Wall clock time and date at job start Tue Mar 31 2020 17:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 O 1.42901 * 109.46580 * 119.99631 * 2 1 3 5 5 C 1.35914 * 117.00011 * 275.10630 * 4 2 1 6 6 C 1.39133 * 120.47535 * 5.49774 * 5 4 2 7 7 C 1.38539 * 118.37839 * 179.97438 * 6 5 4 8 8 C 1.38254 * 119.21841 * 0.28324 * 7 6 5 9 9 N 1.31854 * 120.88463 * 359.42026 * 8 7 6 10 10 C 1.31834 * 121.77957 * 0.59398 * 9 8 7 11 11 C 1.50696 * 109.47545 * 239.99855 * 2 1 3 12 12 O 1.21287 * 119.99684 * 245.00344 * 11 2 1 13 13 N 1.34776 * 120.00086 * 65.00108 * 11 2 1 14 14 C 1.48115 * 127.03333 * 179.71008 * 13 11 2 15 15 C 1.54596 * 103.42204 * 219.28175 * 14 13 11 16 16 H 1.09001 * 110.57155 * 81.17047 * 15 14 13 17 17 C 1.52998 * 110.98967 * 204.37349 * 15 14 13 18 18 N 1.46508 * 109.46843 * 288.65566 * 17 15 14 19 19 C 1.36941 * 119.99709 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99742 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99916 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00040 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99908 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47314 * 60.00411 * 23 21 19 25 25 H 1.48509 * 109.46814 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46822 * 299.99699 * 23 21 19 27 27 C 1.54614 * 102.91208 * 322.86880 * 15 14 13 28 28 H 1.08996 * 110.32779 * 262.79960 * 27 15 14 29 29 C 1.53008 * 110.41113 * 140.63443 * 27 15 14 30 30 C 1.47486 * 127.03221 * 0.02562 * 13 11 2 31 31 H 1.09006 * 109.47242 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47562 * 300.00284 * 1 2 3 33 33 H 1.09007 * 109.47344 * 60.00422 * 1 2 3 34 34 H 1.08002 * 120.81470 * 0.02562 * 6 5 4 35 35 H 1.07997 * 120.39191 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.55393 * 179.71926 * 8 7 6 37 37 H 1.08003 * 119.65737 * 179.72552 * 10 9 8 38 38 H 1.08997 * 110.66399 * 337.77057 * 14 13 11 39 39 H 1.09008 * 110.66102 * 100.88385 * 14 13 11 40 40 H 1.08996 * 109.47356 * 48.64973 * 17 15 14 41 41 H 1.08999 * 109.47221 * 168.65700 * 17 15 14 42 42 H 0.96993 * 120.00489 * 359.97438 * 18 17 15 43 43 H 0.97004 * 120.00391 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.46623 * 302.87145 * 29 27 15 45 45 H 1.08991 * 109.47088 * 62.87336 * 29 27 15 46 46 H 1.08996 * 109.46748 * 182.87257 * 29 27 15 47 47 H 1.09002 * 109.91124 * 273.87740 * 30 13 11 48 48 H 1.08999 * 109.91437 * 35.15771 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.1102 0.0622 2.3048 6 6 1.6564 1.3770 2.3389 7 6 1.7833 2.0870 3.5218 8 6 2.3575 1.4727 4.6193 9 7 2.7724 0.2228 4.5552 10 6 2.6699 -0.4870 3.4490 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1213 13 7 1.7920 -0.1942 -2.4519 14 6 2.2150 -0.7545 -3.7562 15 6 2.6178 0.4963 -4.5705 16 1 3.6266 0.8155 -4.3084 17 6 2.5092 0.2304 -6.0732 18 7 3.5815 -0.6781 -6.4871 19 6 3.6861 -1.0618 -7.7975 20 1 2.9783 -0.6943 -8.5259 21 6 4.7023 -1.9220 -8.1898 22 7 5.5651 -2.3694 -7.3022 23 14 4.8454 -2.4448 -9.9775 24 1 5.0422 -1.2449 -10.8299 25 1 6.0047 -3.3596 -10.1343 26 1 3.6029 -3.1461 -10.3890 27 6 1.5771 1.5490 -4.1241 28 1 0.7602 1.6026 -4.8436 29 6 2.2380 2.9203 -3.9688 30 6 1.0596 1.0475 -2.7631 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 1.2152 1.8329 1.4648 35 1 1.4423 3.1098 3.5844 36 1 2.4633 2.0226 5.5427 37 1 3.0250 -1.5069 3.4336 38 1 3.0678 -1.4214 -3.6299 39 1 1.3870 -1.2745 -4.2381 40 1 1.5431 -0.2241 -6.2929 41 1 2.6001 1.1711 -6.6162 42 1 4.2173 -1.0078 -5.8331 43 1 6.2755 -2.9703 -7.5764 44 1 3.0598 2.8488 -3.2563 45 1 2.6217 3.2501 -4.9341 46 1 1.5033 3.6386 -3.6052 47 1 -0.0092 0.8425 -2.8251 48 1 1.2528 1.7952 -1.9940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106652926.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:22 Heat of formation + Delta-G solvation = -17.886154 kcal Electronic energy + Delta-G solvation = -28559.237700 eV Core-core repulsion = 24615.152937 eV Total energy + Delta-G solvation = -3944.084763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23230 -40.21786 -38.77236 -37.58470 -34.77559 -33.30824 -32.60474 -32.24082 -31.43225 -30.40271 -29.05759 -26.75466 -25.83704 -24.90162 -24.01686 -23.41508 -22.64650 -21.24236 -20.03601 -19.62034 -18.84757 -17.53497 -17.10897 -16.99910 -16.50719 -16.23980 -15.89147 -15.32461 -14.83573 -14.75058 -14.43688 -14.31685 -14.08622 -13.81757 -13.59648 -13.51539 -13.23305 -13.09908 -12.96982 -12.75176 -12.59006 -12.39142 -12.15025 -12.08112 -11.84801 -11.59487 -11.37164 -11.15392 -10.86563 -10.63597 -10.54287 -10.43596 -10.20897 -10.06665 -9.95128 -9.81201 -9.68574 -8.89837 -8.79157 -8.74120 -6.94871 -5.76654 -3.06667 0.75919 0.85665 2.19297 2.44035 3.17405 3.43425 3.43683 3.47880 3.49533 4.01529 4.16120 4.21344 4.35419 4.39829 4.42910 4.45758 4.54235 4.70528 4.71563 4.76748 4.84815 5.06901 5.10667 5.14939 5.26403 5.36325 5.41265 5.43357 5.55652 5.58161 5.65001 5.66062 5.67501 5.70360 5.87949 5.95058 6.01346 6.05451 6.10192 6.11610 6.34270 6.38157 6.65749 6.77927 6.82088 7.41425 7.60729 7.67862 8.01920 8.41262 9.52412 10.09001 10.43055 11.45774 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.002262 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.139903 B =12375.901913 C =13079.772158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.096 0.904 4 O -0.276 6.276 5 C 0.085 3.915 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.054 3.946 9 N -0.446 5.446 10 C 0.078 3.922 11 C 0.534 3.466 12 O -0.511 6.511 13 N -0.617 5.617 14 C 0.117 3.883 15 C -0.102 4.102 16 H 0.084 0.916 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.101 4.101 28 H 0.090 0.910 29 C -0.142 4.142 30 C 0.100 3.900 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.535 13.958 20.247 28.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.011 3.989 3 H 0.114 0.886 4 O -0.187 6.187 5 C 0.037 3.963 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.103 4.103 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.320 3.680 12 O -0.385 6.385 13 N -0.353 5.353 14 C -0.004 4.004 15 C -0.122 4.122 16 H 0.103 0.897 17 C 0.038 3.962 18 N -0.377 5.377 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.120 4.120 28 H 0.108 0.892 29 C -0.199 4.199 30 C -0.023 4.023 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.788 12.715 20.938 27.634 hybrid contribution -0.185 0.323 -1.672 1.713 sum -12.973 13.038 19.266 26.636 Atomic orbital electron populations 1.22395 0.92414 1.04855 1.03962 1.22186 0.95899 0.96834 0.84030 0.88618 1.86258 1.80655 1.36455 1.15354 1.20278 0.96491 0.91250 0.88321 1.21784 1.03672 0.94094 1.00163 1.22004 0.98897 1.01108 0.92988 1.22698 0.97349 0.91323 0.98890 1.67764 1.14842 1.07437 1.25489 1.22303 0.98586 1.01114 0.86099 1.19488 0.80412 0.85432 0.82644 1.90796 1.39422 1.22933 1.85394 1.48723 1.55679 1.25333 1.05524 1.22563 1.01136 0.96608 0.80131 1.22528 0.99084 0.93600 0.96970 0.89737 1.20617 0.92597 0.93806 0.89225 1.42367 1.32580 1.54800 1.07993 1.19145 1.10163 1.22556 0.85590 0.91227 1.24759 0.98066 1.00315 0.97722 1.69649 1.18337 1.37209 1.32726 0.86267 0.77076 0.78095 0.84713 1.21284 1.21680 1.21252 1.22101 0.98945 0.95541 0.95422 0.89191 1.21842 1.00234 0.95270 1.02602 1.22365 0.96118 0.86075 0.97732 0.90348 0.90773 0.89722 0.84173 0.84402 0.82469 0.81662 0.89088 0.90401 0.96066 0.95856 0.78194 0.93367 0.92667 0.91666 0.92719 0.91091 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.06 37.16 0.34 -1.00 16 2 C 0.07 0.73 2.01 -27.89 -0.06 0.67 16 3 H 0.10 0.77 5.90 -51.93 -0.31 0.46 16 4 O -0.28 -3.45 9.35 -39.33 -0.37 -3.82 16 5 C 0.08 0.89 6.62 -39.07 -0.26 0.63 16 6 C -0.17 -1.35 8.34 -39.14 -0.33 -1.67 16 7 C -0.13 -0.87 10.11 -39.46 -0.40 -1.27 16 8 C 0.05 0.43 11.18 -17.54 -0.20 0.24 16 9 N -0.45 -4.75 10.36 -13.12 -0.14 -4.89 16 10 C 0.08 0.84 11.14 -17.38 -0.19 0.65 16 11 C 0.53 7.72 7.27 -10.99 -0.08 7.64 16 12 O -0.51 -9.96 16.72 -14.31 -0.24 -10.20 16 13 N -0.62 -7.94 3.29 -169.98 -0.56 -8.50 16 14 C 0.12 1.82 6.44 -2.31 -0.01 1.80 16 15 C -0.10 -1.50 2.60 -88.93 -0.23 -1.73 16 16 H 0.08 1.36 7.86 -51.93 -0.41 0.96 16 17 C 0.17 3.07 5.59 -4.04 -0.02 3.05 16 18 N -0.73 -18.07 5.52 -59.91 -0.33 -18.40 16 19 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C -0.10 -1.03 3.17 -89.25 -0.28 -1.31 16 28 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 29 C -0.14 -1.27 8.90 37.16 0.33 -0.94 16 30 C 0.10 0.89 5.05 -2.98 -0.02 0.87 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.44 6.92 -51.93 -0.36 0.08 16 33 H 0.08 0.49 5.72 -51.93 -0.30 0.19 16 34 H 0.14 0.79 5.59 -52.49 -0.29 0.49 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.09 1.71 7.85 -51.93 -0.41 1.31 16 39 H 0.08 1.21 7.95 -51.92 -0.41 0.80 16 40 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.50 7.31 -51.93 -0.38 0.12 16 48 H 0.07 0.47 6.93 -51.93 -0.36 0.11 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -35.09 388.69 -9.02 -44.11 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.29 Total: 5.81 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.65 Total: 0.30 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.30 Total: -59.41 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.61 Total: -14.02 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.09 -9.02 -44.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106652926.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.225 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds