Wall clock time and date at job start Tue Mar 31 2020 17:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.28875 * 2 1 4 4 C 1.53999 * 110.32868 * 237.86920 * 2 1 3 5 5 N 1.47488 * 107.08462 * 242.41430 * 4 2 1 6 6 C 1.34776 * 127.03602 * 154.51611 * 5 4 2 7 7 O 1.21494 * 120.00191 * 180.02562 * 6 5 4 8 8 C 1.48335 * 119.99847 * 0.02562 * 6 5 4 9 9 N 1.31490 * 127.15594 * 359.68053 * 8 6 5 10 10 O 1.21432 * 111.52782 * 180.25509 * 9 8 6 11 11 C 1.33185 * 111.56542 * 359.95748 * 10 9 8 12 12 C 1.35371 * 106.64075 * 0.08143 * 11 10 9 13 13 C 1.50064 * 124.94483 * 179.80560 * 12 11 10 14 14 C 1.53550 * 108.23058 * 343.96511 * 13 12 11 15 15 C 1.53114 * 109.51121 * 49.17899 * 14 13 12 16 16 C 1.50602 * 129.59779 * 180.22252 * 11 10 9 17 17 C 1.48119 * 105.92969 * 334.77425 * 5 4 2 18 18 C 1.54594 * 103.42188 * 39.02722 * 17 5 4 19 19 H 1.09001 * 110.57784 * 81.16978 * 18 17 5 20 20 C 1.53006 * 110.83359 * 204.44672 * 18 17 5 21 21 N 1.46499 * 109.46857 * 288.56430 * 20 18 17 22 22 C 1.36944 * 119.99715 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99732 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99618 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99747 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00201 * 0.02562 * 24 22 21 27 27 H 1.48490 * 109.47308 * 89.99951 * 26 24 22 28 28 H 1.48505 * 109.47083 * 210.00009 * 26 24 22 29 29 H 1.48505 * 109.47099 * 329.99797 * 26 24 22 30 30 H 1.09000 * 109.46935 * 180.68463 * 1 2 3 31 31 H 1.08996 * 109.46679 * 300.67826 * 1 2 3 32 32 H 1.09001 * 109.47465 * 60.68252 * 1 2 3 33 33 H 1.08997 * 109.92010 * 123.04533 * 4 2 1 34 34 H 1.09006 * 110.07150 * 1.85655 * 4 2 1 35 35 H 1.08996 * 109.70861 * 103.63897 * 13 12 11 36 36 H 1.08990 * 109.71479 * 224.27511 * 13 12 11 37 37 H 1.09001 * 109.46015 * 289.17078 * 14 13 12 38 38 H 1.08994 * 109.46710 * 169.19185 * 14 13 12 39 39 H 1.08994 * 109.42587 * 170.06317 * 15 14 13 40 40 H 1.08997 * 109.42467 * 50.21898 * 15 14 13 41 41 H 1.08996 * 109.69206 * 282.88489 * 16 11 10 42 42 H 1.08993 * 109.70147 * 43.44087 * 16 11 10 43 43 H 1.08991 * 110.66162 * 157.51120 * 17 5 4 44 44 H 1.09003 * 110.66379 * 280.62729 * 17 5 4 45 45 H 1.09005 * 109.46780 * 48.55994 * 20 18 17 46 46 H 1.09000 * 109.47186 * 168.56009 * 20 18 17 47 47 H 0.96998 * 119.99743 * 359.97438 * 21 20 18 48 48 H 0.96996 * 120.00157 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7680 -1.2229 5 7 2.8277 -1.9217 -0.7103 6 6 3.0614 -3.0872 -1.3455 7 8 3.7103 -3.9571 -0.7994 8 6 2.5263 -3.3078 -2.7112 9 7 1.8069 -2.4717 -3.4270 10 8 1.5160 -2.9455 -4.5066 11 6 2.0110 -4.1734 -4.6518 12 6 2.6781 -4.4600 -3.5093 13 6 3.3941 -5.7494 -3.2324 14 6 2.9108 -6.7949 -4.2479 15 6 2.9759 -6.2051 -5.6594 16 6 1.9021 -5.1206 -5.8175 17 6 3.2790 -1.5397 0.6477 18 6 2.0672 -0.7736 1.2262 19 1 1.3175 -1.4700 1.6020 20 6 2.5096 0.1939 2.3259 21 7 2.9005 -0.5655 3.5162 22 6 3.3346 0.0924 4.6361 23 1 3.3891 1.1710 4.6416 24 6 3.7044 -0.6272 5.7640 25 7 4.1221 0.0051 6.8402 26 14 3.6108 -2.4928 5.7541 27 1 4.9024 -3.0507 5.2792 28 1 3.3359 -2.9820 7.1290 29 1 2.5195 -2.9288 4.8461 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3632 0.5243 0.8838 32 1 -0.3634 0.5032 -0.8960 33 1 2.7180 -0.1226 -1.8103 34 1 1.2354 -1.1156 -1.8387 35 1 4.4690 -5.6032 -3.3389 36 1 3.1668 -6.0864 -2.2212 37 1 1.8828 -7.0757 -4.0186 38 1 3.5490 -7.6768 -4.1929 39 1 2.8040 -6.9950 -6.3905 40 1 3.9604 -5.7674 -5.8243 41 1 0.9140 -5.5806 -5.8260 42 1 2.0624 -4.5772 -6.7487 43 1 3.4936 -2.4257 1.2451 44 1 4.1524 -0.8897 0.5942 45 1 3.3585 0.7803 1.9740 46 1 1.6852 0.8618 2.5755 47 1 2.8512 -1.5342 3.5112 48 1 4.3802 -0.4976 7.6285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106693509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:22 Heat of formation + Delta-G solvation = 33.634549 kcal Electronic energy + Delta-G solvation = -29048.258274 eV Core-core repulsion = 25106.407617 eV Total energy + Delta-G solvation = -3941.850658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.37269 -40.15823 -38.30640 -37.81223 -34.90285 -34.16609 -32.87415 -31.54764 -31.35791 -30.69710 -29.53171 -26.78258 -26.14111 -24.94345 -23.91934 -23.15020 -22.63946 -21.15321 -20.37252 -20.05500 -19.35929 -18.13030 -17.74127 -17.35777 -16.80883 -16.06138 -15.59956 -15.38303 -14.69321 -14.46606 -14.41344 -14.33170 -14.20041 -13.77954 -13.68574 -13.54991 -13.35632 -13.12486 -12.80002 -12.73568 -12.46301 -12.31134 -12.05643 -11.70043 -11.51044 -11.46667 -11.39977 -11.28792 -11.12090 -10.92800 -10.64579 -10.54903 -10.49738 -10.36993 -10.22811 -10.09459 -9.57743 -9.42848 -8.89851 -8.76338 -7.23370 -5.75960 -3.11880 0.85536 1.38692 2.49575 2.70855 3.01359 3.40583 3.44337 3.48343 3.67037 4.06474 4.25769 4.34496 4.48016 4.54781 4.57090 4.61069 4.67537 4.76774 4.83869 4.95518 5.00964 5.04791 5.23857 5.27697 5.34543 5.40476 5.44953 5.47503 5.53143 5.54975 5.55469 5.65039 5.68701 5.70821 5.76193 5.82291 5.92065 5.94102 6.00499 6.04738 6.11878 6.16830 6.37474 6.61428 6.71782 7.34831 7.66910 7.95618 7.99285 8.42867 9.21439 9.94064 10.13235 11.42319 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.002783 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.295964 B =10059.253652 C =11326.004982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.091 0.909 4 C 0.102 3.898 5 N -0.606 5.606 6 C 0.612 3.388 7 O -0.521 6.521 8 C -0.008 4.008 9 N -0.333 5.333 10 O 0.123 5.877 11 C -0.039 4.039 12 C -0.152 4.152 13 C -0.046 4.046 14 C -0.124 4.124 15 C -0.119 4.119 16 C -0.034 4.034 17 C 0.113 3.887 18 C -0.107 4.107 19 H 0.084 0.916 20 C 0.170 3.830 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.091 0.909 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.882 3.118 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 -10.254 -30.701 33.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.021 4.021 5 N -0.339 5.339 6 C 0.398 3.602 7 O -0.396 6.396 8 C -0.166 4.166 9 N -0.037 5.037 10 O 0.051 5.949 11 C -0.103 4.103 12 C -0.157 4.157 13 C -0.084 4.084 14 C -0.161 4.161 15 C -0.157 4.157 16 C -0.072 4.072 17 C -0.008 4.008 18 C -0.127 4.127 19 H 0.102 0.898 20 C 0.042 3.958 21 N -0.402 5.402 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.713 3.287 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.194 0.806 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.647 -9.373 -30.013 32.138 hybrid contribution 0.263 -1.785 0.249 1.821 sum -6.384 -11.158 -29.764 32.421 Atomic orbital electron populations 1.21828 0.94001 1.01892 1.02098 1.22093 0.96551 0.99835 0.93364 0.89059 1.22421 0.96091 0.86907 0.96664 1.48661 1.52720 1.14252 1.18252 1.16406 0.80195 0.81272 0.82355 1.90811 1.40167 1.42648 1.65966 1.22972 1.02470 0.93269 0.97873 1.74633 1.14851 1.20887 0.93320 1.84687 1.56337 1.25626 1.28200 1.24121 0.99499 0.87300 0.99407 1.20661 1.03885 0.98146 0.92994 1.20019 0.99186 0.88555 1.00617 1.21725 1.02337 0.98173 0.93898 1.21659 0.98762 0.97396 0.97843 1.20270 1.01485 0.92779 0.92713 1.22628 0.97392 1.00147 0.80646 1.22596 0.96932 0.98022 0.95123 0.89806 1.20607 0.97290 0.92524 0.85338 1.42738 1.80888 1.04550 1.12066 1.19038 1.35827 0.93183 0.89393 0.89161 1.24665 1.01150 0.97290 0.95938 1.69700 1.50504 1.34358 1.03599 0.86579 0.78017 0.87318 0.76825 1.20915 1.21685 1.20356 0.92841 0.91682 0.92530 0.91382 0.89424 0.89792 0.89149 0.91321 0.90495 0.89982 0.90976 0.88688 0.88825 0.89460 0.89912 0.95094 0.94903 0.80636 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.90 37.16 0.33 -1.21 16 2 C -0.10 -1.21 3.17 -89.25 -0.28 -1.49 16 3 H 0.09 1.03 7.85 -51.93 -0.41 0.62 16 4 C 0.10 1.27 5.97 -2.98 -0.02 1.25 16 5 N -0.61 -9.09 3.29 -170.91 -0.56 -9.66 16 6 C 0.61 9.80 7.92 -12.11 -0.10 9.71 16 7 O -0.52 -9.64 16.29 5.37 0.09 -9.55 16 8 C -0.01 -0.11 7.02 -82.82 -0.58 -0.69 16 9 N -0.33 -4.16 9.46 33.29 0.31 -3.84 16 10 O 0.12 1.29 11.18 19.20 0.21 1.50 16 11 C -0.04 -0.34 7.38 -35.38 -0.26 -0.60 16 12 C -0.15 -1.69 6.04 -104.92 -0.63 -2.32 16 13 C -0.05 -0.44 5.66 -27.90 -0.16 -0.59 16 14 C -0.12 -0.73 5.92 -26.39 -0.16 -0.89 16 15 C -0.12 -0.51 5.88 -26.45 -0.16 -0.66 16 16 C -0.03 -0.16 6.31 -27.71 -0.17 -0.33 16 17 C 0.11 1.82 6.44 -2.31 -0.01 1.80 16 18 C -0.11 -1.65 2.61 -88.93 -0.23 -1.88 16 19 H 0.08 1.37 7.86 -51.93 -0.41 0.96 16 20 C 0.17 3.19 5.58 -4.04 -0.02 3.17 16 21 N -0.76 -18.05 5.32 -59.90 -0.32 -18.36 16 22 C -0.24 -6.98 10.47 -15.06 -0.16 -7.13 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -29.67 13.97 55.49 0.78 -28.89 16 26 Si 0.88 22.70 27.74 -169.99 -4.71 17.99 16 27 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 30 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.07 5.77 -51.93 -0.30 0.77 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.00 7.83 -51.93 -0.41 0.59 16 37 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.34 8.12 -51.93 -0.42 -0.09 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 1.56 7.85 -51.93 -0.41 1.16 16 44 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 45 H 0.03 0.58 7.99 -51.93 -0.41 0.17 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16 48 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -34.26 381.39 -8.81 -43.08 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.64 Total: 3.80 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.71 Total: -1.81 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.21 Total: -60.76 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.30 Total: -8.04 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.26 -8.81 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106693509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.711 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds