H 1.09002 * 109.46765 * 168.55873 * 19 17 16 45 45 H 1.09006 * 109.47251 * 299.99836 * 20 19 17 46 46 H 1.09002 * 109.47499 * 60.00193 * 20 19 17 47 47 H 0.97004 * 119.99434 * 359.97438 * 21 20 19 48 48 H 0.96997 * 120.00276 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 -1.2228 5 7 2.8297 -1.9204 -0.7102 6 6 3.0644 -3.0861 -1.3446 7 8 3.7203 -3.9541 -0.7997 8 6 2.5342 -3.3060 -2.6950 9 8 1.7880 -2.4409 -3.4206 10 6 1.5151 -3.0237 -4.5921 11 7 2.0542 -4.2132 -4.6149 12 6 2.6927 -4.4238 -3.4593 13 6 3.4495 -5.6683 -3.0728 14 6 3.6734 -6.7244 -4.1570 15 6 2.6706 -6.9845 -3.0310 16 6 3.2815 -1.5369 0.6473 17 6 2.0692 -0.7720 1.2264 18 1 1.3209 -1.4691 1.6032 19 6 2.5113 0.1968 2.3250 20 6 2.9217 -0.5949 3.5682 21 7 3.3444 0.3327 4.6204 22 6 3.7578 -0.1501 5.8332 23 1 3.7719 -1.2146 6.0144 24 6 4.1589 0.7289 6.8300 25 7 4.1413 2.0264 6.6095 26 14 4.7236 0.0703 8.4843 27 1 4.6499 -1.4129 8.4779 28 1 6.1241 0.4958 8.7346 29 1 3.8450 0.6044 9.5558 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5033 -0.8960 33 1 2.7166 -0.1222 -1.8111 34 1 1.2353 -1.1173 -1.8376 35 1 0.9370 -2.5830 -5.3909 36 1 4.2402 -5.5278 -2.3357 37 1 3.2730 -6.5192 -5.1498 38 1 4.6115 -7.2788 -4.1334 39 1 2.9490 -7.7101 -2.2669 40 1 1.6106 -6.9502 -3.2828 41 1 3.4980 -2.4222 1.2451 42 1 4.1540 -0.8858 0.5926 43 1 3.3590 0.7840 1.9719 44 1 1.6861 0.8637 2.5748 45 1 2.0739 -1.1821 3.9213 46 1 3.7468 -1.2618 3.3184 47 1 3.3314 1.2889 4.4578 48 1 4.4211 2.6406 7.3061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104673557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:27 Heat of formation + Delta-G solvation = 0.061843 kcal Electronic energy + Delta-G solvation = -28424.911679 eV Core-core repulsion = 24481.605200 eV Total energy + Delta-G solvation = -3943.306479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.53225 -41.21251 -39.32326 -38.37318 -36.89515 -35.53312 -34.62846 -33.48487 -32.05543 -31.47401 -28.75076 -27.50043 -26.31229 -25.08098 -24.67341 -23.84799 -23.27235 -22.16042 -21.82001 -21.14961 -20.83356 -19.18910 -18.69745 -18.04355 -17.80991 -17.20664 -16.67552 -16.66719 -16.39931 -15.94394 -15.64689 -15.41252 -15.28685 -15.06014 -14.79989 -14.59534 -14.34514 -14.10344 -13.58178 -13.31061 -13.13878 -12.98384 -12.94841 -12.90291 -12.69833 -12.45773 -12.44218 -12.31258 -12.10810 -12.02659 -11.87714 -11.72533 -11.60946 -11.54082 -11.48312 -11.30479 -11.10741 -10.94216 -10.13645 -9.71884 -9.01002 -7.97025 -5.25620 -0.31296 1.27709 1.33457 1.46432 1.47005 1.57372 1.84142 1.91271 2.54769 2.89717 3.02581 3.28662 3.36625 3.44402 3.48898 3.66337 3.73164 3.91488 4.06019 4.08056 4.18566 4.24444 4.26572 4.37839 4.45169 4.46234 4.48704 4.58585 4.64630 4.66761 4.71130 4.77422 4.83411 4.88007 4.89552 4.97988 5.04820 5.10640 5.15112 5.20163 5.23966 5.27440 5.35668 5.39626 5.48677 5.51314 6.21779 6.26422 6.47543 6.77719 7.32421 8.08593 8.32198 9.26653 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002269 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.206578 B =12335.579626 C =13614.367210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.102 0.898 4 C 0.104 3.896 5 N -0.611 5.611 6 C 0.617 3.383 7 O -0.551 6.551 8 C -0.126 4.126 9 O -0.185 6.185 10 C 0.229 3.771 11 N -0.518 5.518 12 C 0.108 3.892 13 C -0.119 4.119 14 C -0.145 4.145 15 C -0.153 4.153 16 C 0.109 3.891 17 C -0.082 4.082 18 H 0.080 0.920 19 C -0.098 4.098 20 C 0.149 3.851 21 N -0.747 5.747 22 C -0.246 4.246 23 H 0.072 0.928 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.973 3.027 27 H -0.269 1.269 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.311 0.689 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.375 0.625 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 -9.221 -29.167 31.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.120 0.880 4 C -0.018 4.018 5 N -0.342 5.342 6 C 0.406 3.594 7 O -0.432 6.432 8 C -0.181 4.181 9 O -0.072 6.072 10 C 0.005 3.995 11 N -0.246 5.246 12 C -0.016 4.016 13 C -0.138 4.138 14 C -0.182 4.182 15 C -0.190 4.190 16 C -0.013 4.013 17 C -0.102 4.102 18 H 0.098 0.902 19 C -0.136 4.136 20 C 0.022 3.978 21 N -0.390 5.390 22 C -0.378 4.378 23 H 0.090 0.910 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.802 3.198 27 H -0.193 1.193 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.326 0.674 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.207 0.793 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.793 -10.249 -29.305 32.266 hybrid contribution 0.529 0.697 1.736 1.944 sum -8.264 -9.552 -27.568 30.324 Atomic orbital electron populations 1.21820 0.92828 1.01914 1.03076 1.22153 0.97431 0.99893 0.91829 0.87974 1.22536 0.96122 0.86198 0.96943 1.48712 1.52833 1.14672 1.17996 1.16130 0.79790 0.81179 0.82264 1.90848 1.42059 1.44200 1.66101 1.22332 1.07079 0.92827 0.95868 1.84586 1.53766 1.42277 1.26521 1.29642 0.95618 0.87322 0.86928 1.70284 1.14127 1.18247 1.21964 1.21163 0.96331 0.94868 0.89200 1.20552 1.02585 0.85924 1.04725 1.23042 1.01433 0.99304 0.94396 1.23009 0.97995 0.95933 1.02055 1.22592 0.97799 0.99432 0.81446 1.22147 0.96370 0.96886 0.94762 0.90185 1.21545 1.01485 0.97489 0.93080 1.20855 0.95939 0.92598 0.88380 1.42589 1.79143 1.05532 1.11714 1.19653 1.34695 0.92342 0.91131 0.91048 1.25569 1.03391 0.95676 1.02171 1.69810 1.55763 1.01767 1.34534 0.85082 0.77176 0.77836 0.79736 1.19325 1.21851 1.21756 0.93171 0.92177 0.90348 0.89813 0.88833 0.67402 0.86264 0.87745 0.86726 0.87055 0.88784 0.91301 0.89988 0.91318 0.90915 0.96699 0.96613 0.79256 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.90 71.98 0.64 -1.36 16 2 C -0.09 -1.59 3.17 -9.90 -0.03 -1.62 16 3 H 0.10 1.56 7.85 -2.39 -0.02 1.54 16 4 C 0.10 1.74 5.98 86.53 0.52 2.26 16 5 N -0.61 -14.70 3.29 -814.73 -2.68 -17.38 16 6 C 0.62 17.19 7.86 86.46 0.68 17.87 16 7 O -0.55 -18.86 15.08 -4.29 -0.06 -18.92 16 8 C -0.13 -2.90 6.98 24.05 0.17 -2.74 16 9 O -0.18 -2.88 8.16 -7.07 -0.06 -2.94 16 10 C 0.23 2.35 13.21 130.42 1.72 4.07 16 11 N -0.52 -9.30 10.89 -303.14 -3.30 -12.60 16 12 C 0.11 2.44 6.67 41.83 0.28 2.72 16 13 C -0.12 -2.66 5.60 -11.54 -0.06 -2.72 16 14 C -0.14 -2.41 10.15 30.60 0.31 -2.10 16 15 C -0.15 -2.74 10.23 30.60 0.31 -2.43 16 16 C 0.11 2.84 5.92 86.61 0.51 3.35 16 17 C -0.08 -1.91 2.58 -9.70 -0.02 -1.94 16 18 H 0.08 1.98 7.86 -2.39 -0.02 1.96 16 19 C -0.10 -2.86 4.70 30.59 0.14 -2.72 16 20 C 0.15 5.94 6.15 86.38 0.53 6.47 16 21 N -0.75 -38.56 5.60 -343.46 -1.92 -40.48 16 22 C -0.25 -14.11 9.99 84.04 0.84 -13.28 16 23 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 25 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 26 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 28 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 29 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.36 5.77 -2.39 -0.01 1.35 16 35 H 0.31 -0.98 8.06 -2.91 -0.02 -1.00 16 36 H 0.12 3.11 6.65 -2.38 -0.02 3.10 16 37 H 0.10 1.73 7.92 -2.38 -0.02 1.71 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 2.09 7.83 -2.39 -0.02 2.07 16 42 H 0.08 2.10 7.93 -2.39 -0.02 2.08 16 43 H 0.07 2.00 7.99 -2.38 -0.02 1.98 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.02 0.65 7.67 -2.39 -0.02 0.63 16 47 H 0.38 20.24 7.67 -92.71 -0.71 19.52 16 48 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -76.07 393.17 1.54 -74.53 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.26 Total: 26.31 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 7.00 Total: 1.89 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -7.62 Total: -129.79 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.12 Total: -21.86 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -76.07 1.54 -74.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104673557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.592 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds