Wall clock time and date at job start Tue Mar 31 2020 17:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.29304 * 2 1 4 4 C 1.54003 * 110.32182 * 237.86555 * 2 1 3 5 5 N 1.47486 * 107.08454 * 242.31216 * 4 2 1 6 6 C 1.34781 * 127.03579 * 154.29172 * 5 4 2 7 7 O 1.21605 * 120.00330 * 180.02562 * 6 5 4 8 8 C 1.47424 * 119.99438 * 0.02562 * 6 5 4 9 9 C 1.36095 * 126.44195 * 179.68476 * 8 6 5 10 10 O 1.34258 * 106.94399 * 179.89977 * 9 8 6 11 11 C 1.34047 * 108.22969 * 0.37091 * 10 9 8 12 12 C 1.50704 * 125.38056 * 179.80442 * 11 10 9 13 13 C 1.52995 * 109.47001 * 269.95802 * 12 11 10 14 14 C 1.53009 * 117.49705 * 243.62194 * 13 12 11 15 15 C 1.52999 * 117.50092 * 174.99983 * 13 12 11 16 16 N 1.29931 * 109.24274 * 359.76290 * 11 10 9 17 17 C 1.48113 * 105.93573 * 334.55302 * 5 4 2 18 18 C 1.54620 * 110.41495 * 122.20144 * 2 1 3 19 19 H 1.09004 * 110.73930 * 22.43376 * 18 2 1 20 20 C 1.53007 * 110.73501 * 259.29970 * 18 2 1 21 21 N 1.46499 * 109.47106 * 174.99432 * 20 18 2 22 22 C 1.36933 * 119.99935 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00290 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99686 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00305 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99646 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47335 * 59.99598 * 26 24 22 28 28 H 1.48493 * 109.46905 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47093 * 299.99777 * 26 24 22 30 30 H 1.09001 * 109.47456 * 180.68457 * 1 2 3 31 31 H 1.09006 * 109.46648 * 300.67406 * 1 2 3 32 32 H 1.08996 * 109.47142 * 60.67595 * 1 2 3 33 33 H 1.08999 * 109.91434 * 122.95292 * 4 2 1 34 34 H 1.09002 * 110.07717 * 1.75872 * 4 2 1 35 35 H 1.07997 * 126.52887 * 0.03873 * 9 8 6 36 36 H 1.09002 * 109.46845 * 29.95536 * 12 11 10 37 37 H 1.08993 * 109.47311 * 149.95507 * 12 11 10 38 38 H 1.09000 * 115.55425 * 29.32660 * 13 12 11 39 39 H 1.08994 * 117.49220 * 359.97438 * 14 13 12 40 40 H 1.08993 * 117.49897 * 145.01986 * 14 13 12 41 41 H 1.09000 * 117.50148 * 214.98044 * 15 13 12 42 42 H 1.09003 * 117.49681 * 359.97438 * 15 13 12 43 43 H 1.08997 * 110.66402 * 157.73301 * 17 5 4 44 44 H 1.08998 * 110.66769 * 280.85712 * 17 5 4 45 45 H 1.08994 * 109.46861 * 294.99843 * 20 18 2 46 46 H 1.09006 * 109.46771 * 54.99904 * 20 18 2 47 47 H 0.97002 * 119.99709 * 0.02562 * 21 20 18 48 48 H 0.96996 * 119.99900 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8296 -1.9204 -0.7104 6 6 3.0607 -3.0877 -1.3433 7 8 3.7124 -3.9570 -0.7970 8 6 2.5234 -3.3105 -2.6979 9 6 2.6809 -4.4297 -3.4561 10 8 2.0327 -4.2138 -4.6118 11 6 1.4958 -2.9863 -4.5685 12 6 0.6873 -2.3482 -5.6687 13 6 1.6205 -1.5835 -6.6095 14 6 1.4434 -0.0665 -6.7008 15 6 1.0037 -0.9594 -7.8629 16 7 1.7818 -2.4338 -3.4278 17 6 3.2863 -1.5349 0.6448 18 6 2.0694 -0.7722 1.2262 19 1 1.3209 -1.4693 1.6031 20 6 2.5073 0.1964 2.3267 21 7 2.9002 -0.5620 3.5169 22 6 3.3319 0.0968 4.6369 23 1 3.3824 1.1756 4.6431 24 6 3.7047 -0.6219 5.7645 25 7 3.6437 -1.9366 5.7569 26 14 4.2929 0.2769 7.2928 27 1 3.2188 1.1787 7.7810 28 1 4.6278 -0.7108 8.3498 29 1 5.4993 1.0775 6.9626 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3633 0.5243 0.8840 32 1 -0.3633 0.5033 -0.8959 33 1 2.7165 -0.1222 -1.8112 34 1 1.2352 -1.1172 -1.8377 35 1 3.2221 -5.3225 -3.1797 36 1 0.1612 -3.1217 -6.2283 37 1 -0.0362 -1.6583 -5.2345 38 1 2.6334 -1.9780 -6.6901 39 1 0.6618 0.3865 -6.0910 40 1 2.3399 0.5373 -6.8414 41 1 1.6109 -0.9431 -8.7679 42 1 -0.0669 -1.0940 -8.0174 43 1 3.5072 -2.4193 1.2424 44 1 4.1571 -0.8819 0.5861 45 1 3.3541 0.7862 1.9757 46 1 1.6800 0.8610 2.5761 47 1 2.8552 -1.5310 3.5112 48 1 3.9045 -2.4388 6.5446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106815039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:55 Heat of formation + Delta-G solvation = 1.932686 kcal Electronic energy + Delta-G solvation = -28441.013502 eV Core-core repulsion = 24497.788149 eV Total energy + Delta-G solvation = -3943.225353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.51881 -41.15948 -39.15599 -38.45016 -36.50215 -35.94150 -34.14439 -33.05661 -32.82650 -30.74809 -29.00961 -27.62080 -27.21062 -25.45307 -24.24215 -23.18617 -22.93743 -22.51664 -21.63696 -21.14981 -20.59058 -19.25342 -18.62712 -17.90287 -17.72298 -17.27553 -16.75080 -16.59116 -16.46187 -15.77118 -15.44978 -15.18424 -15.12303 -15.02585 -14.85084 -14.52742 -14.37115 -14.03575 -13.74440 -13.67429 -13.43697 -13.19038 -12.91531 -12.74774 -12.71321 -12.49045 -12.30571 -12.26482 -12.21020 -11.97948 -11.86010 -11.75785 -11.59571 -11.39284 -11.29114 -11.23451 -10.92341 -10.86112 -10.17805 -9.74426 -9.00112 -7.93900 -5.23588 -0.00172 0.89699 1.46870 1.48758 1.50757 1.56783 1.79164 2.11557 2.56376 2.70861 2.94971 3.33681 3.39832 3.58260 3.67335 3.73772 3.80609 3.83109 4.04697 4.12154 4.17074 4.24993 4.28269 4.38086 4.43315 4.51421 4.52910 4.57561 4.69789 4.74208 4.75676 4.78610 4.84621 4.87895 4.89854 4.95142 5.06632 5.11750 5.17857 5.19908 5.26057 5.30182 5.33797 5.34329 5.49384 5.54355 6.27128 6.31967 6.46468 6.89911 7.33108 8.08992 8.31425 9.29615 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.002329 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.766482 B =12018.818142 C =12931.756013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 H 0.103 0.897 4 C 0.113 3.887 5 N -0.605 5.605 6 C 0.606 3.394 7 O -0.580 6.580 8 C -0.093 4.093 9 C 0.029 3.971 10 O -0.192 6.192 11 C 0.208 3.792 12 C 0.011 3.989 13 C -0.166 4.166 14 C -0.181 4.181 15 C -0.159 4.159 16 N -0.466 5.466 17 C 0.118 3.882 18 C -0.091 4.091 19 H 0.067 0.933 20 C 0.166 3.834 21 N -0.748 5.748 22 C -0.244 4.244 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.977 3.023 27 H -0.275 1.275 28 H -0.298 1.298 29 H -0.277 1.277 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.252 0.748 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.029 0.971 46 H 0.033 0.967 47 H 0.371 0.629 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 2.130 -32.263 33.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 H 0.121 0.879 4 C -0.009 4.009 5 N -0.335 5.335 6 C 0.396 3.604 7 O -0.461 6.461 8 C -0.212 4.212 9 C -0.046 4.046 10 O -0.078 6.078 11 C -0.002 4.002 12 C -0.026 4.026 13 C -0.185 4.185 14 C -0.218 4.218 15 C -0.196 4.196 16 N -0.196 5.196 17 C -0.005 4.005 18 C -0.111 4.111 19 H 0.085 0.915 20 C 0.040 3.960 21 N -0.390 5.390 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.805 3.195 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.203 1.203 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.267 0.733 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.047 0.953 46 H 0.051 0.949 47 H 0.202 0.798 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.384 2.378 -31.766 33.209 hybrid contribution 1.114 -1.057 1.395 2.075 sum -8.270 1.321 -30.371 31.505 Atomic orbital electron populations 1.21776 0.92717 1.01625 1.02998 1.22134 0.97551 0.99832 0.91619 0.87888 1.22508 0.96539 0.85735 0.96088 1.48651 1.52378 1.15006 1.17476 1.16791 0.79320 0.80698 0.83612 1.90816 1.43102 1.44393 1.67814 1.21441 1.07540 0.94932 0.97246 1.25665 0.95737 1.00929 0.82252 1.84432 1.52700 1.34434 1.36205 1.26983 0.97309 0.80062 0.95823 1.19957 0.94215 0.99471 0.88977 1.22079 0.99972 0.95998 1.00431 1.23161 1.03818 0.92093 1.02716 1.23104 1.02395 1.02117 0.92009 1.70788 1.14645 1.30319 1.03849 1.22426 0.97516 0.98718 0.81800 1.22387 0.96086 0.97284 0.95298 0.91504 1.20780 0.96851 0.93055 0.85335 1.42625 1.79326 1.05667 1.11395 1.19629 1.34542 0.91833 0.91531 0.90204 1.25642 1.03613 0.96277 1.01701 1.69835 1.56181 1.06184 1.30114 0.85165 0.78416 0.77037 0.78860 1.20107 1.22439 1.20290 0.93737 0.92288 0.89914 0.90730 0.87619 0.73254 0.85912 0.85960 0.88814 0.87602 0.89176 0.88133 0.86808 0.92853 0.90584 0.95336 0.94887 0.79756 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.90 71.98 0.64 -2.13 16 2 C -0.09 -2.23 3.17 -9.90 -0.03 -2.26 16 3 H 0.10 2.20 7.85 -2.39 -0.02 2.18 16 4 C 0.11 2.78 5.93 86.53 0.51 3.30 16 5 N -0.60 -19.50 3.29 -813.27 -2.68 -22.18 16 6 C 0.61 20.73 7.89 86.66 0.68 21.41 16 7 O -0.58 -23.88 17.10 -4.05 -0.07 -23.95 16 8 C -0.09 -2.46 6.84 40.41 0.28 -2.18 16 9 C 0.03 0.58 11.95 67.32 0.80 1.39 16 10 O -0.19 -3.38 10.73 0.40 0.00 -3.37 16 11 C 0.21 3.47 7.51 88.39 0.66 4.13 16 12 C 0.01 0.09 6.12 29.85 0.18 0.28 16 13 C -0.17 -1.48 5.72 -10.79 -0.06 -1.55 16 14 C -0.18 -1.52 10.18 30.60 0.31 -1.21 16 15 C -0.16 -0.91 10.25 30.60 0.31 -0.59 16 16 N -0.47 -10.35 8.54 -293.04 -2.50 -12.85 16 17 C 0.12 4.29 6.46 86.73 0.56 4.85 16 18 C -0.09 -3.04 2.62 -9.58 -0.03 -3.07 16 19 H 0.07 2.47 7.86 -2.38 -0.02 2.45 16 20 C 0.17 6.59 5.58 86.38 0.48 7.08 16 21 N -0.75 -39.09 5.52 -343.44 -1.90 -40.98 16 22 C -0.24 -13.87 9.99 84.04 0.84 -13.03 16 23 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 24 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 25 N -0.97 -61.89 13.06 21.65 0.28 -61.61 16 26 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 28 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 29 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.11 2.46 5.67 -2.39 -0.01 2.44 16 35 H 0.25 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.12 0.76 7.87 -2.39 -0.02 0.74 16 38 H 0.09 1.10 8.07 -2.39 -0.02 1.08 16 39 H 0.11 0.77 8.03 -2.39 -0.02 0.75 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.05 2.32 7.85 -2.39 -0.02 2.30 16 44 H 0.08 2.74 7.95 -2.39 -0.02 2.72 16 45 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 46 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.37 21.12 7.67 -92.71 -0.71 20.41 16 48 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -76.24 398.02 2.04 -74.19 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.25 Total: 29.38 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.62 Total: 12.12 kcal Atomic # 7 Polarization: -130.83 SS G_CDS: -6.79 Total: -137.62 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.33 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -76.24 2.04 -74.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106815039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.127 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds