Wall clock time and date at job start Tue Mar 31 2020 17:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.29458 * 2 1 4 4 C 1.54008 * 110.32723 * 237.86427 * 2 1 3 5 5 N 1.47491 * 107.08420 * 242.31379 * 4 2 1 6 6 C 1.34772 * 127.03465 * 154.51467 * 5 4 2 7 7 O 1.21608 * 120.00045 * 180.02562 * 6 5 4 8 8 C 1.47423 * 119.99762 * 0.02562 * 6 5 4 9 9 C 1.36088 * 126.44584 * 179.97438 * 8 6 5 10 10 O 1.34262 * 106.95162 * 179.78241 * 9 8 6 11 11 C 1.34055 * 108.22030 * 0.38103 * 10 9 8 12 12 C 1.50701 * 125.37401 * 179.86619 * 11 10 9 13 13 C 1.53001 * 117.51956 * 350.98346 * 12 11 10 14 14 C 1.52999 * 60.00190 * 107.47765 * 13 12 11 15 15 N 1.29933 * 109.24634 * 359.60973 * 11 10 9 16 16 C 1.48122 * 105.93030 * 334.77800 * 5 4 2 17 17 C 1.54594 * 103.42326 * 39.02219 * 16 5 4 18 18 H 1.09001 * 110.57282 * 81.17260 * 17 16 5 19 19 C 1.53005 * 110.83287 * 204.44731 * 17 16 5 20 20 C 1.53003 * 109.47015 * 288.56259 * 19 17 16 21 21 N 1.46498 * 109.47336 * 179.97438 * 20 19 17 22 22 C 1.36931 * 120.00140 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00100 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99551 * 179.97438 * 22 21 20 25 25 N 1.31611 * 120.00429 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99455 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47383 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47045 * 120.00507 * 26 24 22 29 29 H 1.48502 * 109.46780 * 240.00075 * 26 24 22 30 30 H 1.08999 * 109.47528 * 180.68480 * 1 2 3 31 31 H 1.09000 * 109.46695 * 300.68689 * 1 2 3 32 32 H 1.09000 * 109.47156 * 60.67902 * 1 2 3 33 33 H 1.08999 * 109.91542 * 122.95083 * 4 2 1 34 34 H 1.08998 * 109.90958 * 1.67020 * 4 2 1 35 35 H 1.08003 * 126.52533 * 0.02562 * 9 8 6 36 36 H 1.09002 * 115.55088 * 205.27954 * 12 11 10 37 37 H 1.09001 * 117.49733 * 214.97195 * 13 12 11 38 38 H 1.08995 * 117.49577 * 359.97438 * 13 12 11 39 39 H 1.09004 * 117.50150 * 252.51496 * 14 13 12 40 40 H 1.09004 * 117.51638 * 107.47550 * 14 13 12 41 41 H 1.08996 * 110.65958 * 157.51207 * 16 5 4 42 42 H 1.08998 * 110.65854 * 280.62520 * 16 5 4 43 43 H 1.08994 * 109.47331 * 48.56203 * 19 17 16 44 44 H 1.08999 * 109.47120 * 168.56562 * 19 17 16 45 45 H 1.09000 * 109.47210 * 300.00554 * 20 19 17 46 46 H 1.08999 * 109.46930 * 60.00186 * 20 19 17 47 47 H 0.97006 * 119.99379 * 0.02562 * 21 20 19 48 48 H 0.97003 * 120.00199 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0224 0.0000 4 6 2.0650 -0.7682 -1.2229 5 7 2.8298 -1.9204 -0.7102 6 6 3.0644 -3.0860 -1.3447 7 8 3.7156 -3.9555 -0.7981 8 6 2.5317 -3.3070 -2.7015 9 6 2.6884 -4.4265 -3.4592 10 8 2.0433 -4.2094 -4.6164 11 6 1.5091 -2.9806 -4.5744 12 6 0.7034 -2.3414 -5.6760 13 6 0.6498 -3.0643 -7.0234 14 6 -0.5805 -3.0491 -6.1140 15 7 1.7911 -2.4298 -3.4319 16 6 3.2816 -1.5369 0.6473 17 6 2.0693 -0.7720 1.2263 18 1 1.3210 -1.4692 1.6031 19 6 2.5114 0.1968 2.3249 20 6 2.9217 -0.5949 3.5682 21 7 3.3456 0.3326 4.6199 22 6 3.7592 -0.1501 5.8327 23 1 3.7734 -1.2148 6.0138 24 6 4.1614 0.7288 6.8291 25 7 4.1446 2.0262 6.6082 26 14 4.7263 0.0701 8.4833 27 1 4.6515 -1.4129 8.4773 28 1 6.1272 0.4947 8.7329 29 1 3.8485 0.6052 9.5550 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5245 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 2.7167 -0.1222 -1.8112 34 1 1.2333 -1.1173 -1.8349 35 1 3.2259 -5.3210 -3.1809 36 1 0.7069 -1.2515 -5.6893 37 1 0.6182 -2.4499 -7.9232 38 1 1.1978 -4.0021 -7.1135 39 1 -0.8421 -3.9772 -5.6057 40 1 -1.4217 -2.4247 -6.4152 41 1 3.4980 -2.4223 1.2450 42 1 4.1541 -0.8858 0.5925 43 1 3.3591 0.7840 1.9720 44 1 1.6863 0.8637 2.5748 45 1 2.0740 -1.1822 3.9211 46 1 3.7469 -1.2618 3.3183 47 1 3.3326 1.2889 4.4574 48 1 4.4253 2.6404 7.3046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104761569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:33 Heat of formation + Delta-G solvation = 1.980029 kcal Electronic energy + Delta-G solvation = -28095.032476 eV Core-core repulsion = 24151.809175 eV Total energy + Delta-G solvation = -3943.223301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -44.56812 -41.20597 -39.22017 -38.11010 -36.89775 -36.03376 -34.55641 -33.44699 -31.88683 -31.37516 -28.81356 -27.42823 -26.29887 -25.29667 -24.80412 -23.78744 -23.27403 -22.23105 -21.93565 -21.08357 -20.32693 -19.18595 -18.77115 -18.03796 -17.81192 -17.15126 -16.70190 -16.65851 -16.59479 -16.02647 -15.49584 -15.43319 -15.29425 -15.06024 -14.75798 -14.46733 -14.35446 -14.02526 -13.59753 -13.41148 -13.25597 -13.12571 -12.90470 -12.69694 -12.68496 -12.45342 -12.43306 -12.29700 -12.11297 -11.99677 -11.83304 -11.80851 -11.60468 -11.58576 -11.51934 -11.29025 -11.20505 -10.94389 -10.08452 -9.73374 -9.01188 -7.96913 -5.25691 -0.04116 0.80859 1.42946 1.46097 1.46978 1.57381 1.75967 2.07711 2.54537 2.58546 2.90903 3.30048 3.36554 3.54752 3.64624 3.68167 3.74163 3.79938 3.96943 4.09391 4.14033 4.23653 4.28113 4.38708 4.45532 4.48047 4.55050 4.58519 4.66890 4.70081 4.77745 4.78409 4.83591 4.89881 4.90458 4.96548 5.04958 5.08621 5.13244 5.18949 5.21510 5.27952 5.36205 5.39338 5.48521 5.53655 6.26252 6.28618 6.42130 6.87833 7.32238 8.08235 8.32318 9.26767 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.002012 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.015265 B =13910.897845 C =14693.870976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.098 0.902 4 C 0.111 3.889 5 N -0.605 5.605 6 C 0.610 3.390 7 O -0.576 6.576 8 C -0.094 4.094 9 C 0.028 3.972 10 O -0.193 6.193 11 C 0.231 3.769 12 C -0.093 4.093 13 C -0.151 4.151 14 C -0.150 4.150 15 N -0.470 5.470 16 C 0.108 3.892 17 C -0.080 4.080 18 H 0.079 0.921 19 C -0.097 4.097 20 C 0.149 3.851 21 N -0.747 5.747 22 C -0.248 4.248 23 H 0.072 0.928 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.974 3.026 27 H -0.269 1.269 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.255 0.745 36 H 0.161 0.839 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.375 0.625 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.386 -8.989 -33.461 36.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 H 0.116 0.884 4 C -0.011 4.011 5 N -0.336 5.336 6 C 0.399 3.601 7 O -0.457 6.457 8 C -0.212 4.212 9 C -0.046 4.046 10 O -0.079 6.079 11 C 0.022 3.978 12 C -0.111 4.111 13 C -0.188 4.188 14 C -0.188 4.188 15 N -0.199 5.199 16 C -0.014 4.014 17 C -0.100 4.100 18 H 0.097 0.903 19 C -0.135 4.135 20 C 0.023 3.977 21 N -0.389 5.389 22 C -0.380 4.380 23 H 0.090 0.910 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.803 3.197 27 H -0.193 1.193 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.271 0.729 36 H 0.178 0.822 37 H 0.150 0.850 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.150 0.850 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.207 0.793 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.183 -9.067 -32.929 35.938 hybrid contribution 0.989 -0.582 1.341 1.765 sum -10.193 -9.650 -31.588 34.566 Atomic orbital electron populations 1.21782 0.92917 1.01745 1.02863 1.22191 0.97418 0.99794 0.92196 0.88368 1.22497 0.96433 0.85844 0.96324 1.48624 1.52435 1.14913 1.17582 1.16664 0.79252 0.80774 0.83396 1.90810 1.42909 1.44238 1.67741 1.21531 1.07386 0.94749 0.97565 1.25709 0.95743 1.01024 0.82136 1.84388 1.52937 1.34194 1.36390 1.25915 0.96701 0.80087 0.95076 1.20577 0.99985 0.99586 0.90992 1.23236 1.00526 1.02397 0.92645 1.23254 0.91637 1.02271 1.01589 1.70752 1.14959 1.30712 1.03496 1.22577 0.97733 0.99303 0.81828 1.22130 0.96330 0.96864 0.94712 0.90254 1.21541 1.01423 0.97479 0.93098 1.20847 0.95935 0.92592 0.88348 1.42582 1.79106 1.05505 1.11736 1.19672 1.34765 0.92390 0.91156 0.91009 1.25579 1.03343 0.95668 1.02207 1.69812 1.55704 1.01790 1.34549 0.85066 0.77170 0.77822 0.79664 1.19328 1.21834 1.21708 0.93352 0.92081 0.90661 0.91063 0.88024 0.72928 0.82191 0.84976 0.88312 0.88887 0.85004 0.91382 0.90302 0.91448 0.90917 0.96639 0.96649 0.79269 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.90 71.98 0.64 -1.76 16 2 C -0.10 -1.99 3.17 -9.90 -0.03 -2.02 16 3 H 0.10 1.85 7.85 -2.38 -0.02 1.83 16 4 C 0.11 2.40 5.93 86.53 0.51 2.92 16 5 N -0.60 -16.61 3.29 -813.93 -2.68 -19.29 16 6 C 0.61 18.17 7.89 86.66 0.68 18.86 16 7 O -0.58 -20.54 17.10 -4.06 -0.07 -20.61 16 8 C -0.09 -2.24 6.84 40.41 0.28 -1.97 16 9 C 0.03 0.51 11.94 67.32 0.80 1.31 16 10 O -0.19 -3.15 10.40 0.28 0.00 -3.15 16 11 C 0.23 3.77 7.80 88.39 0.69 4.46 16 12 C -0.09 -0.80 6.33 -11.54 -0.07 -0.87 16 13 C -0.15 -0.68 10.16 30.59 0.31 -0.37 16 14 C -0.15 -0.76 10.23 30.60 0.31 -0.45 16 15 N -0.47 -9.92 8.55 -293.03 -2.51 -12.43 16 16 C 0.11 3.10 5.92 86.61 0.51 3.61 16 17 C -0.08 -2.10 2.58 -9.70 -0.02 -2.12 16 18 H 0.08 2.16 7.86 -2.39 -0.02 2.14 16 19 C -0.10 -3.05 4.70 30.60 0.14 -2.90 16 20 C 0.15 6.18 6.15 86.38 0.53 6.72 16 21 N -0.75 -39.38 5.60 -343.45 -1.92 -41.30 16 22 C -0.25 -14.43 9.99 84.04 0.84 -13.59 16 23 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 24 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 25 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 26 Si 0.97 47.41 29.55 68.60 2.03 49.44 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 2.16 5.69 -2.39 -0.01 2.14 16 35 H 0.25 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.10 0.58 7.94 -2.39 -0.02 0.56 16 39 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.13 0.17 8.14 -2.38 -0.02 0.15 16 41 H 0.07 2.22 7.83 -2.39 -0.02 2.20 16 42 H 0.08 2.24 7.93 -2.39 -0.02 2.23 16 43 H 0.07 2.11 7.99 -2.39 -0.02 2.09 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.02 0.66 7.67 -2.39 -0.02 0.64 16 47 H 0.38 20.67 7.67 -92.70 -0.71 19.95 16 48 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.50 396.95 1.98 -73.51 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.25 Total: 26.01 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 6.60 Total: 7.81 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -6.83 Total: -133.02 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.07 Total: -23.76 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -75.50 1.98 -73.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104761569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.494 kcal (2) G-P(sol) polarization free energy of solvation -75.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds