Wall clock time and date at job start Tue Mar 31 2020 17:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.30393 * 2 1 4 4 C 1.54385 * 110.34047 * 237.82303 * 2 1 3 5 5 N 1.48415 * 104.48688 * 217.17999 * 4 2 1 6 6 C 1.34779 * 127.82623 * 219.60689 * 5 4 2 7 7 O 1.21624 * 119.99781 * 180.02562 * 6 5 4 8 8 C 1.43194 * 120.00078 * 359.97438 * 6 5 4 9 9 C 5.02749 * 130.56400 * 259.24694 * 2 1 3 10 10 C 6.17733 * 124.16285 * 268.02392 * 2 1 3 11 11 C 1.53003 * 117.50081 * 33.51638 * 10 9 8 12 12 C 1.52998 * 59.99946 * 252.50527 * 11 10 9 13 13 C 1.48150 * 104.33809 * 39.60850 * 5 4 2 14 14 C 1.54281 * 110.34394 * 122.17550 * 2 1 3 15 15 H 1.09002 * 110.34601 * 0.10662 * 14 2 1 16 16 C 1.53002 * 110.34627 * 237.84696 * 14 2 1 17 17 N 1.46902 * 109.47511 * 175.00047 * 16 14 2 18 18 C 1.46901 * 111.00066 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46836 * 180.02562 * 18 17 16 20 20 O 1.21287 * 120.00173 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99575 * 179.97438 * 19 18 17 22 22 C 1.37091 * 119.99897 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99770 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00297 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00119 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99668 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47236 * 90.00251 * 26 24 22 28 28 H 1.48506 * 109.46782 * 210.00330 * 26 24 22 29 29 H 1.48498 * 109.47103 * 329.99972 * 26 24 22 30 30 H 1.09005 * 109.47312 * 299.29673 * 1 2 3 31 31 H 1.08998 * 109.47322 * 59.29640 * 1 2 3 32 32 H 1.09005 * 109.47284 * 179.30031 * 1 2 3 33 33 H 1.08997 * 110.41271 * 335.94204 * 4 2 1 34 34 H 1.09004 * 110.40474 * 98.37591 * 4 2 1 35 35 H 1.09003 * 115.54862 * 179.22092 * 10 9 8 36 36 H 1.08997 * 117.49510 * 359.97438 * 11 10 9 37 37 H 1.08996 * 117.49805 * 145.01827 * 11 10 9 38 38 H 1.09002 * 117.50277 * 252.50871 * 12 11 10 39 39 H 1.09000 * 117.52101 * 107.47465 * 12 11 10 40 40 H 1.08999 * 110.41112 * 201.60110 * 13 5 4 41 41 H 1.09001 * 110.50499 * 79.22146 * 13 5 4 42 42 H 1.09003 * 109.47020 * 295.00252 * 16 14 2 43 43 H 1.08996 * 109.47039 * 55.00110 * 16 14 2 44 44 H 1.00899 * 110.99804 * 56.04319 * 17 16 14 45 45 H 1.09003 * 109.46777 * 299.99714 * 18 17 16 46 46 H 1.09000 * 109.46880 * 59.99500 * 18 17 16 47 47 H 0.97004 * 119.99817 * 0.02562 * 21 19 18 48 48 H 0.97001 * 120.00032 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7709 -1.2252 5 7 3.2692 -1.4794 -0.7206 6 6 4.4462 -1.6621 -1.3512 7 8 5.3434 -2.2707 -0.7999 8 6 4.6401 -1.1409 -2.6708 9 6 4.7993 -0.7126 -3.7522 10 6 4.9988 -0.1763 -5.1084 11 6 5.9144 -0.9604 -6.0506 12 6 6.3858 0.3681 -5.4559 13 6 2.8824 -1.9400 0.6333 14 6 2.0663 -0.7703 1.2244 15 1 1.2398 -1.1504 1.8249 16 6 2.9671 0.1334 2.0687 17 7 3.3700 -0.5788 3.2887 18 6 4.2373 0.2606 4.1262 19 6 4.6297 -0.5022 5.3653 20 8 4.2262 -1.6334 5.5343 21 7 5.4291 0.0728 6.2856 22 6 5.7857 -0.6208 7.4130 23 1 5.4264 -1.6281 7.5635 24 6 6.6094 -0.0279 8.3621 25 7 6.9516 -0.6930 9.4426 26 14 7.2302 1.7146 8.1020 27 1 6.2687 2.6767 8.6978 28 1 8.5551 1.8705 8.7545 29 1 7.3604 1.9817 6.6471 30 1 -0.3634 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8836 32 1 -0.3634 -1.0276 -0.0125 33 1 1.3241 -1.4859 -1.5796 34 1 2.3383 -0.0776 -2.0213 35 1 4.1366 0.3263 -5.5467 36 1 6.3693 -1.8732 -5.6661 37 1 5.6545 -0.9739 -7.1091 38 1 6.4361 1.2286 -6.1231 39 1 7.1505 0.3295 -4.6801 40 1 3.7692 -2.1289 1.2383 41 1 2.2682 -2.8383 0.5700 42 1 3.8541 0.4009 1.4944 43 1 2.4229 1.0382 2.3392 44 1 3.8199 -1.4537 3.0648 45 1 5.1331 0.5292 3.5664 46 1 3.7015 1.1661 4.4108 47 1 5.7514 0.9777 6.1505 48 1 7.5263 -0.2789 10.1053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106101130.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:00 Heat of formation + Delta-G solvation = -9.703317 kcal Electronic energy + Delta-G solvation = -27403.727280 eV Core-core repulsion = 23459.997352 eV Total energy + Delta-G solvation = -3943.729928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38311 -40.33253 -39.27459 -38.52677 -36.69190 -35.88325 -34.28699 -33.77561 -33.51131 -31.52003 -28.83359 -27.55125 -27.06883 -25.59374 -24.85977 -23.33399 -22.95828 -21.87077 -21.36606 -20.81915 -20.28792 -19.15264 -18.06993 -17.83313 -17.45502 -17.09886 -16.84374 -16.60390 -15.91383 -15.87840 -15.53582 -15.45901 -15.17397 -14.90312 -14.71634 -14.42916 -14.10379 -13.70207 -13.63092 -13.52033 -13.46405 -13.17564 -13.05123 -13.01766 -12.74542 -12.53133 -12.46837 -12.44179 -12.38552 -12.00899 -11.81072 -11.67220 -11.61504 -11.53984 -11.52850 -11.08009 -10.81892 -10.47652 -10.27684 -9.96694 -9.41838 -8.43680 -6.04798 0.29796 1.07556 1.28145 1.33402 1.42384 1.72049 1.91380 2.15648 2.20821 2.66632 2.87619 3.04056 3.11819 3.30599 3.48869 3.56820 3.79139 3.80570 3.93943 3.98163 4.11221 4.13045 4.25987 4.34893 4.37990 4.40128 4.44953 4.48945 4.60348 4.68760 4.73762 4.75691 4.81759 4.86450 4.88484 4.94787 5.06058 5.17459 5.17896 5.20098 5.33902 5.49681 5.53349 5.86045 5.98999 6.05860 6.23861 6.26299 6.56593 6.78474 6.84731 7.35983 7.92304 8.73994 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012377 B = 0.002171 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.788899 B =12895.588005 C =14172.048033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.091 0.909 4 C 0.103 3.897 5 N -0.610 5.610 6 C 0.645 3.355 7 O -0.580 6.580 8 C -0.263 4.263 9 C -0.021 4.021 10 C -0.081 4.081 11 C -0.154 4.154 12 C -0.156 4.156 13 C 0.103 3.897 14 C -0.089 4.089 15 H 0.108 0.892 16 C 0.070 3.930 17 N -0.683 5.683 18 C 0.061 3.939 19 C 0.447 3.553 20 O -0.613 6.613 21 N -0.590 5.590 22 C -0.330 4.330 23 H 0.055 0.945 24 C -0.016 4.016 25 N -0.933 5.933 26 Si 0.967 3.033 27 H -0.253 1.253 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.168 0.832 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.096 0.904 44 H 0.338 0.662 45 H 0.065 0.935 46 H 0.121 0.879 47 H 0.390 0.610 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.499 11.084 -35.927 39.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.109 0.891 4 C -0.019 4.019 5 N -0.341 5.341 6 C 0.436 3.564 7 O -0.462 6.462 8 C -0.265 4.265 9 C -0.023 4.023 10 C -0.099 4.099 11 C -0.191 4.191 12 C -0.192 4.192 13 C -0.019 4.019 14 C -0.108 4.108 15 H 0.126 0.874 16 C -0.058 4.058 17 N -0.315 5.315 18 C -0.071 4.071 19 C 0.235 3.765 20 O -0.498 6.498 21 N -0.232 5.232 22 C -0.460 4.460 23 H 0.073 0.927 24 C -0.214 4.214 25 N -0.573 5.573 26 Si 0.786 3.214 27 H -0.177 1.177 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.185 0.815 36 H 0.105 0.895 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.039 0.961 43 H 0.114 0.886 44 H 0.157 0.843 45 H 0.083 0.917 46 H 0.139 0.861 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.689 10.131 -35.010 38.275 hybrid contribution 1.727 0.053 0.559 1.816 sum -9.962 10.183 -34.451 37.280 Atomic orbital electron populations 1.21799 0.91687 1.02871 1.03148 1.22095 0.97750 0.99466 0.91595 0.89076 1.22894 0.85222 0.96167 0.97584 1.48907 1.12505 1.54840 1.17841 1.14488 0.81131 0.78708 0.82122 1.90866 1.43281 1.44248 1.67778 1.20294 1.05651 1.06044 0.94546 1.22132 0.95580 0.92049 0.92556 1.19377 0.98409 1.06321 0.85773 1.23238 1.00364 0.95722 0.99734 1.23236 0.93540 0.99162 1.03287 1.22582 0.99024 0.98501 0.81774 1.22236 0.98078 0.94426 0.96076 0.87382 1.22120 0.97665 0.97503 0.88527 1.60203 1.45578 1.06747 1.18969 1.21638 0.97252 0.96826 0.91409 1.20964 0.81358 0.87815 0.86387 1.90538 1.58107 1.21588 1.79518 1.42026 1.45852 1.16015 1.19298 1.19015 1.29648 0.99800 0.97502 0.92703 1.26142 0.96506 1.04437 0.94362 1.69805 1.36585 1.40231 1.10723 0.85343 0.78792 0.76752 0.80490 1.17740 1.19891 1.15867 0.91690 0.90728 0.91898 0.88557 0.89088 0.81492 0.89544 0.84515 0.84572 0.89635 0.92573 0.89038 0.96085 0.88575 0.84283 0.91679 0.86096 0.77477 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.91 71.98 0.64 -0.40 16 2 C -0.09 -1.02 3.30 -9.89 -0.03 -1.05 16 3 H 0.09 0.97 7.71 -2.39 -0.02 0.95 16 4 C 0.10 1.32 6.45 86.48 0.56 1.88 16 5 N -0.61 -13.58 3.32 -816.16 -2.71 -16.29 16 6 C 0.64 18.89 7.76 85.49 0.66 19.56 16 7 O -0.58 -22.68 17.35 -4.11 -0.07 -22.75 16 8 C -0.26 -6.31 12.51 30.01 0.38 -5.94 16 9 C -0.02 -0.37 13.47 31.12 0.42 0.05 16 10 C -0.08 -0.72 6.22 -12.60 -0.08 -0.80 16 11 C -0.15 -1.06 10.21 30.59 0.31 -0.75 16 12 C -0.16 -1.11 10.21 30.59 0.31 -0.80 16 13 C 0.10 2.33 6.44 86.53 0.56 2.89 16 14 C -0.09 -1.57 2.95 -9.89 -0.03 -1.60 16 15 H 0.11 1.90 7.71 -2.39 -0.02 1.88 16 16 C 0.07 1.54 4.88 86.30 0.42 1.96 16 17 N -0.68 -21.37 6.13 -517.92 -3.17 -24.55 16 18 C 0.06 2.02 6.17 85.56 0.53 2.55 16 19 C 0.45 21.35 7.82 87.66 0.69 22.04 16 20 O -0.61 -35.63 15.78 -3.05 -0.05 -35.68 16 21 N -0.59 -29.18 5.09 -306.99 -1.56 -30.75 16 22 C -0.33 -20.07 10.16 84.04 0.85 -19.21 16 23 H 0.05 3.95 7.39 -2.91 -0.02 3.93 16 24 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 25 N -0.93 -57.57 13.96 21.66 0.30 -57.26 16 26 Si 0.97 40.03 27.74 68.60 1.90 41.93 16 27 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.24 -8.36 6.52 99.48 0.65 -7.71 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.47 8.12 -2.38 -0.02 0.45 16 33 H 0.10 0.93 7.85 -2.39 -0.02 0.91 16 34 H 0.09 0.99 7.45 -2.39 -0.02 0.97 16 35 H 0.17 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 1.65 6.27 -2.39 -0.01 1.64 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.02 0.50 8.13 -2.39 -0.02 0.48 16 43 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.34 12.00 6.90 -89.69 -0.62 11.38 16 45 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.39 16.00 5.76 -92.70 -0.53 15.46 16 48 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -88.64 404.23 1.07 -87.57 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.22 Total: 37.83 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 6.66 Total: 19.95 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -7.14 Total: -128.85 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -0.12 Total: -58.43 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.90 Total: 41.93 kcal Total: -88.64 1.07 -87.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106101130.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.866 kcal (2) G-P(sol) polarization free energy of solvation -88.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds