Wall clock time and date at job start Tue Mar 31 2020 17:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.29663 * 2 1 4 4 C 1.54390 * 110.34306 * 237.71570 * 2 1 3 5 5 N 1.48140 * 104.61426 * 264.99121 * 4 2 1 6 6 C 1.34781 * 127.83553 * 140.39618 * 5 4 2 7 7 O 1.21286 * 119.99665 * 179.97438 * 6 5 4 8 8 C 1.50695 * 120.00013 * 359.97438 * 6 5 4 9 9 N 1.46498 * 109.46893 * 180.02562 * 8 6 5 10 10 C 1.35760 * 119.62617 * 269.72262 * 9 8 6 11 11 C 1.35349 * 120.70095 * 179.76310 * 10 9 8 12 12 C 1.40193 * 119.95380 * 0.51116 * 11 10 9 13 13 C 1.36404 * 119.26289 * 359.75062 * 12 11 10 14 14 C 1.34662 * 119.62534 * 90.00322 * 9 8 6 15 15 O 1.22062 * 119.98794 * 359.97438 * 14 9 8 16 16 C 1.48145 * 104.32775 * 320.41323 * 5 4 2 17 17 C 1.54281 * 110.34387 * 122.17261 * 2 1 3 18 18 H 1.09002 * 110.34302 * 0.02562 * 17 2 1 19 19 C 1.52998 * 110.34397 * 237.84933 * 17 2 1 20 20 C 1.52994 * 109.47213 * 176.47750 * 19 17 2 21 21 N 1.46506 * 109.47345 * 180.02562 * 20 19 17 22 22 C 1.36934 * 119.99858 * 179.97438 * 21 20 19 23 23 H 1.07995 * 120.00381 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99885 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99751 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00290 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46592 * 60.00700 * 26 24 22 28 28 H 1.48496 * 109.47512 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47301 * 300.00867 * 26 24 22 30 30 H 1.08996 * 109.47126 * 297.82178 * 1 2 3 31 31 H 1.08995 * 109.47333 * 57.82836 * 1 2 3 32 32 H 1.09000 * 109.46800 * 177.82636 * 1 2 3 33 33 H 1.08998 * 110.40404 * 23.77673 * 4 2 1 34 34 H 1.08999 * 110.40301 * 146.08810 * 4 2 1 35 35 H 1.09002 * 109.47181 * 299.99934 * 8 6 5 36 36 H 1.08996 * 109.47476 * 60.00171 * 8 6 5 37 37 H 1.08005 * 119.64965 * 0.02562 * 10 9 8 38 38 H 1.08002 * 120.02305 * 180.23578 * 11 10 9 39 39 H 1.07999 * 120.37103 * 179.76885 * 12 11 10 40 40 H 1.07990 * 120.35164 * 180.02562 * 13 12 11 41 41 H 1.08990 * 110.41068 * 280.80521 * 16 5 4 42 42 H 1.09000 * 110.40585 * 158.36660 * 16 5 4 43 43 H 1.09003 * 109.47249 * 296.47571 * 19 17 2 44 44 H 1.09002 * 109.47127 * 56.47409 * 19 17 2 45 45 H 1.09002 * 109.47391 * 300.00046 * 20 19 17 46 46 H 1.09002 * 109.47352 * 59.99797 * 20 19 17 47 47 H 0.96995 * 119.99928 * 359.97438 * 21 20 19 48 48 H 0.97010 * 120.00273 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0668 -0.7732 -1.2238 5 7 2.3141 -2.1444 -0.7206 6 6 2.0772 -3.3117 -1.3513 7 8 2.3365 -4.3614 -0.8016 8 6 1.4903 -3.3128 -2.7392 9 7 1.3299 -4.6939 -3.2005 10 6 2.3408 -5.2975 -3.8763 11 6 2.2178 -6.5743 -4.3082 12 6 1.0325 -7.2834 -4.0680 13 6 0.0158 -6.6736 -3.3934 14 6 0.1791 -5.3485 -2.9543 15 8 -0.7227 -4.7909 -2.3496 16 6 2.8804 -1.9415 0.6332 17 6 2.0664 -0.7703 1.2244 18 1 1.2399 -1.1490 1.8257 19 6 2.9671 0.1336 2.0687 20 6 3.4166 -0.6211 3.3214 21 7 4.2785 0.2446 4.1301 22 6 4.8037 -0.2189 5.3067 23 1 4.5829 -1.2227 5.6384 24 6 5.6209 0.6011 6.0727 25 7 5.8904 1.8242 5.6683 26 14 6.3368 -0.0308 7.6782 27 1 7.1779 -1.2247 7.4090 28 1 7.1679 1.0304 8.3013 29 1 5.2334 -0.4005 8.6007 30 1 -0.3633 0.4796 0.9088 31 1 -0.3634 0.5472 -0.8698 32 1 -0.3633 -1.0269 -0.0390 33 1 1.3223 -0.7889 -2.0198 34 1 2.9938 -0.3242 -1.5803 35 1 0.5180 -2.8203 -2.7229 36 1 2.1569 -2.7784 -3.4160 37 1 3.2546 -4.7545 -4.0676 38 1 3.0305 -7.0451 -4.8415 39 1 0.9257 -8.3012 -4.4129 40 1 -0.9047 -7.2035 -3.1983 41 1 3.9355 -1.6763 0.5681 42 1 2.7496 -2.8387 1.2383 43 1 3.8414 0.4223 1.4853 44 1 2.4144 1.0264 2.3610 45 1 2.5423 -0.9099 3.9048 46 1 3.9693 -1.5139 3.0290 47 1 4.4772 1.1460 3.8321 48 1 6.4612 2.3975 6.2037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104995869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:46 Heat of formation + Delta-G solvation = -20.365412 kcal Electronic energy + Delta-G solvation = -28342.245718 eV Core-core repulsion = 24398.053447 eV Total energy + Delta-G solvation = -3944.192272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78568 -40.18328 -38.19292 -37.15159 -35.16198 -34.85267 -33.24368 -32.05514 -30.47096 -30.17570 -29.07391 -26.88396 -26.59972 -24.52295 -24.07400 -23.04807 -22.56277 -20.82678 -19.98212 -19.79100 -17.91847 -17.72427 -17.57917 -17.07748 -16.67223 -16.04130 -15.89994 -15.37618 -14.87432 -14.67337 -14.60958 -14.51837 -14.38618 -13.67128 -13.49114 -13.34349 -13.22013 -13.01068 -12.88475 -12.65775 -12.37900 -12.27689 -12.16302 -12.09225 -11.82329 -11.33581 -11.26225 -11.03271 -10.82707 -10.81096 -10.56975 -10.45112 -10.34866 -10.24583 -10.00579 -9.96481 -9.65317 -8.93241 -8.84836 -8.29807 -6.90780 -5.75264 -3.03691 0.49651 1.58904 2.06964 2.28592 2.74730 3.39263 3.45791 3.49690 3.51068 4.04886 4.15300 4.21085 4.34613 4.50092 4.54821 4.62851 4.65419 4.69886 4.82731 4.92630 4.98151 5.03569 5.16857 5.26423 5.37216 5.41030 5.52729 5.58103 5.59042 5.70062 5.71129 5.74991 5.83798 5.85633 5.94491 6.00391 6.06948 6.14305 6.16726 6.25733 6.37539 6.42879 6.71711 6.84767 6.88652 7.27445 7.71627 7.72723 7.83976 8.44056 9.54965 10.13117 10.47734 11.47653 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.002142 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.648404 B =13067.015912 C =13893.848085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.092 0.908 4 C 0.100 3.900 5 N -0.618 5.618 6 C 0.521 3.479 7 O -0.528 6.528 8 C 0.075 3.925 9 N -0.481 5.481 10 C 0.141 3.859 11 C -0.232 4.232 12 C -0.016 4.016 13 C -0.241 4.241 14 C 0.519 3.481 15 O -0.550 6.550 16 C 0.111 3.889 17 C -0.093 4.093 18 H 0.083 0.917 19 C -0.115 4.115 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.135 0.865 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.567 -10.222 -27.550 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.110 0.890 4 C -0.023 4.023 5 N -0.353 5.353 6 C 0.308 3.692 7 O -0.404 6.404 8 C -0.050 4.050 9 N -0.191 5.191 10 C 0.015 3.985 11 C -0.255 4.255 12 C -0.037 4.037 13 C -0.263 4.263 14 C 0.321 3.679 15 O -0.432 6.432 16 C -0.011 4.011 17 C -0.112 4.112 18 H 0.101 0.899 19 C -0.154 4.154 20 C 0.023 3.977 21 N -0.378 5.378 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.178 0.822 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.166 0.834 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.995 -10.613 -26.761 30.475 hybrid contribution 0.658 0.013 0.866 1.088 sum -9.337 -10.600 -25.895 29.498 Atomic orbital electron populations 1.21860 0.94243 1.01992 1.02075 1.22198 0.96409 0.99807 0.93857 0.88953 1.22606 1.00850 0.81582 0.97264 1.48953 1.62853 1.05177 1.18298 1.20186 0.78703 0.82816 0.87517 1.90779 1.52142 1.30378 1.67056 1.21759 1.05537 0.83098 0.94636 1.45060 1.14901 1.13560 1.45616 1.21927 0.91521 0.94613 0.90471 1.20639 1.00670 0.94188 1.10013 1.21449 0.91677 0.99471 0.91118 1.22100 1.02585 0.94857 1.06765 1.17171 0.81234 0.88091 0.81389 1.90968 1.40078 1.69070 1.43076 1.22556 0.97535 0.99242 0.81740 1.22173 0.98535 0.94935 0.95598 0.89850 1.21803 0.98566 0.98263 0.96721 1.20688 0.93407 0.93435 0.90172 1.42354 1.57319 1.14732 1.23398 1.19201 1.22829 0.97806 0.97170 0.91267 1.24744 1.00883 0.96229 0.99263 1.69649 1.41922 1.07320 1.39493 0.86255 0.78792 0.77502 0.83585 1.21261 1.21679 1.21261 0.91942 0.92612 0.92622 0.90398 0.90341 0.85287 0.86118 0.82235 0.83637 0.84736 0.83405 0.90232 0.89791 0.91637 0.91345 0.96442 0.96380 0.78339 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.90 37.16 0.33 -0.96 16 2 C -0.10 -0.95 3.31 -89.22 -0.30 -1.25 16 3 H 0.09 0.79 7.71 -51.93 -0.40 0.39 16 4 C 0.10 0.78 6.46 -2.41 -0.02 0.76 16 5 N -0.62 -6.88 3.32 -169.31 -0.56 -7.44 16 6 C 0.52 6.48 7.98 -10.99 -0.09 6.39 16 7 O -0.53 -8.97 16.70 5.55 0.09 -8.88 16 8 C 0.08 0.64 4.79 -5.20 -0.02 0.61 16 9 N -0.48 -4.75 2.07 -121.07 -0.25 -5.00 16 10 C 0.14 0.96 10.28 -16.84 -0.17 0.79 16 11 C -0.23 -1.40 10.01 -39.88 -0.40 -1.79 16 12 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 13 C -0.24 -2.39 9.99 -39.37 -0.39 -2.79 16 14 C 0.52 6.63 7.40 -15.44 -0.11 6.52 16 15 O -0.55 -9.08 16.64 4.86 0.08 -9.00 16 16 C 0.11 1.44 5.80 -2.41 -0.01 1.42 16 17 C -0.09 -1.13 2.73 -89.22 -0.24 -1.37 16 18 H 0.08 1.10 7.71 -51.93 -0.40 0.70 16 19 C -0.12 -1.73 4.51 -26.74 -0.12 -1.85 16 20 C 0.15 3.02 6.12 -4.04 -0.02 2.99 16 21 N -0.73 -18.82 5.60 -59.91 -0.34 -19.15 16 22 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 25 N -0.94 -28.49 13.06 55.49 0.72 -27.76 16 26 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.44 7.02 -51.93 -0.36 0.07 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.13 1.10 7.20 -51.93 -0.37 0.73 16 36 H 0.12 0.48 8.01 -51.93 -0.42 0.07 16 37 H 0.16 0.55 8.03 -52.48 -0.42 0.13 16 38 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 39 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.08 1.03 7.78 -51.93 -0.40 0.63 16 42 H 0.08 1.27 7.88 -51.93 -0.41 0.86 16 43 H 0.06 0.97 8.02 -51.93 -0.42 0.55 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.37 7.54 -51.93 -0.39 -0.02 16 47 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -38.47 395.87 -9.19 -47.66 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.66 Total: 4.42 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.22 Total: 1.45 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.42 Total: -59.35 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.17 Total: -17.88 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.47 -9.19 -47.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104995869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.293 kcal (2) G-P(sol) polarization free energy of solvation -38.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds