Wall clock time and date at job start Tue Mar 31 2020 17:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.30393 * 2 1 4 4 C 1.54385 * 110.34047 * 237.82303 * 2 1 3 5 5 N 1.48415 * 104.48688 * 217.17999 * 4 2 1 6 6 C 1.34779 * 127.82623 * 219.60689 * 5 4 2 7 7 O 1.21624 * 119.99781 * 180.02562 * 6 5 4 8 8 C 1.43194 * 120.00078 * 359.97438 * 6 5 4 9 9 C 5.02749 * 130.56400 * 259.24694 * 2 1 3 10 10 C 6.17733 * 124.16285 * 268.02392 * 2 1 3 11 11 C 1.53003 * 117.50081 * 33.51638 * 10 9 8 12 12 C 1.52998 * 59.99946 * 252.50527 * 11 10 9 13 13 C 1.48150 * 104.33809 * 39.60850 * 5 4 2 14 14 C 1.54281 * 110.34394 * 122.17550 * 2 1 3 15 15 H 1.09002 * 110.34601 * 0.10662 * 14 2 1 16 16 C 1.53002 * 110.34627 * 237.84696 * 14 2 1 17 17 N 1.46902 * 109.47511 * 175.00047 * 16 14 2 18 18 C 1.46901 * 111.00066 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46836 * 180.02562 * 18 17 16 20 20 O 1.21287 * 120.00173 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99575 * 179.97438 * 19 18 17 22 22 C 1.37091 * 119.99897 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99770 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00297 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00119 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99668 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47236 * 90.00251 * 26 24 22 28 28 H 1.48506 * 109.46782 * 210.00330 * 26 24 22 29 29 H 1.48498 * 109.47103 * 329.99972 * 26 24 22 30 30 H 1.09005 * 109.47312 * 299.29673 * 1 2 3 31 31 H 1.08998 * 109.47322 * 59.29640 * 1 2 3 32 32 H 1.09005 * 109.47284 * 179.30031 * 1 2 3 33 33 H 1.08997 * 110.41271 * 335.94204 * 4 2 1 34 34 H 1.09004 * 110.40474 * 98.37591 * 4 2 1 35 35 H 1.09003 * 115.54862 * 179.22092 * 10 9 8 36 36 H 1.08997 * 117.49510 * 359.97438 * 11 10 9 37 37 H 1.08996 * 117.49805 * 145.01827 * 11 10 9 38 38 H 1.09002 * 117.50277 * 252.50871 * 12 11 10 39 39 H 1.09000 * 117.52101 * 107.47465 * 12 11 10 40 40 H 1.08999 * 110.41112 * 201.60110 * 13 5 4 41 41 H 1.09001 * 110.50499 * 79.22146 * 13 5 4 42 42 H 1.09003 * 109.47020 * 295.00252 * 16 14 2 43 43 H 1.08996 * 109.47039 * 55.00110 * 16 14 2 44 44 H 1.00899 * 110.99804 * 56.04319 * 17 16 14 45 45 H 1.09003 * 109.46777 * 299.99714 * 18 17 16 46 46 H 1.09000 * 109.46880 * 59.99500 * 18 17 16 47 47 H 0.97004 * 119.99817 * 0.02562 * 21 19 18 48 48 H 0.97001 * 120.00032 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7709 -1.2252 5 7 3.2692 -1.4794 -0.7206 6 6 4.4462 -1.6621 -1.3512 7 8 5.3434 -2.2707 -0.7999 8 6 4.6401 -1.1409 -2.6708 9 6 4.7993 -0.7126 -3.7522 10 6 4.9988 -0.1763 -5.1084 11 6 5.9144 -0.9604 -6.0506 12 6 6.3858 0.3681 -5.4559 13 6 2.8824 -1.9400 0.6333 14 6 2.0663 -0.7703 1.2244 15 1 1.2398 -1.1504 1.8249 16 6 2.9671 0.1334 2.0687 17 7 3.3700 -0.5788 3.2887 18 6 4.2373 0.2606 4.1262 19 6 4.6297 -0.5022 5.3653 20 8 4.2262 -1.6334 5.5343 21 7 5.4291 0.0728 6.2856 22 6 5.7857 -0.6208 7.4130 23 1 5.4264 -1.6281 7.5635 24 6 6.6094 -0.0279 8.3621 25 7 6.9516 -0.6930 9.4426 26 14 7.2302 1.7146 8.1020 27 1 6.2687 2.6767 8.6978 28 1 8.5551 1.8705 8.7545 29 1 7.3604 1.9817 6.6471 30 1 -0.3634 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8836 32 1 -0.3634 -1.0276 -0.0125 33 1 1.3241 -1.4859 -1.5796 34 1 2.3383 -0.0776 -2.0213 35 1 4.1366 0.3263 -5.5467 36 1 6.3693 -1.8732 -5.6661 37 1 5.6545 -0.9739 -7.1091 38 1 6.4361 1.2286 -6.1231 39 1 7.1505 0.3295 -4.6801 40 1 3.7692 -2.1289 1.2383 41 1 2.2682 -2.8383 0.5700 42 1 3.8541 0.4009 1.4944 43 1 2.4229 1.0382 2.3392 44 1 3.8199 -1.4537 3.0648 45 1 5.1331 0.5292 3.5664 46 1 3.7015 1.1661 4.4108 47 1 5.7514 0.9777 6.1505 48 1 7.5263 -0.2789 10.1053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106101130.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:01 Heat of formation + Delta-G solvation = 17.133485 kcal Electronic energy + Delta-G solvation = -27402.563549 eV Core-core repulsion = 23459.997352 eV Total energy + Delta-G solvation = -3942.566197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48563 -38.59850 -38.20392 -38.01569 -35.39235 -33.88745 -33.40099 -32.79085 -31.63569 -30.55372 -27.53306 -26.83007 -25.81325 -24.50305 -23.59546 -22.99288 -22.11922 -21.13928 -20.04538 -19.34238 -18.48593 -18.18505 -17.23024 -16.73330 -16.25666 -15.92147 -15.48646 -15.44187 -14.99322 -14.74613 -14.37206 -14.23312 -13.91568 -13.60606 -13.26541 -13.18203 -13.09466 -12.92116 -12.49660 -12.47065 -12.41803 -12.27201 -12.10589 -12.00406 -11.81345 -11.79175 -11.61828 -11.16298 -11.06606 -10.92862 -10.83091 -10.73278 -10.56313 -10.37671 -10.20243 -9.93957 -9.53614 -9.08039 -8.55644 -8.16341 -8.11419 -6.27494 -3.78642 1.16249 1.86363 2.55869 2.92642 3.05805 3.09582 3.17510 3.56233 3.58167 3.78160 3.97230 4.13529 4.19106 4.20413 4.27557 4.37733 4.47928 4.53296 4.85737 4.87825 4.92424 5.02330 5.05006 5.05484 5.11260 5.22980 5.25726 5.29407 5.38904 5.44403 5.48399 5.50796 5.53664 5.61837 5.66269 5.69678 5.78566 5.82994 5.84231 5.90792 5.96887 6.16980 6.83530 7.09798 7.12932 7.57714 7.62078 7.77121 8.18386 8.63653 8.98752 9.46278 9.86766 10.85694 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012377 B = 0.002171 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.788899 B =12895.588005 C =14172.048033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.084 0.916 4 C 0.104 3.896 5 N -0.614 5.614 6 C 0.651 3.349 7 O -0.518 6.518 8 C -0.209 4.209 9 C -0.057 4.057 10 C -0.067 4.067 11 C -0.159 4.159 12 C -0.159 4.159 13 C 0.109 3.891 14 C -0.096 4.096 15 H 0.105 0.895 16 C 0.067 3.933 17 N -0.669 5.669 18 C 0.048 3.952 19 C 0.451 3.549 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.040 3.960 25 N -0.882 5.882 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.350 0.650 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 6.888 -32.274 34.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.102 0.898 4 C -0.018 4.018 5 N -0.348 5.348 6 C 0.440 3.560 7 O -0.395 6.395 8 C -0.211 4.211 9 C -0.059 4.059 10 C -0.084 4.084 11 C -0.196 4.196 12 C -0.196 4.196 13 C -0.013 4.013 14 C -0.116 4.116 15 H 0.123 0.877 16 C -0.063 4.063 17 N -0.302 5.302 18 C -0.085 4.085 19 C 0.236 3.764 20 O -0.445 6.445 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.154 0.846 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.045 0.955 43 H 0.094 0.906 44 H 0.170 0.830 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.399 5.898 -31.325 33.529 hybrid contribution 1.405 1.483 -0.517 2.107 sum -8.994 7.381 -31.842 33.901 Atomic orbital electron populations 1.21821 0.93432 1.02391 1.02320 1.22132 0.96539 0.99803 0.93606 0.89782 1.22617 0.86509 0.95682 0.97031 1.48807 1.12289 1.55637 1.18025 1.14160 0.81106 0.79301 0.81422 1.90920 1.41198 1.41215 1.66137 1.20485 1.02956 1.03544 0.94161 1.21313 0.98052 0.94251 0.92291 1.18929 0.96637 1.05293 0.87575 1.23122 1.01439 0.96413 0.98643 1.23127 0.95014 0.98022 1.03455 1.22530 0.99966 0.97010 0.81785 1.22275 0.98820 0.95128 0.95355 0.87724 1.22012 0.97420 0.96796 0.90037 1.60138 1.46153 1.06848 1.17048 1.21699 0.95561 0.96921 0.94305 1.19702 0.83255 0.88142 0.85272 1.90562 1.56753 1.19003 1.78211 1.42203 1.45267 1.15376 1.20231 1.19437 1.27815 1.01316 0.94691 0.86264 1.25040 0.97265 0.98322 0.95600 1.69624 1.35875 1.37259 1.09437 0.86665 0.79554 0.84746 0.78391 1.19612 1.20202 1.19548 0.91663 0.92439 0.92121 0.90376 0.90329 0.84637 0.87981 0.87270 0.87253 0.87956 0.89331 0.90137 0.95497 0.90639 0.82965 0.93827 0.89445 0.79711 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.91 37.16 0.33 -0.44 16 2 C -0.10 -0.71 3.30 -89.22 -0.29 -1.00 16 3 H 0.08 0.59 7.71 -51.93 -0.40 0.19 16 4 C 0.10 0.78 6.45 -2.26 -0.01 0.76 16 5 N -0.61 -6.77 3.32 -171.94 -0.57 -7.34 16 6 C 0.65 9.02 7.76 -14.34 -0.11 8.91 16 7 O -0.52 -9.30 17.35 5.26 0.09 -9.21 16 8 C -0.21 -2.47 12.51 -38.84 -0.49 -2.95 16 9 C -0.06 -0.54 13.47 -37.13 -0.50 -1.04 16 10 C -0.07 -0.39 6.22 -93.41 -0.58 -0.97 16 11 C -0.16 -0.75 10.21 -26.73 -0.27 -1.03 16 12 C -0.16 -0.78 10.21 -26.73 -0.27 -1.05 16 13 C 0.11 1.19 6.44 -2.41 -0.02 1.18 16 14 C -0.10 -0.91 2.95 -89.22 -0.26 -1.18 16 15 H 0.10 1.00 7.71 -51.93 -0.40 0.59 16 16 C 0.07 0.79 4.88 -3.82 -0.02 0.77 16 17 N -0.67 -10.60 6.13 -115.05 -0.70 -11.30 16 18 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 19 C 0.45 10.60 7.82 -10.98 -0.09 10.51 16 20 O -0.56 -15.55 15.78 5.55 0.09 -15.47 16 21 N -0.59 -14.54 5.09 -10.96 -0.06 -14.60 16 22 C -0.30 -8.82 10.16 -14.94 -0.15 -8.97 16 23 H 0.12 3.94 7.39 -52.48 -0.39 3.55 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -26.25 13.96 55.50 0.77 -25.48 16 26 Si 0.88 19.84 27.74 -169.99 -4.71 15.12 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.08 0.48 7.85 -51.93 -0.41 0.07 16 34 H 0.08 0.53 7.45 -51.93 -0.39 0.14 16 35 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.19 6.27 -51.93 -0.33 0.87 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.34 8.13 -51.93 -0.42 -0.09 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.35 5.95 6.90 -39.29 -0.27 5.68 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.37 8.01 5.76 -40.82 -0.24 7.77 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 404.23 15.07 6.09 6.09 Total: -1.00 -36.40 404.23 -9.34 -45.74 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -7.48 Total: 11.10 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -2.86 Total: 5.35 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.56 Total: -58.72 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.18 Total: -24.68 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.71 Total: 15.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.40 -9.34 -45.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106101130.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.876 kcal (2) G-P(sol) polarization free energy of solvation -36.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds