Wall clock time and date at job start Tue Mar 31 2020 17:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 110.65723 * 2 1 4 4 C 1.54599 * 110.99206 * 236.84604 * 2 1 3 5 5 N 1.48110 * 103.42361 * 204.37238 * 4 2 1 6 6 C 1.34784 * 127.03378 * 219.28474 * 5 4 2 7 7 O 1.21274 * 119.99897 * 179.41328 * 6 5 4 8 8 C 1.50695 * 119.99635 * 359.68369 * 6 5 4 9 9 C 1.53002 * 109.47004 * 179.97438 * 8 6 5 10 10 N 1.46499 * 109.47341 * 180.02562 * 9 8 6 11 11 C 1.35760 * 119.62713 * 90.00169 * 10 9 8 12 12 C 1.35344 * 120.70314 * 179.97438 * 11 10 9 13 13 C 1.40190 * 119.95115 * 0.02562 * 12 11 10 14 14 C 1.36398 * 119.26332 * 359.97438 * 13 12 11 15 15 C 1.34658 * 119.62398 * 269.72987 * 10 9 8 16 16 O 1.22065 * 119.98740 * 359.97438 * 15 10 9 17 17 C 1.47489 * 105.93472 * 39.02405 * 5 4 2 18 18 C 1.54006 * 107.08121 * 334.77878 * 17 5 4 19 19 H 1.08997 * 110.32643 * 120.19510 * 18 17 5 20 20 C 1.52996 * 110.32427 * 242.31278 * 18 17 5 21 21 N 1.46503 * 109.47419 * 293.54523 * 20 18 17 22 22 C 1.36933 * 120.00670 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99626 * 359.97438 * 22 21 20 24 24 C 1.38807 * 120.00146 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00479 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99848 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47177 * 89.99630 * 26 24 22 28 28 H 1.48494 * 109.47099 * 209.99483 * 26 24 22 29 29 H 1.48499 * 109.47089 * 329.99824 * 26 24 22 30 30 H 1.09003 * 109.47583 * 296.80637 * 1 2 3 31 31 H 1.09000 * 109.47276 * 56.81044 * 1 2 3 32 32 H 1.09004 * 109.47177 * 176.80570 * 1 2 3 33 33 H 1.09003 * 110.61523 * 85.85597 * 4 2 1 34 34 H 1.08999 * 110.54198 * 322.85422 * 4 2 1 35 35 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 36 36 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 37 37 H 1.08997 * 109.47244 * 300.00535 * 9 8 6 38 38 H 1.09002 * 109.46787 * 59.99910 * 9 8 6 39 39 H 1.08001 * 119.64392 * 0.02562 * 11 10 9 40 40 H 1.08005 * 120.02489 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.36915 * 179.97438 * 13 12 11 42 42 H 1.08007 * 120.34700 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.91249 * 94.13962 * 17 5 4 44 44 H 1.08999 * 109.90958 * 215.22507 * 17 5 4 45 45 H 1.09001 * 109.47981 * 53.54544 * 20 18 17 46 46 H 1.08999 * 109.47560 * 173.54625 * 20 18 17 47 47 H 0.97002 * 119.99501 * 0.02562 * 21 20 18 48 48 H 0.96996 * 120.00507 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0837 -0.7894 -1.2084 5 7 3.4321 -1.2056 -0.7585 6 6 4.5593 -1.2404 -1.4965 7 8 5.6036 -1.5951 -0.9922 8 6 4.5232 -0.8327 -2.9468 9 6 5.9241 -0.9624 -3.5481 10 7 5.8892 -0.5655 -4.9579 11 6 6.1086 0.7310 -5.2957 12 6 6.0819 1.1215 -6.5913 13 6 5.8250 0.1827 -7.6002 14 6 5.6048 -1.1194 -7.2589 15 6 5.6452 -1.4917 -5.9043 16 8 5.4552 -2.6546 -5.5853 17 6 3.2903 -1.5680 0.6641 18 6 2.0774 -0.7916 1.2101 19 1 1.3220 -1.4830 1.5833 20 6 2.5153 0.1659 2.3201 21 7 2.9825 -0.6057 3.4745 22 6 3.4267 0.0415 4.5965 23 1 3.4329 1.1210 4.6303 24 6 3.8699 -0.6896 5.6900 25 7 3.8627 -2.0051 5.6487 26 14 4.4764 0.1935 7.2203 27 1 3.3374 0.4183 8.1463 28 1 5.5065 -0.6363 7.8950 29 1 5.0673 1.5005 6.8360 30 1 -0.3634 0.4635 0.9172 31 1 -0.3634 0.5625 -0.8600 32 1 -0.3634 -1.0261 -0.0573 33 1 2.1524 -0.1479 -2.0870 34 1 1.4612 -1.6601 -1.4143 35 1 3.8333 -1.4794 -3.4890 36 1 4.1890 0.2019 -3.0252 37 1 6.6136 -0.3154 -3.0058 38 1 6.2587 -1.9968 -3.4697 39 1 6.3074 1.4582 -4.5224 40 1 6.2576 2.1559 -6.8477 41 1 5.8017 0.4870 -8.6362 42 1 5.4056 -1.8574 -8.0220 43 1 3.1179 -2.6402 0.7587 44 1 4.1909 -1.2874 1.2102 45 1 3.3237 0.7997 1.9556 46 1 1.6713 0.7885 2.6169 47 1 2.9773 -1.5753 3.4440 48 1 4.1721 -2.5161 6.4130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106207261.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:02 Heat of formation + Delta-G solvation = -49.809325 kcal Electronic energy + Delta-G solvation = -28268.653259 eV Core-core repulsion = 24323.184204 eV Total energy + Delta-G solvation = -3945.469055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.37638 -41.23955 -39.26810 -37.96900 -36.47237 -36.04434 -34.24848 -33.09372 -32.34255 -30.79480 -30.49472 -27.67978 -27.20916 -25.99802 -24.97068 -24.53135 -23.16333 -22.44489 -21.03238 -20.35875 -19.22798 -18.78669 -18.28937 -17.73153 -17.48383 -17.06442 -16.92156 -16.71469 -16.35537 -15.89925 -15.48791 -15.38130 -15.23941 -15.07012 -14.93152 -14.55417 -14.02526 -14.00574 -13.86077 -13.64068 -13.24953 -13.23342 -13.13705 -12.90659 -12.83121 -12.76016 -12.69117 -12.53826 -12.32008 -12.16877 -11.96145 -11.88359 -11.51019 -11.38904 -11.23401 -11.01409 -10.98624 -10.92558 -9.80406 -9.02805 -8.96039 -7.97278 -5.26519 -0.05348 0.94548 1.44598 1.46524 1.47185 1.48199 1.55400 1.99041 2.53816 2.70630 3.32658 3.37072 3.51509 3.59317 3.62805 3.73091 3.77728 3.90850 4.00019 4.17136 4.18943 4.22190 4.26005 4.35325 4.43697 4.48519 4.53820 4.54961 4.64841 4.65939 4.73652 4.76971 4.87836 4.91572 4.99850 5.08392 5.10373 5.20885 5.23249 5.25691 5.37123 5.43455 5.46243 5.55905 5.69144 6.12212 6.24621 6.47347 6.98234 7.02046 7.30732 8.06627 8.28888 9.26320 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.002240 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.246215 B =12494.212874 C =13145.853327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.089 0.911 4 C 0.103 3.897 5 N -0.618 5.618 6 C 0.527 3.473 7 O -0.590 6.590 8 C -0.130 4.130 9 C 0.108 3.892 10 N -0.492 5.492 11 C 0.127 3.873 12 C -0.225 4.225 13 C 0.008 3.992 14 C -0.281 4.281 15 C 0.491 3.509 16 O -0.615 6.615 17 C 0.115 3.885 18 C -0.093 4.093 19 H 0.086 0.914 20 C 0.164 3.836 21 N -0.746 5.746 22 C -0.245 4.245 23 H 0.076 0.924 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.975 3.025 27 H -0.283 1.283 28 H -0.297 1.297 29 H -0.269 1.269 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.198 0.802 40 H 0.183 0.817 41 H 0.168 0.832 42 H 0.143 0.857 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.011 0.989 46 H 0.031 0.969 47 H 0.373 0.627 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 12.289 -30.466 33.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.018 4.018 5 N -0.351 5.351 6 C 0.317 3.683 7 O -0.471 6.471 8 C -0.170 4.170 9 C -0.014 4.014 10 N -0.201 5.201 11 C 0.002 3.998 12 C -0.247 4.247 13 C -0.013 4.013 14 C -0.302 4.302 15 C 0.297 3.703 16 O -0.503 6.503 17 C -0.008 4.008 18 C -0.112 4.112 19 H 0.104 0.896 20 C 0.038 3.962 21 N -0.389 5.389 22 C -0.377 4.377 23 H 0.094 0.906 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.804 3.196 27 H -0.210 1.210 28 H -0.224 1.224 29 H -0.194 1.194 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.215 0.785 40 H 0.201 0.799 41 H 0.185 0.815 42 H 0.161 0.839 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.029 0.971 46 H 0.049 0.951 47 H 0.205 0.795 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.719 11.523 -29.935 32.191 hybrid contribution 0.636 -0.842 1.532 1.860 sum -2.083 10.681 -28.403 30.417 Atomic orbital electron populations 1.21712 0.91763 1.02829 1.02981 1.22212 0.97576 0.99221 0.91787 0.89288 1.22889 0.80900 0.99779 0.98277 1.48927 1.09701 1.65322 1.11140 1.20657 0.81663 0.77049 0.88907 1.90739 1.31726 1.50192 1.74441 1.21806 0.99053 1.06197 0.89955 1.21580 0.97659 1.03659 0.78525 1.45554 1.56516 1.09434 1.08551 1.22773 0.92838 0.84135 1.00101 1.21205 1.10185 1.02878 0.90436 1.21894 0.86186 0.91107 1.02153 1.22105 1.14607 0.99853 0.93669 1.17743 0.79507 0.85051 0.88037 1.90950 1.55780 1.19847 1.83696 1.21914 0.98878 0.98533 0.81506 1.22266 0.95843 0.97532 0.95606 0.89563 1.20827 0.95723 0.93256 0.86392 1.42608 1.77291 1.05559 1.13434 1.19626 1.33567 0.91690 0.92818 0.90589 1.25614 1.03342 0.96248 1.01841 1.69819 1.54973 1.05675 1.31632 0.85118 0.77474 0.77555 0.79489 1.20996 1.22400 1.19420 0.92680 0.89784 0.91997 0.86655 0.89362 0.88029 0.84424 0.86528 0.91026 0.78482 0.79936 0.81455 0.83899 0.92741 0.93711 0.97118 0.95070 0.79549 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.17 71.98 0.66 -1.37 16 2 C -0.09 -1.73 3.18 -9.70 -0.03 -1.76 16 3 H 0.09 1.71 7.87 -2.38 -0.02 1.69 16 4 C 0.10 1.76 6.38 86.61 0.55 2.32 16 5 N -0.62 -16.85 3.29 -810.08 -2.67 -19.52 16 6 C 0.53 15.26 7.89 87.65 0.69 15.95 16 7 O -0.59 -23.25 16.32 -3.01 -0.05 -23.30 16 8 C -0.13 -2.39 4.96 29.85 0.15 -2.24 16 9 C 0.11 2.19 4.63 86.38 0.40 2.59 16 10 N -0.49 -8.26 2.58 -650.98 -1.68 -9.95 16 11 C 0.13 0.95 10.28 83.42 0.86 1.81 16 12 C -0.23 -1.03 10.01 22.08 0.22 -0.81 16 13 C 0.01 0.06 10.10 22.31 0.23 0.29 16 14 C -0.28 -4.63 9.99 22.40 0.22 -4.41 16 15 C 0.49 11.64 7.41 84.82 0.63 12.27 16 16 O -0.61 -21.11 16.64 -5.53 -0.09 -21.20 16 17 C 0.12 3.99 6.31 86.53 0.55 4.53 16 18 C -0.09 -2.81 2.64 -9.90 -0.03 -2.84 16 19 H 0.09 2.64 7.85 -2.39 -0.02 2.62 16 20 C 0.16 6.47 5.35 86.38 0.46 6.93 16 21 N -0.75 -38.70 5.33 -343.46 -1.83 -40.53 16 22 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 23 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 24 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 25 N -0.97 -61.22 13.06 21.65 0.28 -60.94 16 26 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 27 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 28 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 29 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.90 8.11 -2.39 -0.02 0.89 16 33 H 0.12 1.15 7.23 -2.39 -0.02 1.14 16 34 H 0.09 1.35 8.02 -2.39 -0.02 1.33 16 35 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.14 1.40 7.90 -2.39 -0.02 1.38 16 37 H 0.12 1.97 7.97 -2.39 -0.02 1.96 16 38 H 0.07 2.05 7.34 -2.39 -0.02 2.03 16 39 H 0.20 0.04 8.04 -2.91 -0.02 0.02 16 40 H 0.18 -0.44 8.06 -2.91 -0.02 -0.47 16 41 H 0.17 0.14 8.06 -2.91 -0.02 0.12 16 42 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.97 7.49 -2.39 -0.02 1.95 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.37 20.71 7.51 -92.71 -0.70 20.01 16 48 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -88.63 396.37 3.11 -85.52 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.25 Total: 24.75 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.87 Total: 15.93 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -5.90 Total: -130.94 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.14 Total: -44.50 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -88.63 3.11 -85.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106207261.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.715 kcal (2) G-P(sol) polarization free energy of solvation -88.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds