Wall clock time and date at job start Tue Mar 31 2020 17:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35678 * 116.99913 * 2 1 4 4 C 1.38922 * 119.67939 * 180.02562 * 3 2 1 5 5 C 1.38379 * 119.10869 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.75954 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47148 * 89.99833 * 6 5 4 8 8 O 1.21283 * 119.99803 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.28037 * 7 6 5 10 10 C 1.47487 * 127.03012 * 179.72722 * 9 7 6 11 11 C 1.54004 * 107.08487 * 154.51191 * 10 9 7 12 12 H 1.09003 * 110.32797 * 120.19357 * 11 10 9 13 13 C 1.52999 * 110.32819 * 242.31170 * 11 10 9 14 14 N 1.46501 * 109.47007 * 293.54397 * 13 11 10 15 15 C 1.36930 * 119.99876 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.00049 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00053 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99678 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47390 * 89.99958 * 19 17 15 21 21 H 1.48505 * 109.47062 * 209.99947 * 19 17 15 22 22 H 1.48502 * 109.47326 * 329.99844 * 19 17 15 23 23 C 1.54618 * 105.04349 * 1.30571 * 11 10 9 24 24 H 1.09001 * 110.74320 * 263.51266 * 23 11 10 25 25 C 1.52998 * 110.74212 * 140.36552 * 23 11 10 26 26 C 1.48113 * 127.03730 * 359.40408 * 9 7 6 27 27 C 1.38830 * 118.48650 * 0.27682 * 5 4 3 28 28 C 1.38047 * 119.28733 * 359.47561 * 27 5 4 29 29 N 1.31968 * 120.83421 * 0.53951 * 28 27 5 30 30 H 1.08994 * 109.47526 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46725 * 299.99678 * 1 2 3 32 32 H 1.09002 * 109.47621 * 59.98959 * 1 2 3 33 33 H 1.07994 * 120.44786 * 0.02595 * 4 3 2 34 34 H 1.09009 * 109.46601 * 329.99855 * 6 5 4 35 35 H 1.08998 * 109.47035 * 210.00362 * 6 5 4 36 36 H 1.08998 * 109.91504 * 273.87453 * 10 9 7 37 37 H 1.08996 * 109.91172 * 35.15201 * 10 9 7 38 38 H 1.08994 * 109.47201 * 53.54683 * 13 11 10 39 39 H 1.09003 * 109.46501 * 173.54719 * 13 11 10 40 40 H 0.96998 * 119.99977 * 359.97438 * 14 13 11 41 41 H 0.96999 * 120.00036 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.47184 * 59.99610 * 25 23 11 43 43 H 1.08996 * 109.47279 * 180.02562 * 25 23 11 44 44 H 1.09006 * 109.46989 * 300.00010 * 25 23 11 45 45 H 1.09004 * 110.66197 * 337.77835 * 26 9 7 46 46 H 1.09004 * 110.65874 * 100.88698 * 26 9 7 47 47 H 1.07994 * 120.35552 * 179.72393 * 27 5 4 48 48 H 1.08000 * 119.58257 * 180.25266 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5130 0.0000 6 6 5.5513 2.6269 -0.0011 7 6 6.0510 2.6660 -1.4223 8 8 5.2643 2.6077 -2.3436 9 7 7.3725 2.7605 -1.6695 10 6 8.0282 2.8048 -2.9899 11 6 9.3704 3.5370 -2.8042 12 1 10.1985 2.8874 -3.0879 13 6 9.3946 4.8213 -3.6353 14 7 9.3782 4.4813 -5.0602 15 6 9.3957 5.4756 -6.0015 16 1 9.4212 6.5104 -5.6936 17 6 9.3796 5.1535 -7.3517 18 7 9.3960 6.1092 -8.2565 19 14 9.3334 3.3636 -7.8843 20 1 7.9216 2.9229 -8.0168 21 1 10.0221 3.2183 -9.1920 22 1 10.0199 2.5267 -6.8677 23 6 9.4409 3.8692 -1.2958 24 1 9.1018 4.8881 -1.1086 25 6 10.8603 3.6662 -0.7620 26 6 8.4629 2.8479 -0.6710 27 6 3.2506 3.6491 0.0070 28 6 1.8772 3.5097 0.0021 29 7 1.3186 2.3140 0.0016 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 4.0228 0.3695 -0.0014 34 1 5.9811 1.7663 0.5117 35 1 5.8468 3.5413 0.5133 36 1 8.2049 1.7917 -3.3509 37 1 7.4028 3.3498 -3.6968 38 1 8.5197 5.4256 -3.3958 39 1 10.2992 5.3849 -3.4066 40 1 9.3557 3.5519 -5.3368 41 1 9.3843 5.8841 -9.2000 42 1 11.5474 4.3201 -1.2989 43 1 10.8864 3.9053 0.3011 44 1 11.1582 2.6278 -0.9079 45 1 8.0827 3.2143 0.2827 46 1 8.9486 1.8800 -0.5462 47 1 3.6994 4.6313 0.0121 48 1 1.2519 4.3903 0.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106667018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:27 Heat of formation + Delta-G solvation = -48.202472 kcal Electronic energy + Delta-G solvation = -28276.942576 eV Core-core repulsion = 24331.543199 eV Total energy + Delta-G solvation = -3945.399377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78920 -41.09076 -39.38363 -38.70011 -36.60643 -34.85926 -34.17406 -33.30463 -31.75583 -31.21405 -29.74627 -28.11394 -27.17676 -26.99995 -24.77966 -24.45182 -23.20374 -22.37726 -21.11472 -20.38219 -19.69175 -18.84705 -18.18032 -18.05878 -17.18062 -16.99480 -16.96492 -16.63692 -16.45658 -15.99526 -15.64301 -15.28875 -15.18977 -15.06819 -14.81506 -14.39152 -14.20757 -14.05654 -13.92959 -13.71270 -13.49788 -13.28060 -13.17683 -12.90795 -12.89083 -12.81545 -12.57832 -12.50032 -12.18617 -12.12723 -11.89117 -11.84619 -11.47711 -11.42417 -11.17422 -11.02627 -10.70956 -10.57685 -9.73253 -9.51458 -9.33555 -8.06720 -5.39894 0.13095 0.21497 1.32373 1.37955 1.43565 1.58498 1.92895 2.13094 2.44313 2.76457 3.24951 3.31810 3.37850 3.52144 3.56833 3.70576 3.86454 3.97506 4.03062 4.12237 4.15033 4.23436 4.39428 4.41746 4.45359 4.48715 4.52366 4.54307 4.61315 4.70000 4.72073 4.75413 4.78307 4.87282 4.91164 4.96474 5.02288 5.11332 5.23059 5.28073 5.28687 5.41763 5.44413 5.59215 5.71866 6.17409 6.21413 6.55284 6.82344 7.04145 7.11783 7.80366 7.98481 9.14928 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.002645 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.864613 B =10584.800541 C =11873.517797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.297 3.703 4 C -0.190 4.190 5 C 0.004 3.996 6 C -0.087 4.087 7 C 0.525 3.475 8 O -0.591 6.591 9 N -0.619 5.619 10 C 0.107 3.893 11 C -0.098 4.098 12 H 0.096 0.904 13 C 0.165 3.835 14 N -0.759 5.759 15 C -0.234 4.234 16 H 0.056 0.944 17 C -0.064 4.064 18 N -0.983 5.983 19 Si 0.951 3.049 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.245 1.245 23 C -0.092 4.092 24 H 0.082 0.918 25 C -0.136 4.136 26 C 0.103 3.897 27 C -0.199 4.199 28 C 0.128 3.872 29 N -0.559 5.559 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.012 0.988 39 H 0.034 0.966 40 H 0.365 0.635 41 H 0.258 0.742 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.120 0.880 46 H 0.098 0.902 47 H 0.158 0.842 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.660 -12.029 29.194 32.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.119 3.881 4 C -0.210 4.210 5 C -0.004 4.004 6 C -0.125 4.125 7 C 0.315 3.685 8 O -0.471 6.471 9 N -0.351 5.351 10 C -0.016 4.016 11 C -0.117 4.117 12 H 0.114 0.886 13 C 0.039 3.961 14 N -0.404 5.404 15 C -0.365 4.365 16 H 0.074 0.926 17 C -0.255 4.255 18 N -0.634 5.634 19 Si 0.778 3.222 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.170 1.170 23 C -0.112 4.112 24 H 0.101 0.899 25 C -0.193 4.193 26 C -0.018 4.018 27 C -0.219 4.219 28 C -0.026 4.026 29 N -0.284 5.284 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.052 0.948 40 H 0.198 0.802 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.138 0.862 46 H 0.116 0.884 47 H 0.175 0.825 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.974 -12.217 28.687 32.445 hybrid contribution 0.319 -0.318 -1.651 1.712 sum -8.655 -12.535 27.035 31.031 Atomic orbital electron populations 1.23025 0.75957 1.04549 1.02108 1.86203 1.24328 1.24622 1.88036 1.20035 0.89891 0.85047 0.93170 1.21082 0.92010 0.99784 1.08132 1.19759 0.95813 0.92194 0.92668 1.20745 0.90289 1.09030 0.92475 1.20799 0.80192 0.75386 0.92096 1.90767 1.55654 1.52090 1.48612 1.48904 1.05509 1.71905 1.08831 1.22007 0.93683 0.99991 0.85920 1.22350 0.96212 0.96219 0.96923 0.88558 1.20833 0.97935 0.95410 0.81913 1.42748 1.90851 1.04370 1.02453 1.19034 1.41221 0.88987 0.87292 0.92576 1.25506 1.02657 1.01632 0.95744 1.69876 1.59696 1.33205 1.00595 0.85461 0.77801 0.80960 0.77941 1.21346 1.21782 1.16971 1.22226 0.97526 1.00118 0.91329 0.89911 1.21713 0.93131 1.02536 1.01928 1.22940 0.86033 1.00441 0.92361 1.22186 0.94875 1.00250 1.04613 1.22862 0.93548 0.93881 0.92351 1.67300 1.41587 0.99432 1.20031 0.86005 0.92095 0.93185 0.83451 0.83994 0.83702 0.91619 0.93924 0.96992 0.94780 0.80196 0.93304 0.93089 0.89936 0.91440 0.86232 0.88361 0.82471 0.79761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.82 16 2 O -0.32 -7.62 10.48 -89.96 -0.94 -8.56 16 3 C 0.30 7.45 7.49 84.80 0.63 8.08 16 4 C -0.19 -4.25 9.75 22.47 0.22 -4.03 16 5 C 0.00 0.07 4.41 -19.69 -0.09 -0.01 16 6 C -0.09 -1.20 4.81 29.10 0.14 -1.06 16 7 C 0.52 13.19 7.88 87.66 0.69 13.88 16 8 O -0.59 -22.16 16.37 -3.04 -0.05 -22.21 16 9 N -0.62 -13.87 3.29 -810.08 -2.67 -16.54 16 10 C 0.11 3.16 6.31 86.53 0.55 3.70 16 11 C -0.10 -2.53 2.64 -9.90 -0.03 -2.56 16 12 H 0.10 2.35 7.85 -2.39 -0.02 2.33 16 13 C 0.17 6.11 5.35 86.38 0.46 6.57 16 14 N -0.76 -36.03 5.13 -343.45 -1.76 -37.79 16 15 C -0.23 -13.76 10.47 84.04 0.88 -12.88 16 16 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 17 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 18 N -0.98 -64.67 13.97 21.65 0.30 -64.37 16 19 Si 0.95 47.01 27.74 68.60 1.90 48.91 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 23 C -0.09 -1.50 3.18 -9.70 -0.03 -1.53 16 24 H 0.08 1.45 7.87 -2.39 -0.02 1.43 16 25 C -0.14 -1.61 9.17 71.98 0.66 -0.95 16 26 C 0.10 1.23 6.38 86.61 0.55 1.78 16 27 C -0.20 -3.77 9.81 22.37 0.22 -3.55 16 28 C 0.13 2.58 11.18 84.63 0.95 3.52 16 29 N -0.56 -13.64 9.22 -308.95 -2.85 -16.49 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 0.96 8.10 -2.38 -0.02 0.94 16 32 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.14 1.02 8.10 -2.38 -0.02 1.00 16 35 H 0.15 1.02 7.86 -2.39 -0.02 1.00 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.66 7.48 -2.39 -0.02 1.64 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.36 16.59 5.37 -92.71 -0.50 16.09 16 41 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 0.69 8.11 -2.38 -0.02 0.67 16 45 H 0.12 0.56 7.24 -2.38 -0.02 0.55 16 46 H 0.10 0.83 8.02 -2.39 -0.02 0.81 16 47 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 48 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -86.84 395.15 1.78 -85.06 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.39 Total: 22.60 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 7.45 Total: 9.37 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -6.98 Total: -135.19 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.99 Total: -30.77 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.90 Total: 48.91 kcal Total: -86.84 1.78 -85.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106667018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.857 kcal (2) G-P(sol) polarization free energy of solvation -86.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds