Wall clock time and date at job start Tue Mar 31 2020 17:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.29458 * 2 1 4 4 C 1.54008 * 110.32723 * 237.86427 * 2 1 3 5 5 N 1.47491 * 107.08420 * 242.31379 * 4 2 1 6 6 C 1.34772 * 127.03465 * 154.51467 * 5 4 2 7 7 O 1.21608 * 120.00045 * 180.02562 * 6 5 4 8 8 C 1.47423 * 119.99762 * 0.02562 * 6 5 4 9 9 C 1.36088 * 126.44584 * 179.97438 * 8 6 5 10 10 O 1.34262 * 106.95162 * 179.78241 * 9 8 6 11 11 C 1.34055 * 108.22030 * 0.38103 * 10 9 8 12 12 C 1.50701 * 125.37401 * 179.86619 * 11 10 9 13 13 C 1.53001 * 117.51956 * 350.98346 * 12 11 10 14 14 C 1.52999 * 60.00190 * 107.47765 * 13 12 11 15 15 N 1.29933 * 109.24634 * 359.60973 * 11 10 9 16 16 C 1.48122 * 105.93030 * 334.77800 * 5 4 2 17 17 C 1.54594 * 103.42326 * 39.02219 * 16 5 4 18 18 H 1.09001 * 110.57282 * 81.17260 * 17 16 5 19 19 C 1.53005 * 110.83287 * 204.44731 * 17 16 5 20 20 C 1.53003 * 109.47015 * 288.56259 * 19 17 16 21 21 N 1.46498 * 109.47336 * 179.97438 * 20 19 17 22 22 C 1.36931 * 120.00140 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00100 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99551 * 179.97438 * 22 21 20 25 25 N 1.31611 * 120.00429 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99455 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47383 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47045 * 120.00507 * 26 24 22 29 29 H 1.48502 * 109.46780 * 240.00075 * 26 24 22 30 30 H 1.08999 * 109.47528 * 180.68480 * 1 2 3 31 31 H 1.09000 * 109.46695 * 300.68689 * 1 2 3 32 32 H 1.09000 * 109.47156 * 60.67902 * 1 2 3 33 33 H 1.08999 * 109.91542 * 122.95083 * 4 2 1 34 34 H 1.08998 * 109.90958 * 1.67020 * 4 2 1 35 35 H 1.08003 * 126.52533 * 0.02562 * 9 8 6 36 36 H 1.09002 * 115.55088 * 205.27954 * 12 11 10 37 37 H 1.09001 * 117.49733 * 214.97195 * 13 12 11 38 38 H 1.08995 * 117.49577 * 359.97438 * 13 12 11 39 39 H 1.09004 * 117.50150 * 252.51496 * 14 13 12 40 40 H 1.09004 * 117.51638 * 107.47550 * 14 13 12 41 41 H 1.08996 * 110.65958 * 157.51207 * 16 5 4 42 42 H 1.08998 * 110.65854 * 280.62520 * 16 5 4 43 43 H 1.08994 * 109.47331 * 48.56203 * 19 17 16 44 44 H 1.08999 * 109.47120 * 168.56562 * 19 17 16 45 45 H 1.09000 * 109.47210 * 300.00554 * 20 19 17 46 46 H 1.08999 * 109.46930 * 60.00186 * 20 19 17 47 47 H 0.97006 * 119.99379 * 0.02562 * 21 20 19 48 48 H 0.97003 * 120.00199 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8298 -1.9204 -0.7102 6 6 3.0644 -3.0860 -1.3447 7 8 3.7156 -3.9555 -0.7981 8 6 2.5317 -3.3070 -2.7015 9 6 2.6884 -4.4265 -3.4592 10 8 2.0433 -4.2094 -4.6164 11 6 1.5091 -2.9806 -4.5744 12 6 0.7034 -2.3414 -5.6760 13 6 0.6498 -3.0643 -7.0234 14 6 -0.5805 -3.0491 -6.1140 15 7 1.7911 -2.4298 -3.4319 16 6 3.2816 -1.5369 0.6473 17 6 2.0693 -0.7720 1.2263 18 1 1.3210 -1.4692 1.6031 19 6 2.5114 0.1968 2.3249 20 6 2.9217 -0.5949 3.5682 21 7 3.3456 0.3326 4.6199 22 6 3.7592 -0.1501 5.8327 23 1 3.7734 -1.2148 6.0138 24 6 4.1614 0.7288 6.8291 25 7 4.1446 2.0262 6.6082 26 14 4.7263 0.0701 8.4833 27 1 4.6515 -1.4129 8.4773 28 1 6.1272 0.4947 8.7329 29 1 3.8485 0.6052 9.5550 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5245 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7167 -0.1222 -1.8112 34 1 1.2333 -1.1173 -1.8349 35 1 3.2259 -5.3210 -3.1809 36 1 0.7069 -1.2515 -5.6893 37 1 0.6182 -2.4499 -7.9232 38 1 1.1978 -4.0021 -7.1135 39 1 -0.8421 -3.9772 -5.6057 40 1 -1.4217 -2.4247 -6.4152 41 1 3.4980 -2.4223 1.2450 42 1 4.1541 -0.8858 0.5925 43 1 3.3591 0.7840 1.9720 44 1 1.6863 0.8637 2.5748 45 1 2.0740 -1.1822 3.9211 46 1 3.7469 -1.2618 3.3183 47 1 3.3326 1.2889 4.4574 48 1 4.4253 2.6404 7.3046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104761569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:34 Heat of formation + Delta-G solvation = 24.951599 kcal Electronic energy + Delta-G solvation = -28094.036354 eV Core-core repulsion = 24151.809175 eV Total energy + Delta-G solvation = -3942.227178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.83606 -40.12149 -38.11253 -37.73499 -35.33981 -34.99654 -33.12500 -31.99659 -30.74563 -30.09893 -27.38823 -26.46431 -24.86442 -24.70188 -23.47330 -23.01667 -22.34351 -21.40285 -20.68706 -19.99231 -19.49072 -17.91915 -17.30398 -17.11809 -16.95685 -16.22414 -15.97700 -15.60729 -15.15620 -14.69204 -14.57158 -14.25486 -13.97879 -13.63274 -13.29074 -13.20269 -13.09527 -13.02325 -12.90471 -12.42762 -12.21605 -12.16543 -12.01491 -11.65443 -11.31897 -11.27244 -11.23310 -11.19885 -11.02176 -10.88137 -10.79877 -10.49879 -10.37582 -10.23251 -10.20771 -9.90052 -9.62116 -9.31288 -8.82629 -8.69929 -6.86760 -5.72204 -3.00318 0.74646 1.58421 2.10144 2.74721 3.03641 3.16762 3.37437 3.46797 3.52499 3.54874 4.08173 4.17032 4.24169 4.46428 4.51695 4.55967 4.63192 4.74696 4.83069 4.99554 5.04148 5.21114 5.22193 5.25936 5.34618 5.40200 5.44157 5.44596 5.53249 5.55134 5.60302 5.68187 5.75354 5.82085 5.89600 5.96983 6.03347 6.10313 6.15464 6.24668 6.34863 6.42441 6.52967 6.90675 6.94403 7.09679 7.42465 7.75662 7.96379 8.47141 9.58158 10.16956 10.51528 11.50944 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.002012 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.015265 B =13910.897845 C =14693.870976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.087 0.913 4 C 0.106 3.894 5 N -0.602 5.602 6 C 0.615 3.385 7 O -0.538 6.538 8 C -0.062 4.062 9 C 0.011 3.989 10 O -0.196 6.196 11 C 0.225 3.775 12 C -0.074 4.074 13 C -0.162 4.162 14 C -0.157 4.157 15 N -0.450 5.450 16 C 0.109 3.891 17 C -0.091 4.091 18 H 0.083 0.917 19 C -0.114 4.114 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.236 4.236 23 H 0.071 0.929 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.232 0.768 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 -8.830 -31.474 34.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.017 4.017 5 N -0.334 5.334 6 C 0.403 3.597 7 O -0.416 6.416 8 C -0.182 4.182 9 C -0.063 4.063 10 O -0.082 6.082 11 C 0.017 3.983 12 C -0.093 4.093 13 C -0.200 4.200 14 C -0.195 4.195 15 N -0.180 5.180 16 C -0.013 4.013 17 C -0.111 4.111 18 H 0.101 0.899 19 C -0.152 4.152 20 C 0.024 3.976 21 N -0.378 5.378 22 C -0.368 4.368 23 H 0.089 0.911 24 C -0.212 4.212 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.248 0.752 36 H 0.166 0.834 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.992 -8.901 -30.915 33.687 hybrid contribution 0.656 -0.580 0.829 1.206 sum -9.336 -9.480 -30.086 32.897 Atomic orbital electron populations 1.21808 0.94163 1.01814 1.01921 1.22207 0.96464 0.99790 0.93973 0.89470 1.22423 0.96442 0.86620 0.96220 1.48531 1.52509 1.14449 1.17909 1.16282 0.79757 0.81115 0.82541 1.90849 1.41106 1.43092 1.66553 1.21756 1.05251 0.93111 0.98044 1.25282 0.97092 1.01208 0.82678 1.84345 1.53072 1.33991 1.36813 1.25172 0.97682 0.80461 0.95014 1.20291 0.99074 0.98971 0.90930 1.23130 1.01276 1.02722 0.92851 1.23157 0.91462 1.02643 1.02229 1.70819 1.14134 1.30359 1.02682 1.22654 0.97222 1.00059 0.81316 1.22286 0.96837 0.97357 0.94595 0.89859 1.21719 1.01309 0.97622 0.94549 1.20687 0.96400 0.92826 0.87733 1.42375 1.79043 1.05162 1.11235 1.19302 1.35351 0.92191 0.89938 0.91137 1.24743 1.02580 0.95338 0.98551 1.69668 1.54469 1.00697 1.33532 0.86113 0.78005 0.77886 0.84213 1.20552 1.21887 1.21907 0.92797 0.91986 0.92607 0.91752 0.88485 0.75152 0.83378 0.87071 0.87770 0.88089 0.86949 0.89338 0.90323 0.91603 0.91344 0.96466 0.96309 0.78339 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.90 37.16 0.33 -1.05 16 2 C -0.11 -1.16 3.17 -89.24 -0.28 -1.44 16 3 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 4 C 0.11 1.20 5.93 -2.97 -0.02 1.18 16 5 N -0.60 -8.22 3.29 -171.24 -0.56 -8.79 16 6 C 0.62 8.98 7.89 -12.52 -0.10 8.88 16 7 O -0.54 -9.25 17.10 5.27 0.09 -9.16 16 8 C -0.06 -0.74 6.84 -83.02 -0.57 -1.31 16 9 C 0.01 0.10 11.94 29.96 0.36 0.46 16 10 O -0.20 -1.73 10.40 6.48 0.07 -1.66 16 11 C 0.23 1.99 7.80 -13.08 -0.10 1.89 16 12 C -0.07 -0.40 6.33 -91.77 -0.58 -0.98 16 13 C -0.16 -0.58 10.16 -26.73 -0.27 -0.85 16 14 C -0.16 -0.60 10.23 -26.73 -0.27 -0.87 16 15 N -0.45 -4.95 8.55 -7.65 -0.07 -5.02 16 16 C 0.11 1.54 5.92 -2.31 -0.01 1.53 16 17 C -0.09 -1.21 2.58 -88.93 -0.23 -1.43 16 18 H 0.08 1.15 7.86 -51.93 -0.41 0.74 16 19 C -0.11 -1.80 4.70 -26.73 -0.13 -1.93 16 20 C 0.15 3.10 6.15 -4.04 -0.02 3.08 16 21 N -0.73 -19.14 5.60 -59.91 -0.34 -19.48 16 22 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 23 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 24 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 25 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 26 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.09 5.69 -51.93 -0.30 0.80 16 35 H 0.23 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.15 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 0.42 7.94 -51.93 -0.41 0.01 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 1.38 7.83 -51.93 -0.41 0.97 16 42 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.07 1.05 7.99 -51.93 -0.41 0.63 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.40 7.67 -51.93 -0.40 0.00 16 47 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 48 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -34.83 396.95 -8.94 -43.77 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.66 Total: 4.93 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.15 Total: -0.41 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.24 Total: -61.38 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.16 Total: -10.83 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.83 -8.94 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104761569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.718 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds