Wall clock time and date at job start Tue Mar 31 2020 17:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 110.65723 * 2 1 4 4 C 1.54599 * 110.99206 * 236.84604 * 2 1 3 5 5 N 1.48110 * 103.42361 * 204.37238 * 4 2 1 6 6 C 1.34784 * 127.03378 * 219.28474 * 5 4 2 7 7 O 1.21274 * 119.99897 * 179.41328 * 6 5 4 8 8 C 1.50695 * 119.99635 * 359.68369 * 6 5 4 9 9 C 1.53002 * 109.47004 * 179.97438 * 8 6 5 10 10 N 1.46499 * 109.47341 * 180.02562 * 9 8 6 11 11 C 1.35760 * 119.62713 * 90.00169 * 10 9 8 12 12 C 1.35344 * 120.70314 * 179.97438 * 11 10 9 13 13 C 1.40190 * 119.95115 * 0.02562 * 12 11 10 14 14 C 1.36398 * 119.26332 * 359.97438 * 13 12 11 15 15 C 1.34658 * 119.62398 * 269.72987 * 10 9 8 16 16 O 1.22065 * 119.98740 * 359.97438 * 15 10 9 17 17 C 1.47489 * 105.93472 * 39.02405 * 5 4 2 18 18 C 1.54006 * 107.08121 * 334.77878 * 17 5 4 19 19 H 1.08997 * 110.32643 * 120.19510 * 18 17 5 20 20 C 1.52996 * 110.32427 * 242.31278 * 18 17 5 21 21 N 1.46503 * 109.47419 * 293.54523 * 20 18 17 22 22 C 1.36933 * 120.00670 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99626 * 359.97438 * 22 21 20 24 24 C 1.38807 * 120.00146 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00479 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99848 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47177 * 89.99630 * 26 24 22 28 28 H 1.48494 * 109.47099 * 209.99483 * 26 24 22 29 29 H 1.48499 * 109.47089 * 329.99824 * 26 24 22 30 30 H 1.09003 * 109.47583 * 296.80637 * 1 2 3 31 31 H 1.09000 * 109.47276 * 56.81044 * 1 2 3 32 32 H 1.09004 * 109.47177 * 176.80570 * 1 2 3 33 33 H 1.09003 * 110.61523 * 85.85597 * 4 2 1 34 34 H 1.08999 * 110.54198 * 322.85422 * 4 2 1 35 35 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 36 36 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 37 37 H 1.08997 * 109.47244 * 300.00535 * 9 8 6 38 38 H 1.09002 * 109.46787 * 59.99910 * 9 8 6 39 39 H 1.08001 * 119.64392 * 0.02562 * 11 10 9 40 40 H 1.08005 * 120.02489 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.36915 * 179.97438 * 13 12 11 42 42 H 1.08007 * 120.34700 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.91249 * 94.13962 * 17 5 4 44 44 H 1.08999 * 109.90958 * 215.22507 * 17 5 4 45 45 H 1.09001 * 109.47981 * 53.54544 * 20 18 17 46 46 H 1.08999 * 109.47560 * 173.54625 * 20 18 17 47 47 H 0.97002 * 119.99501 * 0.02562 * 21 20 18 48 48 H 0.96996 * 120.00507 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0837 -0.7894 -1.2084 5 7 3.4321 -1.2056 -0.7585 6 6 4.5593 -1.2404 -1.4965 7 8 5.6036 -1.5951 -0.9922 8 6 4.5232 -0.8327 -2.9468 9 6 5.9241 -0.9624 -3.5481 10 7 5.8892 -0.5655 -4.9579 11 6 6.1086 0.7310 -5.2957 12 6 6.0819 1.1215 -6.5913 13 6 5.8250 0.1827 -7.6002 14 6 5.6048 -1.1194 -7.2589 15 6 5.6452 -1.4917 -5.9043 16 8 5.4552 -2.6546 -5.5853 17 6 3.2903 -1.5680 0.6641 18 6 2.0774 -0.7916 1.2101 19 1 1.3220 -1.4830 1.5833 20 6 2.5153 0.1659 2.3201 21 7 2.9825 -0.6057 3.4745 22 6 3.4267 0.0415 4.5965 23 1 3.4329 1.1210 4.6303 24 6 3.8699 -0.6896 5.6900 25 7 3.8627 -2.0051 5.6487 26 14 4.4764 0.1935 7.2203 27 1 3.3374 0.4183 8.1463 28 1 5.5065 -0.6363 7.8950 29 1 5.0673 1.5005 6.8360 30 1 -0.3634 0.4635 0.9172 31 1 -0.3634 0.5625 -0.8600 32 1 -0.3634 -1.0261 -0.0573 33 1 2.1524 -0.1479 -2.0870 34 1 1.4612 -1.6601 -1.4143 35 1 3.8333 -1.4794 -3.4890 36 1 4.1890 0.2019 -3.0252 37 1 6.6136 -0.3154 -3.0058 38 1 6.2587 -1.9968 -3.4697 39 1 6.3074 1.4582 -4.5224 40 1 6.2576 2.1559 -6.8477 41 1 5.8017 0.4870 -8.6362 42 1 5.4056 -1.8574 -8.0220 43 1 3.1179 -2.6402 0.7587 44 1 4.1909 -1.2874 1.2102 45 1 3.3237 0.7997 1.9556 46 1 1.6713 0.7885 2.6169 47 1 2.9773 -1.5753 3.4440 48 1 4.1721 -2.5161 6.4130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106207261.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:03 Heat of formation + Delta-G solvation = -24.648971 kcal Electronic energy + Delta-G solvation = -28267.562224 eV Core-core repulsion = 24323.184204 eV Total energy + Delta-G solvation = -3944.378021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68420 -40.11155 -38.07269 -37.18766 -35.36485 -34.66080 -32.92170 -31.63550 -31.29490 -30.15698 -29.03766 -26.59040 -26.09040 -24.84140 -23.98943 -23.23296 -22.36800 -21.17516 -19.86165 -19.24220 -18.09623 -17.65368 -17.19890 -16.86131 -16.39492 -16.33320 -15.97096 -15.44286 -14.95586 -14.74788 -14.56027 -14.44798 -14.17065 -13.64233 -13.40939 -13.29562 -13.07974 -12.86368 -12.76267 -12.64832 -12.51938 -12.32794 -12.11438 -11.94347 -11.81388 -11.52163 -11.45627 -11.10043 -10.88570 -10.65187 -10.54175 -10.51299 -10.33733 -10.22528 -9.99623 -9.84440 -9.66225 -8.88106 -8.61510 -8.33549 -6.92633 -5.75590 -3.04816 0.46241 1.52627 2.21966 2.60004 2.98914 3.33002 3.44306 3.49202 3.51384 4.16521 4.28772 4.35201 4.48436 4.48791 4.52608 4.60153 4.72776 4.79882 4.86615 4.90753 4.95240 5.05480 5.29788 5.33309 5.37121 5.44412 5.49172 5.53205 5.58900 5.61203 5.69351 5.72222 5.75522 5.89934 5.96534 6.05335 6.13007 6.15058 6.16633 6.24808 6.39891 6.44668 6.70038 6.74824 6.84133 7.56238 7.70124 7.73246 8.13485 8.42768 9.54021 10.10717 10.45167 11.47165 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.002240 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.246215 B =12494.212874 C =13145.853327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.084 0.916 4 C 0.102 3.898 5 N -0.618 5.618 6 C 0.535 3.465 7 O -0.536 6.536 8 C -0.149 4.149 9 C 0.104 3.896 10 N -0.495 5.495 11 C 0.136 3.864 12 C -0.237 4.237 13 C -0.017 4.017 14 C -0.246 4.246 15 C 0.510 3.490 16 O -0.548 6.548 17 C 0.111 3.889 18 C -0.103 4.103 19 H 0.087 0.913 20 C 0.163 3.837 21 N -0.732 5.732 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.163 0.837 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.019 0.981 46 H 0.022 0.978 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 8.267 -27.963 29.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.021 4.021 5 N -0.352 5.352 6 C 0.323 3.677 7 O -0.413 6.413 8 C -0.190 4.190 9 C -0.017 4.017 10 N -0.206 5.206 11 C 0.009 3.991 12 C -0.260 4.260 13 C -0.039 4.039 14 C -0.267 4.267 15 C 0.312 3.688 16 O -0.430 6.430 17 C -0.011 4.011 18 C -0.122 4.122 19 H 0.105 0.895 20 C 0.036 3.964 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.165 0.835 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.036 0.964 46 H 0.040 0.960 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.467 7.403 -27.376 28.397 hybrid contribution 0.228 0.278 0.842 0.915 sum -1.239 7.680 -26.535 27.652 Atomic orbital electron populations 1.21730 0.93777 1.02084 1.02150 1.22221 0.96093 0.99682 0.93955 0.89798 1.22599 0.83243 0.98665 0.97556 1.48810 1.08052 1.65840 1.12453 1.19805 0.82460 0.78142 0.87334 1.90765 1.29623 1.47863 1.73059 1.21894 0.99127 1.04079 0.93865 1.21758 0.97139 1.05431 0.77385 1.45644 1.56909 1.08293 1.09709 1.22059 0.93404 0.85367 0.98287 1.20668 1.12631 1.01405 0.91318 1.21451 0.89797 0.92584 1.00029 1.22150 1.11305 0.98083 0.95200 1.17233 0.79507 0.85454 0.86644 1.90998 1.51948 1.17304 1.82778 1.22200 1.00346 0.98880 0.79652 1.22389 0.96592 0.97993 0.95227 0.89484 1.20685 0.96104 0.92789 0.86852 1.42366 1.77192 1.05713 1.12407 1.19193 1.34792 0.91205 0.91986 0.91248 1.24745 1.02196 0.95478 0.98510 1.69650 1.53285 1.04139 1.30960 0.86189 0.78185 0.78441 0.83356 1.21739 1.21747 1.20795 0.91685 0.92696 0.92374 0.90588 0.90725 0.88158 0.88531 0.87930 0.87059 0.81979 0.83745 0.84861 0.83533 0.91707 0.89007 0.96360 0.96047 0.78235 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.17 37.15 0.34 -0.95 16 2 C -0.10 -1.11 3.18 -88.93 -0.28 -1.39 16 3 H 0.08 0.95 7.87 -51.92 -0.41 0.54 16 4 C 0.10 1.04 6.38 -2.32 -0.01 1.02 16 5 N -0.62 -8.54 3.29 -169.98 -0.56 -9.10 16 6 C 0.54 7.67 7.89 -10.98 -0.09 7.58 16 7 O -0.54 -9.95 16.32 5.56 0.09 -9.86 16 8 C -0.15 -1.48 4.96 -27.88 -0.14 -1.61 16 9 C 0.10 1.06 4.63 -4.04 -0.02 1.04 16 10 N -0.50 -4.45 2.58 -119.77 -0.31 -4.76 16 11 C 0.14 0.77 10.28 -16.85 -0.17 0.60 16 12 C -0.24 -1.12 10.01 -39.88 -0.40 -1.52 16 13 C -0.02 -0.09 10.10 -39.51 -0.40 -0.49 16 14 C -0.25 -2.10 9.99 -39.38 -0.39 -2.50 16 15 C 0.51 5.89 7.41 -15.45 -0.11 5.78 16 16 O -0.55 -8.67 16.64 4.86 0.08 -8.58 16 17 C 0.11 1.84 6.31 -2.98 -0.02 1.82 16 18 C -0.10 -1.56 2.64 -89.25 -0.24 -1.79 16 19 H 0.09 1.33 7.85 -51.93 -0.41 0.93 16 20 C 0.16 3.19 5.35 -4.04 -0.02 3.17 16 21 N -0.73 -18.43 5.33 -59.91 -0.32 -18.75 16 22 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 26 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 33 H 0.08 0.58 7.23 -51.93 -0.38 0.21 16 34 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 0.70 7.90 -51.93 -0.41 0.29 16 37 H 0.10 0.90 7.97 -51.93 -0.41 0.49 16 38 H 0.11 1.44 7.34 -51.93 -0.38 1.05 16 39 H 0.16 0.44 8.04 -52.49 -0.42 0.02 16 40 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 41 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.87 7.49 -51.93 -0.39 1.49 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.38 10.17 7.51 -40.82 -0.31 9.86 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -36.87 396.37 -9.25 -46.12 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.70 Total: 5.76 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -2.20 Total: 3.33 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.46 Total: -60.37 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.17 Total: -18.44 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.87 -9.25 -46.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106207261.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.468 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds