Wall clock time and date at job start Tue Mar 31 2020 17:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.28875 * 2 1 4 4 C 1.53999 * 110.32868 * 237.86920 * 2 1 3 5 5 N 1.47488 * 107.08462 * 242.41430 * 4 2 1 6 6 C 1.34776 * 127.03602 * 154.51611 * 5 4 2 7 7 O 1.21494 * 120.00191 * 180.02562 * 6 5 4 8 8 C 1.48335 * 119.99847 * 0.02562 * 6 5 4 9 9 N 1.31490 * 127.15594 * 359.68053 * 8 6 5 10 10 O 1.21432 * 111.52782 * 180.25509 * 9 8 6 11 11 C 1.33185 * 111.56542 * 359.95748 * 10 9 8 12 12 C 1.35371 * 106.64075 * 0.08143 * 11 10 9 13 13 C 1.50064 * 124.94483 * 179.80560 * 12 11 10 14 14 C 1.53550 * 108.23058 * 343.96511 * 13 12 11 15 15 C 1.53114 * 109.51121 * 49.17899 * 14 13 12 16 16 C 1.50602 * 129.59779 * 180.22252 * 11 10 9 17 17 C 1.48119 * 105.92969 * 334.77425 * 5 4 2 18 18 C 1.54594 * 103.42188 * 39.02722 * 17 5 4 19 19 H 1.09001 * 110.57784 * 81.16978 * 18 17 5 20 20 C 1.53006 * 110.83359 * 204.44672 * 18 17 5 21 21 N 1.46499 * 109.46857 * 288.56430 * 20 18 17 22 22 C 1.36944 * 119.99715 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99732 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99618 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99747 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00201 * 0.02562 * 24 22 21 27 27 H 1.48490 * 109.47308 * 89.99951 * 26 24 22 28 28 H 1.48505 * 109.47083 * 210.00009 * 26 24 22 29 29 H 1.48505 * 109.47099 * 329.99797 * 26 24 22 30 30 H 1.09000 * 109.46935 * 180.68463 * 1 2 3 31 31 H 1.08996 * 109.46679 * 300.67826 * 1 2 3 32 32 H 1.09001 * 109.47465 * 60.68252 * 1 2 3 33 33 H 1.08997 * 109.92010 * 123.04533 * 4 2 1 34 34 H 1.09006 * 110.07150 * 1.85655 * 4 2 1 35 35 H 1.08996 * 109.70861 * 103.63897 * 13 12 11 36 36 H 1.08990 * 109.71479 * 224.27511 * 13 12 11 37 37 H 1.09001 * 109.46015 * 289.17078 * 14 13 12 38 38 H 1.08994 * 109.46710 * 169.19185 * 14 13 12 39 39 H 1.08994 * 109.42587 * 170.06317 * 15 14 13 40 40 H 1.08997 * 109.42467 * 50.21898 * 15 14 13 41 41 H 1.08996 * 109.69206 * 282.88489 * 16 11 10 42 42 H 1.08993 * 109.70147 * 43.44087 * 16 11 10 43 43 H 1.08991 * 110.66162 * 157.51120 * 17 5 4 44 44 H 1.09003 * 110.66379 * 280.62729 * 17 5 4 45 45 H 1.09005 * 109.46780 * 48.55994 * 20 18 17 46 46 H 1.09000 * 109.47186 * 168.56009 * 20 18 17 47 47 H 0.96998 * 119.99743 * 359.97438 * 21 20 18 48 48 H 0.96996 * 120.00157 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7680 -1.2229 5 7 2.8277 -1.9217 -0.7103 6 6 3.0614 -3.0872 -1.3455 7 8 3.7103 -3.9571 -0.7994 8 6 2.5263 -3.3078 -2.7112 9 7 1.8069 -2.4717 -3.4270 10 8 1.5160 -2.9455 -4.5066 11 6 2.0110 -4.1734 -4.6518 12 6 2.6781 -4.4600 -3.5093 13 6 3.3941 -5.7494 -3.2324 14 6 2.9108 -6.7949 -4.2479 15 6 2.9759 -6.2051 -5.6594 16 6 1.9021 -5.1206 -5.8175 17 6 3.2790 -1.5397 0.6477 18 6 2.0672 -0.7736 1.2262 19 1 1.3175 -1.4700 1.6020 20 6 2.5096 0.1939 2.3259 21 7 2.9005 -0.5655 3.5162 22 6 3.3346 0.0924 4.6361 23 1 3.3891 1.1710 4.6416 24 6 3.7044 -0.6272 5.7640 25 7 4.1221 0.0051 6.8402 26 14 3.6108 -2.4928 5.7541 27 1 4.9024 -3.0507 5.2792 28 1 3.3359 -2.9820 7.1290 29 1 2.5195 -2.9288 4.8461 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3632 0.5243 0.8838 32 1 -0.3634 0.5032 -0.8960 33 1 2.7180 -0.1226 -1.8103 34 1 1.2354 -1.1156 -1.8387 35 1 4.4690 -5.6032 -3.3389 36 1 3.1668 -6.0864 -2.2212 37 1 1.8828 -7.0757 -4.0186 38 1 3.5490 -7.6768 -4.1929 39 1 2.8040 -6.9950 -6.3905 40 1 3.9604 -5.7674 -5.8243 41 1 0.9140 -5.5806 -5.8260 42 1 2.0624 -4.5772 -6.7487 43 1 3.4936 -2.4257 1.2451 44 1 4.1524 -0.8897 0.5942 45 1 3.3585 0.7803 1.9740 46 1 1.6852 0.8618 2.5755 47 1 2.8512 -1.5342 3.5112 48 1 4.3802 -0.4976 7.6285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106693509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:21 Heat of formation + Delta-G solvation = 12.254812 kcal Electronic energy + Delta-G solvation = -29049.185369 eV Core-core repulsion = 25106.407617 eV Total energy + Delta-G solvation = -3942.777752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.24413 -41.36803 -39.39584 -38.54739 -36.68792 -35.13792 -34.19754 -33.35819 -32.03301 -31.45729 -30.93579 -28.03062 -27.39174 -25.84735 -25.08214 -24.14166 -23.76711 -22.58167 -21.37912 -21.10544 -20.30866 -19.61768 -19.00422 -18.34982 -17.86969 -17.35379 -16.73814 -16.58316 -16.06289 -15.87830 -15.56800 -15.22179 -14.94671 -14.86673 -14.78005 -14.64623 -14.37921 -14.21198 -14.12122 -13.88056 -13.67502 -13.45591 -13.28215 -13.08201 -12.87392 -12.64870 -12.44046 -12.16303 -11.94701 -11.90360 -11.89171 -11.85972 -11.73196 -11.62324 -11.60762 -11.38609 -11.32850 -11.02115 -10.16452 -9.97090 -9.33190 -8.06115 -5.38985 -0.08117 0.56309 1.33890 1.36339 1.42227 1.47552 1.86482 1.90153 2.43773 2.67220 3.22651 3.26067 3.42522 3.45176 3.59273 3.67393 3.82386 3.91362 3.97210 4.03510 4.11562 4.19443 4.23487 4.31657 4.38817 4.42087 4.45367 4.55309 4.58173 4.69437 4.73183 4.73712 4.86219 4.89703 4.94460 4.98164 4.98604 5.08869 5.14213 5.15075 5.17753 5.24981 5.30928 5.41709 5.42070 5.73252 6.16701 6.18582 6.63170 6.93974 7.04058 7.80446 7.97642 9.15319 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.002783 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.295964 B =10059.253652 C =11326.004982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.107 0.893 4 C 0.106 3.894 5 N -0.607 5.607 6 C 0.605 3.395 7 O -0.559 6.559 8 C -0.035 4.035 9 N -0.342 5.342 10 O 0.135 5.865 11 C -0.016 4.016 12 C -0.175 4.175 13 C -0.047 4.047 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.034 4.034 17 C 0.112 3.888 18 C -0.096 4.096 19 H 0.076 0.924 20 C 0.169 3.831 21 N -0.761 5.761 22 C -0.230 4.230 23 H 0.064 0.936 24 C -0.060 4.060 25 N -0.981 5.981 26 Si 0.947 3.053 27 H -0.282 1.282 28 H -0.292 1.292 29 H -0.258 1.258 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.036 0.964 46 H 0.039 0.961 47 H 0.363 0.637 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -11.379 -34.582 37.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.125 0.875 4 C -0.016 4.016 5 N -0.339 5.339 6 C 0.392 3.608 7 O -0.436 6.436 8 C -0.192 4.192 9 N -0.044 5.044 10 O 0.060 5.940 11 C -0.080 4.080 12 C -0.181 4.181 13 C -0.085 4.085 14 C -0.157 4.157 15 C -0.153 4.153 16 C -0.072 4.072 17 C -0.009 4.009 18 C -0.116 4.116 19 H 0.095 0.905 20 C 0.043 3.957 21 N -0.407 5.407 22 C -0.361 4.361 23 H 0.082 0.918 24 C -0.252 4.252 25 N -0.632 5.632 26 Si 0.775 3.225 27 H -0.208 1.208 28 H -0.219 1.219 29 H -0.183 1.183 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.195 0.805 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.278 -10.466 -33.939 36.468 hybrid contribution 0.752 -1.353 1.351 2.055 sum -7.525 -11.819 -32.588 35.472 Atomic orbital electron populations 1.21810 0.92660 1.01781 1.03204 1.22097 0.97584 0.99995 0.91195 0.87458 1.22546 0.96228 0.86076 0.96789 1.48732 1.52664 1.14766 1.17753 1.16816 0.79737 0.80950 0.83264 1.90773 1.41890 1.43828 1.67142 1.22804 1.04128 0.94961 0.97259 1.74590 1.14916 1.21064 0.93837 1.84658 1.55740 1.26355 1.27231 1.24879 0.96946 0.86495 0.99727 1.20935 1.05246 0.98215 0.93706 1.20033 0.98745 0.89197 1.00496 1.21732 1.02550 0.97381 0.94005 1.21697 0.98529 0.97992 0.97081 1.20629 1.02822 0.92022 0.91707 1.22515 0.97863 0.99218 0.81345 1.22410 0.96419 0.97442 0.95285 0.90545 1.20766 0.97472 0.92982 0.84490 1.42800 1.80701 1.04848 1.12322 1.19051 1.34137 0.92256 0.90671 0.91844 1.25413 1.01937 1.02023 0.95798 1.69859 1.52640 1.36199 1.04460 0.85532 0.78481 0.81608 0.76914 1.20817 1.21860 1.18314 0.93544 0.91802 0.90242 0.90122 0.88847 0.90636 0.91836 0.90973 0.89366 0.86990 0.91391 0.86372 0.86235 0.91864 0.89830 0.94618 0.94279 0.80469 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.90 71.98 0.64 -2.04 16 2 C -0.09 -2.00 3.17 -9.90 -0.03 -2.04 16 3 H 0.11 2.12 7.85 -2.39 -0.02 2.10 16 4 C 0.11 2.46 5.97 86.53 0.52 2.98 16 5 N -0.61 -18.25 3.29 -812.93 -2.68 -20.93 16 6 C 0.60 19.95 7.92 86.93 0.69 20.63 16 7 O -0.56 -21.79 16.29 -3.70 -0.06 -21.85 16 8 C -0.04 -0.96 7.02 42.56 0.30 -0.66 16 9 N -0.34 -8.10 9.46 -48.95 -0.46 -8.56 16 10 O 0.13 2.51 11.18 78.73 0.88 3.39 16 11 C -0.02 -0.24 7.38 24.99 0.18 -0.06 16 12 C -0.18 -3.80 6.04 -20.05 -0.12 -3.92 16 13 C -0.05 -0.89 5.66 29.83 0.17 -0.73 16 14 C -0.12 -1.17 5.92 30.82 0.18 -0.99 16 15 C -0.12 -0.57 5.88 30.78 0.18 -0.38 16 16 C -0.03 -0.17 6.31 29.96 0.19 0.02 16 17 C 0.11 3.65 6.44 86.61 0.56 4.20 16 18 C -0.10 -2.88 2.61 -9.70 -0.03 -2.90 16 19 H 0.08 2.44 7.86 -2.39 -0.02 2.42 16 20 C 0.17 6.23 5.58 86.38 0.48 6.71 16 21 N -0.76 -36.20 5.32 -343.43 -1.83 -38.03 16 22 C -0.23 -13.31 10.47 84.03 0.88 -12.43 16 23 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 24 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 25 N -0.98 -63.88 13.97 21.65 0.30 -63.58 16 26 Si 0.95 47.56 27.74 68.60 1.90 49.47 16 27 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 29 H -0.26 -11.99 6.52 99.48 0.65 -11.34 16 30 H 0.05 0.97 8.13 -2.39 -0.02 0.96 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 2.12 5.77 -2.38 -0.01 2.11 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.51 7.83 -2.39 -0.02 1.49 16 37 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.07 0.43 8.12 -2.39 -0.02 0.41 16 41 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.06 2.34 7.85 -2.39 -0.02 2.33 16 44 H 0.08 2.66 7.93 -2.39 -0.02 2.65 16 45 H 0.04 1.31 7.99 -2.38 -0.02 1.29 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.36 17.00 5.53 -92.71 -0.51 16.49 16 48 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -77.23 381.39 3.71 -73.52 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.40 Total: 21.32 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 5.26 Total: 5.25 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -4.67 Total: -131.09 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.82 Total: -18.46 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.90 Total: 49.47 kcal Total: -77.23 3.71 -73.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106693509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.775 kcal (2) G-P(sol) polarization free energy of solvation -77.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds