Wall clock time and date at job start Tue Mar 31 2020 17:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35678 * 116.99913 * 2 1 4 4 C 1.38922 * 119.67939 * 180.02562 * 3 2 1 5 5 C 1.38379 * 119.10869 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.75954 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47148 * 89.99833 * 6 5 4 8 8 O 1.21283 * 119.99803 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.28037 * 7 6 5 10 10 C 1.47487 * 127.03012 * 179.72722 * 9 7 6 11 11 C 1.54004 * 107.08487 * 154.51191 * 10 9 7 12 12 H 1.09003 * 110.32797 * 120.19357 * 11 10 9 13 13 C 1.52999 * 110.32819 * 242.31170 * 11 10 9 14 14 N 1.46501 * 109.47007 * 293.54397 * 13 11 10 15 15 C 1.36930 * 119.99876 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.00049 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00053 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99678 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47390 * 89.99958 * 19 17 15 21 21 H 1.48505 * 109.47062 * 209.99947 * 19 17 15 22 22 H 1.48502 * 109.47326 * 329.99844 * 19 17 15 23 23 C 1.54618 * 105.04349 * 1.30571 * 11 10 9 24 24 H 1.09001 * 110.74320 * 263.51266 * 23 11 10 25 25 C 1.52998 * 110.74212 * 140.36552 * 23 11 10 26 26 C 1.48113 * 127.03730 * 359.40408 * 9 7 6 27 27 C 1.38830 * 118.48650 * 0.27682 * 5 4 3 28 28 C 1.38047 * 119.28733 * 359.47561 * 27 5 4 29 29 N 1.31968 * 120.83421 * 0.53951 * 28 27 5 30 30 H 1.08994 * 109.47526 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46725 * 299.99678 * 1 2 3 32 32 H 1.09002 * 109.47621 * 59.98959 * 1 2 3 33 33 H 1.07994 * 120.44786 * 0.02595 * 4 3 2 34 34 H 1.09009 * 109.46601 * 329.99855 * 6 5 4 35 35 H 1.08998 * 109.47035 * 210.00362 * 6 5 4 36 36 H 1.08998 * 109.91504 * 273.87453 * 10 9 7 37 37 H 1.08996 * 109.91172 * 35.15201 * 10 9 7 38 38 H 1.08994 * 109.47201 * 53.54683 * 13 11 10 39 39 H 1.09003 * 109.46501 * 173.54719 * 13 11 10 40 40 H 0.96998 * 119.99977 * 359.97438 * 14 13 11 41 41 H 0.96999 * 120.00036 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.47184 * 59.99610 * 25 23 11 43 43 H 1.08996 * 109.47279 * 180.02562 * 25 23 11 44 44 H 1.09006 * 109.46989 * 300.00010 * 25 23 11 45 45 H 1.09004 * 110.66197 * 337.77835 * 26 9 7 46 46 H 1.09004 * 110.65874 * 100.88698 * 26 9 7 47 47 H 1.07994 * 120.35552 * 179.72393 * 27 5 4 48 48 H 1.08000 * 119.58257 * 180.25266 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5130 0.0000 6 6 5.5513 2.6269 -0.0011 7 6 6.0510 2.6660 -1.4223 8 8 5.2643 2.6077 -2.3436 9 7 7.3725 2.7605 -1.6695 10 6 8.0282 2.8048 -2.9899 11 6 9.3704 3.5370 -2.8042 12 1 10.1985 2.8874 -3.0879 13 6 9.3946 4.8213 -3.6353 14 7 9.3782 4.4813 -5.0602 15 6 9.3957 5.4756 -6.0015 16 1 9.4212 6.5104 -5.6936 17 6 9.3796 5.1535 -7.3517 18 7 9.3960 6.1092 -8.2565 19 14 9.3334 3.3636 -7.8843 20 1 7.9216 2.9229 -8.0168 21 1 10.0221 3.2183 -9.1920 22 1 10.0199 2.5267 -6.8677 23 6 9.4409 3.8692 -1.2958 24 1 9.1018 4.8881 -1.1086 25 6 10.8603 3.6662 -0.7620 26 6 8.4629 2.8479 -0.6710 27 6 3.2506 3.6491 0.0070 28 6 1.8772 3.5097 0.0021 29 7 1.3186 2.3140 0.0016 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 4.0228 0.3695 -0.0014 34 1 5.9811 1.7663 0.5117 35 1 5.8468 3.5413 0.5133 36 1 8.2049 1.7917 -3.3509 37 1 7.4028 3.3498 -3.6968 38 1 8.5197 5.4256 -3.3958 39 1 10.2992 5.3849 -3.4066 40 1 9.3557 3.5519 -5.3368 41 1 9.3843 5.8841 -9.2000 42 1 11.5474 4.3201 -1.2989 43 1 10.8864 3.9053 0.3011 44 1 11.1582 2.6278 -0.9079 45 1 8.0827 3.2143 0.2827 46 1 8.9486 1.8800 -0.5462 47 1 3.6994 4.6313 0.0121 48 1 1.2519 4.3903 0.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106667018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:28 Heat of formation + Delta-G solvation = -20.668695 kcal Electronic energy + Delta-G solvation = -28275.748622 eV Core-core repulsion = 24331.543199 eV Total energy + Delta-G solvation = -3944.205423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96176 -40.12318 -38.43794 -37.75633 -34.84600 -34.01126 -32.93871 -31.57897 -30.97204 -29.95183 -28.71088 -27.35530 -26.45209 -25.57668 -23.68415 -23.11526 -22.21505 -21.09664 -20.06318 -19.40586 -18.04556 -17.72339 -17.37472 -17.02649 -16.23500 -16.18539 -16.13289 -15.53475 -14.84345 -14.65095 -14.56857 -14.32038 -14.12695 -13.90250 -13.57238 -13.22930 -13.11740 -12.99250 -12.88070 -12.62454 -12.52732 -12.23340 -12.11338 -11.95096 -11.80360 -11.59274 -11.47022 -11.43075 -10.98575 -10.71282 -10.59408 -10.32520 -10.17364 -10.10254 -9.89167 -9.67914 -9.57913 -8.90196 -8.72012 -8.69625 -7.23739 -5.76058 -3.11951 0.93168 1.03203 2.55575 2.79593 2.92648 3.38269 3.42411 3.47283 3.57957 4.07543 4.25990 4.36021 4.41106 4.60273 4.60427 4.68605 4.84956 4.85838 4.89953 5.01258 5.05932 5.10995 5.15063 5.18642 5.24307 5.31073 5.37272 5.39413 5.50282 5.53367 5.59617 5.62854 5.66001 5.78467 5.84084 5.98998 6.04562 6.06284 6.09590 6.17117 6.24037 6.31926 6.60072 6.73044 7.00793 7.48200 7.63706 7.99064 8.10027 8.42645 9.21251 9.93659 10.12671 11.42342 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.002645 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.864613 B =10584.800541 C =11873.517797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.320 3.680 4 C -0.176 4.176 5 C 0.013 3.987 6 C -0.099 4.099 7 C 0.532 3.468 8 O -0.527 6.527 9 N -0.620 5.620 10 C 0.108 3.892 11 C -0.108 4.108 12 H 0.086 0.914 13 C 0.167 3.833 14 N -0.756 5.756 15 C -0.245 4.245 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.934 5.934 19 Si 0.883 3.117 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.099 4.099 24 H 0.086 0.914 25 C -0.140 4.140 26 C 0.102 3.898 27 C -0.194 4.194 28 C 0.140 3.860 29 N -0.542 5.542 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.137 0.863 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 -10.188 25.841 29.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.141 3.859 4 C -0.196 4.196 5 C 0.005 3.995 6 C -0.139 4.139 7 C 0.319 3.681 8 O -0.403 6.403 9 N -0.354 5.354 10 C -0.014 4.014 11 C -0.127 4.127 12 H 0.104 0.896 13 C 0.040 3.960 14 N -0.402 5.402 15 C -0.374 4.374 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.582 5.582 19 Si 0.713 3.287 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.119 4.119 24 H 0.105 0.895 25 C -0.198 4.198 26 C -0.021 4.021 27 C -0.214 4.214 28 C -0.015 4.015 29 N -0.266 5.266 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.193 0.807 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.155 0.845 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.138 -10.361 25.241 29.107 hybrid contribution 0.705 -1.021 -0.645 1.398 sum -9.433 -11.381 24.596 28.696 Atomic orbital electron populations 1.22843 0.77266 1.02844 1.02456 1.86229 1.22898 1.24622 1.87941 1.19722 0.89174 0.84707 0.92290 1.20828 0.92091 0.98835 1.07888 1.19440 0.94434 0.92437 0.93197 1.20671 0.91858 1.05773 0.95589 1.19915 0.80538 0.76871 0.90745 1.90791 1.54009 1.49153 1.46308 1.48798 1.04814 1.72813 1.09001 1.22205 0.93787 1.00481 0.84946 1.22452 0.96647 0.98916 0.94690 0.89555 1.20672 0.98764 0.92680 0.83881 1.42716 1.91144 1.05244 1.01053 1.19031 1.43100 0.89185 0.86129 0.89242 1.24670 1.01946 0.96822 0.95630 1.69698 1.57499 1.30628 1.00334 0.86568 0.77941 0.86291 0.77870 1.20937 1.21699 1.20344 1.22218 0.95479 0.99640 0.94571 0.89519 1.21735 0.95228 1.02169 1.00657 1.22618 0.87767 0.99585 0.92147 1.21852 0.94826 0.99311 1.05427 1.22339 0.92678 0.93601 0.92862 1.67283 1.41003 0.98875 1.19433 0.88709 0.92369 0.92260 0.84351 0.87425 0.87177 0.91937 0.89144 0.95430 0.95170 0.80680 0.93046 0.91628 0.92533 0.92458 0.90251 0.90727 0.84474 0.82216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.63 10.48 -18.74 -0.20 -3.82 16 3 C 0.32 4.01 7.49 -17.12 -0.13 3.88 16 4 C -0.18 -2.04 9.75 -39.28 -0.38 -2.43 16 5 C 0.01 0.14 4.41 -104.35 -0.46 -0.32 16 6 C -0.10 -0.87 4.81 -29.03 -0.14 -1.01 16 7 C 0.53 7.19 7.88 -10.98 -0.09 7.10 16 8 O -0.53 -9.79 16.37 5.55 0.09 -9.70 16 9 N -0.62 -7.75 3.29 -169.98 -0.56 -8.31 16 10 C 0.11 1.64 6.31 -2.98 -0.02 1.62 16 11 C -0.11 -1.50 2.64 -89.25 -0.24 -1.73 16 12 H 0.09 1.17 7.85 -51.93 -0.41 0.77 16 13 C 0.17 3.10 5.35 -4.04 -0.02 3.08 16 14 N -0.76 -17.86 5.13 -59.91 -0.31 -18.17 16 15 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -29.74 13.97 55.49 0.78 -28.96 16 19 Si 0.88 22.51 27.74 -169.99 -4.71 17.80 16 20 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 23 C -0.10 -0.99 3.18 -88.93 -0.28 -1.27 16 24 H 0.09 0.90 7.87 -51.93 -0.41 0.49 16 25 C -0.14 -1.14 9.17 37.16 0.34 -0.80 16 26 C 0.10 0.86 6.38 -2.32 -0.01 0.85 16 27 C -0.19 -1.99 9.81 -39.43 -0.39 -2.38 16 28 C 0.14 1.46 11.18 -17.56 -0.20 1.27 16 29 N -0.54 -6.64 9.22 -13.33 -0.12 -6.76 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.46 8.10 -51.92 -0.42 0.04 16 32 H 0.06 0.53 8.10 -51.93 -0.42 0.10 16 33 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 0.67 8.10 -51.92 -0.42 0.25 16 35 H 0.11 0.69 7.86 -51.93 -0.41 0.28 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.71 7.48 -51.93 -0.39 1.33 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.36 8.34 5.37 -40.82 -0.22 8.12 16 41 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.44 8.11 -51.93 -0.42 0.01 16 45 H 0.08 0.46 7.24 -51.93 -0.38 0.09 16 46 H 0.07 0.55 8.02 -51.93 -0.42 0.13 16 47 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -37.04 395.15 -8.00 -45.05 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.70 Total: 4.76 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.22 Total: 2.17 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -0.22 Total: -62.20 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.11 Total: -13.53 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.04 -8.00 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106667018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.379 kcal (2) G-P(sol) polarization free energy of solvation -37.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds