Wall clock time and date at job start Tue Mar 31 2020 17:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.91544 * 2 1 4 4 C 1.54913 * 111.00097 * 236.10517 * 2 1 3 5 5 N 1.47435 * 104.82823 * 204.91500 * 4 2 1 6 6 C 1.34773 * 125.64380 * 204.16253 * 5 4 2 7 7 O 1.21590 * 119.99186 * 179.97438 * 6 5 4 8 8 C 1.47509 * 120.00631 * 359.95750 * 6 5 4 9 9 C 1.36820 * 126.94569 * 179.70616 * 8 6 5 10 10 C 1.41263 * 103.84832 * 179.97438 * 9 8 6 11 11 C 1.50692 * 126.70853 * 180.10010 * 10 9 8 12 12 C 1.53000 * 117.49791 * 344.01061 * 11 10 9 13 13 C 1.53005 * 117.50003 * 275.35205 * 11 10 9 14 14 N 1.30131 * 106.58590 * 0.34416 * 10 9 8 15 15 O 1.20886 * 111.98573 * 359.77338 * 14 10 9 16 16 C 1.47018 * 108.70157 * 24.12774 * 5 4 2 17 17 C 1.54327 * 107.27517 * 358.93991 * 16 5 4 18 18 H 1.09002 * 110.72047 * 96.34421 * 17 16 5 19 19 C 1.52997 * 110.72006 * 219.44616 * 17 16 5 20 20 C 1.53004 * 109.47117 * 293.54070 * 19 17 16 21 21 N 1.46499 * 109.46939 * 180.02562 * 20 19 17 22 22 C 1.36932 * 119.99549 * 180.02562 * 21 20 19 23 23 H 1.08003 * 120.00354 * 0.02562 * 22 21 20 24 24 C 1.38817 * 120.00011 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00154 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99635 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99668 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99848 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99841 * 26 24 22 30 30 H 1.09000 * 109.47109 * 296.09576 * 1 2 3 31 31 H 1.09005 * 109.47138 * 56.09652 * 1 2 3 32 32 H 1.08998 * 109.47305 * 176.09351 * 1 2 3 33 33 H 1.08997 * 110.36884 * 86.08222 * 4 2 1 34 34 H 1.08997 * 110.36770 * 323.75219 * 4 2 1 35 35 H 1.07998 * 128.07500 * 0.03806 * 9 8 6 36 36 H 1.09002 * 115.55418 * 129.68006 * 11 10 9 37 37 H 1.09005 * 117.50102 * 359.97438 * 12 11 10 38 38 H 1.09004 * 117.50102 * 145.02213 * 12 11 10 39 39 H 1.08998 * 117.49816 * 214.97680 * 13 11 10 40 40 H 1.09004 * 117.49711 * 359.97438 * 13 11 10 41 41 H 1.09001 * 109.87992 * 239.52420 * 16 5 4 42 42 H 1.09003 * 109.88351 * 118.36028 * 16 5 4 43 43 H 1.09008 * 109.46933 * 173.54730 * 19 17 16 44 44 H 1.08994 * 109.47327 * 53.54563 * 19 17 16 45 45 H 1.09008 * 109.46680 * 60.00505 * 20 19 17 46 46 H 1.08994 * 109.47425 * 300.00433 * 20 19 17 47 47 H 0.96993 * 120.00302 * 0.02562 * 21 20 19 48 48 H 0.96998 * 119.99442 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2005 5 7 3.4272 -1.2430 -0.7735 6 6 4.4480 -1.5601 -1.5943 7 8 5.5161 -1.9087 -1.1292 8 6 4.2696 -1.4848 -3.0566 9 6 5.2047 -1.7668 -4.0148 10 6 4.5230 -1.5369 -5.2305 11 6 5.0818 -1.6972 -6.6208 12 6 6.6024 -1.7844 -6.7652 13 6 5.8625 -0.5199 -7.2085 14 7 3.3198 -1.1544 -4.9151 15 8 3.1557 -1.1179 -3.7180 16 6 3.4675 -1.2742 0.6958 17 6 2.0862 -0.8080 1.2021 18 1 1.4478 -1.6633 1.4237 19 6 2.2350 0.0875 2.4337 20 6 2.7849 -0.7365 3.5999 21 7 2.9269 0.1208 4.7793 22 6 3.4051 -0.4011 5.9514 23 1 3.6780 -1.4446 6.0063 24 6 3.5402 0.4113 7.0689 25 7 4.0003 -0.0903 8.1955 26 14 3.0688 2.2163 6.9738 27 1 4.2496 3.0151 6.5579 28 1 2.6038 2.6774 8.3066 29 1 1.9782 2.3915 5.9813 30 1 -0.3633 0.4520 0.9229 31 1 -0.3634 0.5733 -0.8530 32 1 -0.3634 -1.0252 -0.0700 33 1 2.1560 -0.1718 -2.0837 34 1 1.4518 -1.6702 -1.4026 35 1 6.2253 -2.0908 -3.8744 36 1 4.4764 -2.2914 -7.3052 37 1 7.1988 -1.7254 -5.8547 38 1 6.9975 -2.4357 -7.5449 39 1 5.7709 -0.3398 -8.2796 40 1 5.9715 0.3708 -6.5897 41 1 4.2426 -0.5998 1.0597 42 1 3.6651 -2.2894 1.0398 43 1 1.2619 0.4967 2.7051 44 1 2.9224 0.9030 2.2091 45 1 3.7581 -1.1458 3.3285 46 1 2.0976 -1.5520 3.8245 47 1 2.6821 1.0581 4.7299 48 1 4.0950 0.4776 8.9762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104743044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:16 Heat of formation + Delta-G solvation = 64.461557 kcal Electronic energy + Delta-G solvation = -28070.469915 eV Core-core repulsion = 24129.956017 eV Total energy + Delta-G solvation = -3940.513898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.42160 -40.42615 -38.36215 -38.10294 -35.40604 -33.86577 -33.49203 -32.30196 -32.11871 -30.57977 -27.74767 -26.73621 -25.18208 -24.95441 -23.61108 -22.78737 -22.36321 -21.90497 -20.76171 -20.22258 -19.77843 -18.22357 -18.06285 -17.54756 -16.78127 -16.63651 -16.09436 -15.49371 -15.03809 -14.77655 -14.75455 -14.38549 -14.19671 -14.05507 -13.54222 -13.42731 -13.03681 -12.82159 -12.72297 -12.65308 -12.53632 -12.22926 -12.08141 -11.96783 -11.67575 -11.61246 -11.39581 -11.28554 -11.00182 -10.92442 -10.71790 -10.59825 -10.51549 -10.32177 -10.28207 -10.08019 -10.05826 -9.57490 -8.96888 -8.88054 -7.21909 -5.75286 -3.10840 0.43038 1.56508 2.16498 2.66979 2.75356 3.09522 3.37807 3.40546 3.45860 3.49663 3.93759 4.21271 4.24225 4.27293 4.43125 4.50894 4.51077 4.60174 4.61213 4.77899 4.94038 5.00038 5.08612 5.10854 5.22882 5.24486 5.28985 5.33463 5.43079 5.46386 5.50499 5.53959 5.54910 5.60486 5.63350 5.72635 5.82605 5.88926 5.90771 5.99742 6.06216 6.15140 6.26576 6.72232 6.75862 7.03409 7.51803 7.74736 8.01280 8.43745 9.22978 9.95257 10.14865 11.43171 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.002090 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.211173 B =13392.488958 C =14049.055449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.097 3.903 5 N -0.603 5.603 6 C 0.614 3.386 7 O -0.509 6.509 8 C -0.074 4.074 9 C -0.149 4.149 10 C 0.043 3.957 11 C -0.090 4.090 12 C -0.162 4.162 13 C -0.162 4.162 14 N -0.342 5.342 15 O 0.120 5.880 16 C 0.110 3.890 17 C -0.089 4.089 18 H 0.091 0.909 19 C -0.120 4.120 20 C 0.154 3.846 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.002 3.998 25 N -0.934 5.934 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.183 0.817 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.027 0.973 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 -1.841 -32.957 33.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.026 4.026 5 N -0.336 5.336 6 C 0.399 3.601 7 O -0.384 6.384 8 C -0.140 4.140 9 C -0.171 4.171 10 C -0.114 4.114 11 C -0.109 4.109 12 C -0.200 4.200 13 C -0.200 4.200 14 N -0.042 5.042 15 O 0.047 5.953 16 C -0.011 4.011 17 C -0.109 4.109 18 H 0.110 0.890 19 C -0.158 4.158 20 C 0.027 3.973 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.193 4.193 25 N -0.582 5.582 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.201 0.799 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.011 -1.879 -33.279 33.468 hybrid contribution 0.382 1.018 0.317 1.133 sum -2.629 -0.861 -32.962 33.078 Atomic orbital electron populations 1.21700 0.93294 1.02347 1.02497 1.22437 0.96596 0.99524 0.93390 0.89310 1.22673 0.82533 0.99012 0.98353 1.48368 1.12157 1.65110 1.07941 1.16110 0.83537 0.78774 0.81662 1.90916 1.25361 1.47749 1.74420 1.24177 0.88005 1.06599 0.95173 1.22784 1.02104 1.02801 0.89444 1.22652 0.90232 1.02111 0.96404 1.20131 0.94945 1.04973 0.90824 1.23093 0.92072 1.00766 1.04021 1.23064 1.02417 0.92712 1.01783 1.73697 1.19538 1.17235 0.93733 1.85080 1.34126 1.63399 1.12741 1.22269 0.98825 1.02908 0.77079 1.22304 0.94914 0.99013 0.94637 0.89045 1.21794 1.01968 0.98226 0.93792 1.20677 0.97733 0.93111 0.85760 1.42706 1.79929 1.08573 1.09067 1.19073 1.34911 0.96584 0.86817 0.89221 1.24692 1.01274 0.97674 0.95678 1.69706 1.51945 1.35182 1.01405 0.86526 0.78317 0.86787 0.76751 1.21099 1.21750 1.20361 0.91532 0.92320 0.92187 0.89841 0.90414 0.79936 0.85600 0.87985 0.87498 0.87675 0.88373 0.90029 0.90360 0.91177 0.91637 0.95407 0.95535 0.80721 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.31 37.16 0.35 -0.67 16 2 C -0.10 -0.86 3.09 -88.47 -0.27 -1.14 16 3 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16 4 C 0.10 0.84 5.68 -2.52 -0.01 0.82 16 5 N -0.60 -6.80 3.33 -171.75 -0.57 -7.37 16 6 C 0.61 7.78 7.85 -12.48 -0.10 7.69 16 7 O -0.51 -8.04 17.24 5.29 0.09 -7.95 16 8 C -0.07 -0.80 7.06 -36.32 -0.26 -1.06 16 9 C -0.15 -1.43 10.26 -38.95 -0.40 -1.83 16 10 C 0.04 0.40 6.94 -82.17 -0.57 -0.17 16 11 C -0.09 -0.60 6.33 -91.77 -0.58 -1.18 16 12 C -0.16 -0.78 10.05 -26.69 -0.27 -1.05 16 13 C -0.16 -0.87 10.24 -26.69 -0.27 -1.14 16 14 N -0.34 -3.67 12.04 33.52 0.40 -3.27 16 15 O 0.12 1.24 8.57 15.55 0.13 1.38 16 16 C 0.11 1.33 5.61 -3.06 -0.02 1.31 16 17 C -0.09 -0.95 2.45 -88.79 -0.22 -1.17 16 18 H 0.09 0.92 8.04 -51.93 -0.42 0.51 16 19 C -0.12 -1.62 4.71 -26.73 -0.13 -1.75 16 20 C 0.15 2.85 6.11 -4.04 -0.02 2.82 16 21 N -0.76 -17.94 5.41 -59.91 -0.32 -18.26 16 22 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 23 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 24 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 25 N -0.93 -29.62 13.97 55.49 0.78 -28.84 16 26 Si 0.89 22.18 27.73 -169.99 -4.71 17.46 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.40 8.07 -51.93 -0.42 -0.01 16 33 H 0.08 0.68 6.27 -51.93 -0.33 0.35 16 34 H 0.08 0.60 7.98 -51.93 -0.41 0.18 16 35 H 0.18 1.45 7.61 -52.49 -0.40 1.05 16 36 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.49 7.33 -51.93 -0.38 0.11 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.10 7.76 -51.93 -0.40 0.69 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 45 H 0.03 0.53 7.49 -51.92 -0.39 0.14 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.36 8.27 5.53 -40.82 -0.23 8.04 16 48 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -34.16 392.52 -8.92 -43.08 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.61 Total: 3.51 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.03 Total: -5.66 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.28 Total: -57.74 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.22 Total: -6.57 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.16 -8.92 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104743044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.542 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds