Wall clock time and date at job start Tue Mar 31 2020 17:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35913 * 116.99826 * 2 1 4 4 C 1.39136 * 120.47526 * 180.24861 * 3 2 1 5 5 C 1.38529 * 118.37790 * 180.26261 * 4 3 2 6 6 C 1.38260 * 119.22068 * 359.75881 * 5 4 3 7 7 C 1.50700 * 119.55643 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47231 * 124.97586 * 7 6 5 9 9 O 1.21287 * 119.99957 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00538 * 179.97438 * 8 7 6 11 11 C 1.47486 * 127.04103 * 179.97438 * 10 8 7 12 12 C 1.54005 * 107.08650 * 154.51381 * 11 10 8 13 13 H 1.08998 * 110.32357 * 120.19896 * 12 11 10 14 14 C 1.52997 * 110.32330 * 242.31305 * 12 11 10 15 15 N 1.46502 * 109.47547 * 293.54303 * 14 12 11 16 16 C 1.36931 * 120.00142 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99875 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00169 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00064 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47262 * 89.99799 * 20 18 16 22 22 H 1.48498 * 109.47404 * 209.99883 * 20 18 16 23 23 H 1.48507 * 109.47286 * 330.00284 * 20 18 16 24 24 C 1.54621 * 105.04400 * 1.30760 * 12 11 10 25 25 H 1.09002 * 110.73992 * 263.51416 * 24 12 11 26 26 C 1.52995 * 110.73739 * 140.36927 * 24 12 11 27 27 C 1.48122 * 127.02974 * 359.67960 * 10 8 7 28 28 N 1.31848 * 120.88276 * 359.96906 * 6 5 4 29 29 C 1.31842 * 121.78210 * 0.02739 * 28 6 5 30 30 H 1.09000 * 109.46608 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47433 * 299.99746 * 1 2 3 32 32 H 1.08996 * 109.46953 * 60.00149 * 1 2 3 33 33 H 1.08004 * 120.81191 * 0.02562 * 4 3 2 34 34 H 1.07998 * 120.39551 * 179.77298 * 5 4 3 35 35 H 1.08999 * 109.46562 * 244.97122 * 7 6 5 36 36 H 1.08997 * 109.47508 * 4.97296 * 7 6 5 37 37 H 1.08992 * 109.91054 * 273.87901 * 11 10 8 38 38 H 1.09008 * 109.90651 * 35.15197 * 11 10 8 39 39 H 1.08999 * 109.47350 * 53.55241 * 14 12 11 40 40 H 1.09008 * 109.46806 * 173.54883 * 14 12 11 41 41 H 0.97003 * 119.99199 * 0.02562 * 15 14 12 42 42 H 0.96996 * 119.99664 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.47234 * 59.99987 * 26 24 12 44 44 H 1.09004 * 109.46913 * 179.97438 * 26 24 12 45 45 H 1.08996 * 109.47062 * 299.99632 * 26 24 12 46 46 H 1.09004 * 110.66454 * 337.77229 * 27 10 8 47 47 H 1.08996 * 110.66069 * 100.89122 * 27 10 8 48 48 H 1.08002 * 119.65465 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2954 -0.0052 5 6 4.0181 2.5519 0.0006 6 6 3.2078 3.6722 0.0062 7 6 3.8344 5.0427 0.0131 8 6 3.3025 5.8441 -1.1471 9 8 2.4946 5.3506 -1.9052 10 7 3.7246 7.1090 -1.3423 11 6 3.3105 8.0275 -2.4194 12 6 3.5140 9.4611 -1.8947 13 1 4.2165 10.0006 -2.5299 14 6 2.1758 10.2004 -1.8361 15 7 1.6663 10.3967 -3.1956 16 6 0.4741 11.0405 -3.3937 17 1 -0.0904 11.4040 -2.5478 18 6 -0.0088 11.2261 -4.6818 19 7 -1.1545 11.8454 -4.8723 20 14 0.9673 10.5968 -6.1449 21 1 0.5513 9.2055 -6.4560 22 1 0.7104 11.4651 -7.3218 23 1 2.4162 10.6192 -5.8200 24 6 4.0978 9.2891 -0.4733 25 1 3.3105 9.3531 0.2778 26 6 5.1857 10.3308 -0.2049 27 6 4.6947 7.8633 -0.5153 28 7 1.8944 3.5574 0.0055 29 6 1.3002 2.3805 0.0000 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0433 0.4031 -0.0097 34 1 5.0931 2.6553 0.0005 35 1 3.5899 5.5491 0.9469 36 1 4.9165 4.9481 -0.0764 37 1 3.9269 7.8647 -3.3034 38 1 2.2599 7.8662 -2.6613 39 1 1.4605 9.6121 -1.2614 40 1 2.3168 11.1696 -1.3576 41 1 2.1736 10.0705 -3.9554 42 1 -1.4917 11.9753 -5.7725 43 1 4.7608 11.3308 -0.2922 44 1 5.5820 10.1914 0.8009 45 1 5.9892 10.2127 -0.9319 46 1 4.7539 7.4423 0.4884 47 1 5.6768 7.8734 -0.9878 48 1 0.2215 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106581560.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:07 Heat of formation + Delta-G solvation = -17.359419 kcal Electronic energy + Delta-G solvation = -28270.119440 eV Core-core repulsion = 24326.057518 eV Total energy + Delta-G solvation = -3944.061922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00229 -40.01107 -38.62056 -37.64971 -34.77401 -32.97728 -32.65977 -32.49291 -31.51148 -29.65387 -28.42541 -27.50122 -26.34844 -25.47844 -23.69350 -23.02911 -22.32592 -21.03219 -19.97152 -19.23931 -18.45276 -17.68094 -17.42088 -16.81480 -16.41134 -16.15822 -15.87408 -15.35464 -14.79038 -14.57376 -14.50356 -14.21979 -14.13146 -13.85272 -13.63323 -13.27244 -13.11797 -12.89141 -12.84985 -12.55742 -12.44374 -12.23099 -12.19717 -12.02636 -11.87915 -11.63975 -11.51648 -11.40425 -10.93550 -10.65288 -10.52171 -10.26740 -10.05858 -9.98820 -9.75440 -9.54536 -9.51599 -8.85990 -8.61564 -8.55831 -7.19363 -5.72516 -3.07980 0.84813 1.05725 2.75280 2.83151 2.97373 3.41093 3.45268 3.49652 3.58109 4.05507 4.36795 4.37933 4.46307 4.49793 4.62978 4.63901 4.75402 4.79684 4.82914 4.94369 5.01796 5.13207 5.15821 5.19099 5.26597 5.29316 5.37409 5.39201 5.45826 5.57573 5.65936 5.66875 5.69019 5.79493 5.85382 5.91476 6.06463 6.12625 6.17574 6.21653 6.33721 6.41250 6.66024 6.80585 6.87148 7.63132 7.82706 8.03238 8.30201 8.46387 9.25238 9.97664 10.17022 11.46029 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.002715 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.378697 B =10311.317045 C =12010.563486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.071 3.929 4 C -0.110 4.110 5 C -0.126 4.126 6 C 0.106 3.894 7 C -0.081 4.081 8 C 0.534 3.466 9 O -0.519 6.519 10 N -0.623 5.623 11 C 0.109 3.891 12 C -0.107 4.107 13 H 0.085 0.915 14 C 0.167 3.833 15 N -0.756 5.756 16 C -0.243 4.243 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.935 5.935 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.100 4.100 25 H 0.086 0.914 26 C -0.140 4.140 27 C 0.103 3.897 28 N -0.418 5.418 29 C 0.028 3.972 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.030 0.970 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.724 -20.274 15.535 29.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.024 3.976 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.033 4.033 7 C -0.122 4.122 8 C 0.321 3.679 9 O -0.393 6.393 10 N -0.358 5.358 11 C -0.013 4.013 12 C -0.127 4.127 13 H 0.103 0.897 14 C 0.040 3.960 15 N -0.402 5.402 16 C -0.373 4.373 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.583 5.583 20 Si 0.713 3.287 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.119 4.119 25 H 0.105 0.895 26 C -0.197 4.197 27 C -0.020 4.020 28 N -0.127 5.127 29 C -0.131 4.131 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 14.580 -20.001 15.173 29.031 hybrid contribution 0.811 -0.968 -1.219 1.755 sum 15.391 -20.969 13.954 29.517 Atomic orbital electron populations 1.23140 0.77827 1.04337 1.01892 1.86054 1.21811 1.26106 1.88633 1.20108 0.93314 0.85787 0.98389 1.20838 0.91661 0.98679 1.02413 1.21766 1.01169 0.91642 1.00016 1.20457 0.89347 0.94217 0.99290 1.20492 1.00835 0.91651 0.99179 1.19865 0.81563 0.80215 0.86221 1.90769 1.32677 1.69156 1.46733 1.48800 1.44302 1.12391 1.30337 1.22160 1.02349 0.87589 0.89199 1.22440 0.99275 0.95043 0.95910 0.89661 1.20676 0.90726 0.96543 0.88070 1.42719 1.24575 1.70978 1.01884 1.19042 0.95447 1.28743 0.94019 0.89242 1.24664 0.96938 1.00544 0.96983 1.69703 1.20270 1.47373 1.20944 0.86565 0.79805 0.78718 0.83575 1.20961 1.21737 1.20337 1.22224 0.98354 0.93736 0.97633 0.89548 1.21732 0.97811 0.98994 1.01209 1.22585 0.92453 0.91598 0.95378 1.67313 1.11410 1.26334 1.07598 1.22916 1.00614 0.86868 1.02724 0.87899 0.92294 0.92157 0.84002 0.84057 0.87216 0.87545 0.92158 0.89253 0.95369 0.95217 0.80696 0.93092 0.91701 0.92575 0.92494 0.90349 0.90900 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.02 10.51 -19.47 -0.20 -3.23 16 3 C 0.07 0.77 6.71 -39.08 -0.26 0.51 16 4 C -0.11 -1.04 10.13 -39.14 -0.40 -1.44 16 5 C -0.13 -1.17 9.70 -39.47 -0.38 -1.55 16 6 C 0.11 1.27 5.76 -82.58 -0.48 0.80 16 7 C -0.08 -0.82 5.03 -29.03 -0.15 -0.97 16 8 C 0.53 7.96 7.82 -10.99 -0.09 7.87 16 9 O -0.52 -10.35 15.67 5.55 0.09 -10.26 16 10 N -0.62 -8.45 3.29 -169.95 -0.56 -9.01 16 11 C 0.11 1.75 6.31 -2.98 -0.02 1.73 16 12 C -0.11 -1.57 2.64 -89.24 -0.24 -1.81 16 13 H 0.09 1.21 7.85 -51.93 -0.41 0.81 16 14 C 0.17 3.23 5.35 -4.04 -0.02 3.21 16 15 N -0.76 -18.33 5.13 -59.91 -0.31 -18.64 16 16 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 17 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 19 N -0.93 -30.12 13.97 55.49 0.78 -29.35 16 20 Si 0.88 22.82 27.74 -169.99 -4.71 18.10 16 21 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 23 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 24 C -0.10 -1.08 3.19 -88.91 -0.28 -1.36 16 25 H 0.09 0.98 7.87 -51.93 -0.41 0.58 16 26 C -0.14 -1.22 9.17 37.16 0.34 -0.88 16 27 C 0.10 0.96 6.39 -2.29 -0.01 0.95 16 28 N -0.42 -6.04 9.22 -9.35 -0.09 -6.13 16 29 C 0.03 0.34 10.22 -17.38 -0.18 0.16 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.31 7.68 -51.93 -0.40 -0.09 16 32 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 33 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.14 0.82 7.94 -52.49 -0.42 0.40 16 35 H 0.11 0.93 7.90 -51.93 -0.41 0.52 16 36 H 0.11 0.68 7.87 -51.93 -0.41 0.28 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.79 7.48 -51.92 -0.39 1.40 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.36 8.54 5.37 -40.82 -0.22 8.32 16 42 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 46 H 0.08 0.53 7.23 -51.93 -0.38 0.15 16 47 H 0.07 0.58 8.02 -51.93 -0.42 0.16 16 48 H 0.16 1.59 6.32 -52.49 -0.33 1.26 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -38.46 391.08 -8.09 -46.55 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.55 Total: 4.90 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.42 Total: 1.17 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.18 Total: -63.13 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.12 Total: -13.49 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.10 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.46 -8.09 -46.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106581560.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.189 kcal (2) G-P(sol) polarization free energy of solvation -38.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds