Wall clock time and date at job start Tue Mar 31 2020 17:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.91544 * 2 1 4 4 C 1.54913 * 111.00097 * 236.10517 * 2 1 3 5 5 N 1.47435 * 104.82823 * 204.91500 * 4 2 1 6 6 C 1.34773 * 125.64380 * 204.16253 * 5 4 2 7 7 O 1.21590 * 119.99186 * 179.97438 * 6 5 4 8 8 C 1.47509 * 120.00631 * 359.95750 * 6 5 4 9 9 C 1.36820 * 126.94569 * 179.70616 * 8 6 5 10 10 C 1.41263 * 103.84832 * 179.97438 * 9 8 6 11 11 C 1.50692 * 126.70853 * 180.10010 * 10 9 8 12 12 C 1.53000 * 117.49791 * 344.01061 * 11 10 9 13 13 C 1.53005 * 117.50003 * 275.35205 * 11 10 9 14 14 N 1.30131 * 106.58590 * 0.34416 * 10 9 8 15 15 O 1.20886 * 111.98573 * 359.77338 * 14 10 9 16 16 C 1.47018 * 108.70157 * 24.12774 * 5 4 2 17 17 C 1.54327 * 107.27517 * 358.93991 * 16 5 4 18 18 H 1.09002 * 110.72047 * 96.34421 * 17 16 5 19 19 C 1.52997 * 110.72006 * 219.44616 * 17 16 5 20 20 C 1.53004 * 109.47117 * 293.54070 * 19 17 16 21 21 N 1.46499 * 109.46939 * 180.02562 * 20 19 17 22 22 C 1.36932 * 119.99549 * 180.02562 * 21 20 19 23 23 H 1.08003 * 120.00354 * 0.02562 * 22 21 20 24 24 C 1.38817 * 120.00011 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00154 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99635 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99668 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99848 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99841 * 26 24 22 30 30 H 1.09000 * 109.47109 * 296.09576 * 1 2 3 31 31 H 1.09005 * 109.47138 * 56.09652 * 1 2 3 32 32 H 1.08998 * 109.47305 * 176.09351 * 1 2 3 33 33 H 1.08997 * 110.36884 * 86.08222 * 4 2 1 34 34 H 1.08997 * 110.36770 * 323.75219 * 4 2 1 35 35 H 1.07998 * 128.07500 * 0.03806 * 9 8 6 36 36 H 1.09002 * 115.55418 * 129.68006 * 11 10 9 37 37 H 1.09005 * 117.50102 * 359.97438 * 12 11 10 38 38 H 1.09004 * 117.50102 * 145.02213 * 12 11 10 39 39 H 1.08998 * 117.49816 * 214.97680 * 13 11 10 40 40 H 1.09004 * 117.49711 * 359.97438 * 13 11 10 41 41 H 1.09001 * 109.87992 * 239.52420 * 16 5 4 42 42 H 1.09003 * 109.88351 * 118.36028 * 16 5 4 43 43 H 1.09008 * 109.46933 * 173.54730 * 19 17 16 44 44 H 1.08994 * 109.47327 * 53.54563 * 19 17 16 45 45 H 1.09008 * 109.46680 * 60.00505 * 20 19 17 46 46 H 1.08994 * 109.47425 * 300.00433 * 20 19 17 47 47 H 0.96993 * 120.00302 * 0.02562 * 21 20 19 48 48 H 0.96998 * 119.99442 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2005 5 7 3.4272 -1.2430 -0.7735 6 6 4.4480 -1.5601 -1.5943 7 8 5.5161 -1.9087 -1.1292 8 6 4.2696 -1.4848 -3.0566 9 6 5.2047 -1.7668 -4.0148 10 6 4.5230 -1.5369 -5.2305 11 6 5.0818 -1.6972 -6.6208 12 6 6.6024 -1.7844 -6.7652 13 6 5.8625 -0.5199 -7.2085 14 7 3.3198 -1.1544 -4.9151 15 8 3.1557 -1.1179 -3.7180 16 6 3.4675 -1.2742 0.6958 17 6 2.0862 -0.8080 1.2021 18 1 1.4478 -1.6633 1.4237 19 6 2.2350 0.0875 2.4337 20 6 2.7849 -0.7365 3.5999 21 7 2.9269 0.1208 4.7793 22 6 3.4051 -0.4011 5.9514 23 1 3.6780 -1.4446 6.0063 24 6 3.5402 0.4113 7.0689 25 7 4.0003 -0.0903 8.1955 26 14 3.0688 2.2163 6.9738 27 1 4.2496 3.0151 6.5579 28 1 2.6038 2.6774 8.3066 29 1 1.9782 2.3915 5.9813 30 1 -0.3633 0.4520 0.9229 31 1 -0.3634 0.5733 -0.8530 32 1 -0.3634 -1.0252 -0.0700 33 1 2.1560 -0.1718 -2.0837 34 1 1.4518 -1.6702 -1.4026 35 1 6.2253 -2.0908 -3.8744 36 1 4.4764 -2.2914 -7.3052 37 1 7.1988 -1.7254 -5.8547 38 1 6.9975 -2.4357 -7.5449 39 1 5.7709 -0.3398 -8.2796 40 1 5.9715 0.3708 -6.5897 41 1 4.2426 -0.5998 1.0597 42 1 3.6651 -2.2894 1.0398 43 1 1.2619 0.4967 2.7051 44 1 2.9224 0.9030 2.2091 45 1 3.7581 -1.1458 3.3285 46 1 2.0976 -1.5520 3.8245 47 1 2.6821 1.0581 4.7299 48 1 4.0950 0.4776 8.9762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104743044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:15 Heat of formation + Delta-G solvation = 43.320324 kcal Electronic energy + Delta-G solvation = -28071.386667 eV Core-core repulsion = 24129.956017 eV Total energy + Delta-G solvation = -3941.430651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -46.19131 -41.36392 -39.34696 -38.58920 -37.04993 -34.88405 -34.42532 -33.67675 -33.09202 -32.11099 -29.02927 -27.48596 -26.26778 -25.79080 -24.69180 -23.77480 -23.19135 -22.87593 -21.90000 -21.10690 -20.54868 -19.60866 -19.02463 -18.86679 -17.72356 -17.39967 -16.90014 -16.58417 -16.23825 -15.92533 -15.76319 -15.52648 -15.34879 -14.97487 -14.83420 -14.51250 -14.38328 -14.01577 -13.77096 -13.58258 -13.32346 -13.19148 -12.93880 -12.92780 -12.63672 -12.53725 -12.44555 -12.37110 -12.25393 -12.00883 -11.83510 -11.66914 -11.64276 -11.54547 -11.43419 -11.23873 -11.04752 -10.95349 -10.75549 -9.90206 -9.29222 -8.02672 -5.36545 -0.41421 0.84231 1.28308 1.37909 1.42722 1.50052 1.73022 1.91569 2.49125 2.59060 2.91574 3.18841 3.28651 3.44284 3.45720 3.57522 3.73975 3.77410 3.90949 3.95011 4.00230 4.12576 4.21376 4.26150 4.34711 4.41624 4.47563 4.55731 4.63708 4.66409 4.69326 4.76974 4.78791 4.85447 4.90095 4.96197 5.01133 5.05715 5.06717 5.15989 5.18887 5.28341 5.34252 5.42423 5.54021 5.75857 6.12453 6.21470 6.59690 6.93107 7.08586 7.84847 8.04385 9.18930 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.002090 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.211173 B =13392.488958 C =14049.055449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.090 0.910 4 C 0.096 3.904 5 N -0.601 5.601 6 C 0.613 3.387 7 O -0.550 6.550 8 C -0.085 4.085 9 C -0.145 4.145 10 C 0.047 3.953 11 C -0.108 4.108 12 C -0.152 4.152 13 C -0.160 4.160 14 N -0.358 5.358 15 O 0.120 5.880 16 C 0.109 3.891 17 C -0.080 4.080 18 H 0.102 0.898 19 C -0.105 4.105 20 C 0.149 3.851 21 N -0.760 5.760 22 C -0.238 4.238 23 H 0.053 0.947 24 C -0.069 4.069 25 N -0.985 5.985 26 Si 0.960 3.040 27 H -0.279 1.279 28 H -0.295 1.295 29 H -0.246 1.246 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.195 0.805 36 H 0.136 0.864 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.019 0.981 46 H 0.026 0.974 47 H 0.367 0.633 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 -0.422 -35.914 36.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.108 0.892 4 C -0.025 4.025 5 N -0.332 5.332 6 C 0.399 3.601 7 O -0.429 6.429 8 C -0.150 4.150 9 C -0.167 4.167 10 C -0.110 4.110 11 C -0.127 4.127 12 C -0.189 4.189 13 C -0.197 4.197 14 N -0.059 5.059 15 O 0.048 5.952 16 C -0.013 4.013 17 C -0.099 4.099 18 H 0.120 0.880 19 C -0.143 4.143 20 C 0.023 3.977 21 N -0.406 5.406 22 C -0.369 4.369 23 H 0.071 0.929 24 C -0.260 4.260 25 N -0.636 5.636 26 Si 0.787 3.213 27 H -0.206 1.206 28 H -0.222 1.222 29 H -0.170 1.170 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.213 0.787 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.037 0.963 46 H 0.044 0.956 47 H 0.200 0.800 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.541 -0.458 -36.295 36.581 hybrid contribution 0.889 0.458 1.180 1.547 sum -3.652 0.000 -35.116 35.305 Atomic orbital electron populations 1.21698 0.91693 1.03123 1.03033 1.22401 0.97726 0.99048 0.91730 0.89190 1.22870 0.81163 0.99807 0.98688 1.48440 1.12941 1.64276 1.07526 1.16305 0.83186 0.78199 0.82417 1.90885 1.26923 1.49794 1.75328 1.23912 0.88818 1.07902 0.94405 1.23051 1.02499 1.01787 0.89379 1.23061 0.89615 1.00832 0.97489 1.20319 0.96219 1.06470 0.89677 1.23213 0.90691 1.00530 1.04457 1.23143 1.01776 0.92258 1.02558 1.73676 1.20406 1.18040 0.93754 1.85063 1.33821 1.63637 1.12673 1.22207 0.99325 1.01973 0.77821 1.22213 0.94253 0.99234 0.94215 0.87970 1.21649 1.02159 0.97845 0.92686 1.20882 0.97581 0.93399 0.85838 1.42725 1.79518 1.09436 1.08911 1.19056 1.33925 0.95167 0.88767 0.92918 1.25608 1.01979 1.03212 0.95198 1.69904 1.54024 1.37230 1.02408 0.85334 0.78908 0.79879 0.77209 1.20562 1.22196 1.16994 0.91750 0.90918 0.91478 0.88953 0.88893 0.78739 0.84656 0.88116 0.85581 0.85977 0.89298 0.91854 0.91359 0.89878 0.91529 0.96308 0.95579 0.79957 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.31 71.98 0.67 -0.85 16 2 C -0.09 -1.31 3.09 -9.40 -0.03 -1.34 16 3 H 0.09 1.34 8.05 -2.39 -0.02 1.32 16 4 C 0.10 1.47 5.68 86.85 0.49 1.96 16 5 N -0.60 -13.19 3.33 -815.55 -2.71 -15.90 16 6 C 0.61 15.60 7.85 86.69 0.68 16.28 16 7 O -0.55 -17.93 17.24 -4.00 -0.07 -18.00 16 8 C -0.08 -1.79 7.06 24.38 0.17 -1.62 16 9 C -0.15 -2.67 10.26 22.68 0.23 -2.44 16 10 C 0.05 0.82 6.94 43.55 0.30 1.13 16 11 C -0.11 -1.24 6.33 -11.54 -0.07 -1.31 16 12 C -0.15 -1.14 10.05 30.62 0.31 -0.83 16 13 C -0.16 -1.40 10.24 30.62 0.31 -1.08 16 14 N -0.36 -7.26 12.04 -48.86 -0.59 -7.85 16 15 O 0.12 2.37 8.57 65.82 0.56 2.94 16 16 C 0.11 2.59 5.61 86.73 0.49 3.08 16 17 C -0.08 -1.56 2.45 -9.61 -0.02 -1.58 16 18 H 0.10 1.83 8.04 -2.39 -0.02 1.81 16 19 C -0.11 -2.66 4.71 30.59 0.14 -2.51 16 20 C 0.15 5.44 6.11 86.38 0.53 5.96 16 21 N -0.76 -35.50 5.41 -343.44 -1.86 -37.36 16 22 C -0.24 -13.88 10.47 84.04 0.88 -13.00 16 23 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 24 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 25 N -0.99 -64.17 13.97 21.65 0.30 -63.87 16 26 Si 0.96 45.53 27.73 68.60 1.90 47.43 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.25 -10.26 6.52 99.48 0.65 -9.61 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.67 8.07 -2.39 -0.02 0.65 16 33 H 0.09 1.30 6.27 -2.39 -0.01 1.29 16 34 H 0.09 1.19 7.98 -2.39 -0.02 1.17 16 35 H 0.20 2.97 7.61 -2.91 -0.02 2.94 16 36 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 0.79 7.33 -2.38 -0.02 0.77 16 38 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 1.74 7.76 -2.39 -0.02 1.73 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 45 H 0.02 0.73 7.49 -2.38 -0.02 0.71 16 46 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.37 16.04 5.53 -92.71 -0.51 15.53 16 48 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -75.87 392.52 3.49 -72.38 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.39 Total: 22.04 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.55 Total: -1.81 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -4.86 Total: -124.98 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.50 Total: -15.07 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Total: -75.87 3.49 -72.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104743044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.701 kcal (2) G-P(sol) polarization free energy of solvation -75.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds